Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4355687 .. 4361693

Gene Structure 6007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG065700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAAGAATCATGCAGCAATTGCAAGGTCCTCAACATCGTCGACGATCATAGGATCAAAGGGGGGTCAGTTTGATTCAAACAATAACTTTGATGCACTTGTTGAAGAAACTATAGTGTGCTCTTCATCAACAAGTACTGCTTCTGATGTTCAAGATCATGATGATTACCATTGCGCACTTTCGTTTGTATGGGGACCCACTCTGCTGAATCCCATGGTCATGGGCTCCGGCCCAGAATCACTGGATGGACCGATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

86

Amino Acids

9.07

Weight (kDa)

4.38

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	78, 104, 152
Alw21I	GWGCWC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	4 cut(s)	27, 194, 230, 248
AvaII	GGWCC	3 cut(s)	27, 194, 248
BanII	GRGCYC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	239, 247
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	136
Bme18I	GGWCC	3 cut(s)	27, 194, 248
BmgT120I	GGNCC	4 cut(s)	27, 194, 230, 248
BmiI	GGNNCC	3 cut(s)	195, 196, 226
BmsI	GCATC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	122, 227
Bsp143I	GATC	3 cut(s)	45, 53, 154
Bsp19I	CCATGG	1 cut(s)	213
BspANI	GGCC	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	3 cut(s)	195, 196, 226
BspPI	GGATC	1 cut(s)	61
BspQI	GCTCTTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	45, 53, 154
BssT1I	CCWWGG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	127
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	48, 56, 157
BstMBI	GATC	3 cut(s)	45, 53, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	4 cut(s)	27, 194, 230, 248
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	4 cut(s)	11, 158, 214, 220
CviJI	RGCY	2 cut(s)	225, 231
CviKI_1	RGCY	2 cut(s)	225, 231
CviQI	GTAC	1 cut(s)	135
DpnI	GATC	3 cut(s)	47, 55, 156
DpnII	GATC	3 cut(s)	45, 53, 154
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	3 cut(s)	27, 194, 248
EcoO109I	RGGNCCY	2 cut(s)	27, 194
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	4 cut(s)	14, 161, 217, 223
FaiI	YATR	7 cut(s)	12, 50, 113, 159, 190, 215, 221
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	4 cut(s)	10, 157, 213, 219
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	15
FspI	TGCGCA	1 cut(s)	175
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	14, 161, 217, 223
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	4 cut(s)	7, 74, 208, 236
HpaII	CCGG	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	152, 158
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	2 cut(s)	43, 46
HpyCH4V	TGCA	3 cut(s)	14, 23, 95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	14, 161, 217, 223
HspAI	GCGC	1 cut(s)	174
KflI	GGGWCCC	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	45, 53, 154
LguI	GCTCTTC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	227, 241, 246
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	82
MalI	GATC	3 cut(s)	47, 55, 156
MboI	GATC	3 cut(s)	45, 53, 154
MboII	GAAGA	3 cut(s)	16, 114, 116
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	122, 227
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	1 cut(s)	40
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	3 cut(s)	45, 53, 154
NlaIII	CATG	4 cut(s)	14, 161, 217, 223
NlaIV	GGNNCC	3 cut(s)	195, 196, 226
NsbI	TGCGCA	1 cut(s)	175
PagI	TCATGA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	127
PfeI	GAWTC	4 cut(s)	7, 74, 208, 236
PkrI	GCNGC	1 cut(s)	16
PpuMI	RGGWCCY	2 cut(s)	27, 194
Psp5II	RGGWCCY	2 cut(s)	27, 194
PspN4I	GGNNCC	3 cut(s)	195, 196, 226
PspPI	GGNCC	4 cut(s)	27, 194, 230, 248
PspPPI	RGGWCCY	2 cut(s)	27, 194
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	218
SalI	GTCGAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	127
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	45, 53, 154
Sau96I	GGNCC	4 cut(s)	27, 194, 230, 248
ScaI	AGTACT	1 cut(s)	136
SduI	GDGCHC	2 cut(s)	122, 227
SetI	ASST	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	111
SgrDI	CGTCGACG	1 cut(s)	40
SinI	GGWCC	3 cut(s)	27, 194, 248
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	41
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	134
TfiI	GAWTC	4 cut(s)	7, 74, 208, 236
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	17, 114
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	3 cut(s)	27, 194, 248
XmiI	GTMKAC	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.