Rh7BG073000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
N/A
Physical Location & Seq
Reverse (-)
4934609 .. 4937585
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG073000.1

Sequence Viewer

Length: 660 bp
ATGGTCGCTCTTGCCAAGAATTGCAGCAAAATAGAAATACTTGATTTAGAGTATTGTGAAAGGGTAACCGGAGCTGGCATTCGTGCATTTTCAAGTCATAAGTGCTTGAAGCTCCTTGCATTGTTTGGTTTAAGCAGCTTAGATCAATCTGATGTGGAATGCATAGCGCTTGGATGCCCGTCATTGGAGTCTGTTGTTATAGACAACTTGTTAACTAGGGGTTTTGAATTGATGCAAGAGAACACTAGAAGAGTGGTTAAATTCAAAAGCTCCTATAATCTTCCCCTTCCCCGTTTCAGCACCACCTCATGTATATACTACATAATCGGTGATGGAAAGGATTTACTCTGGACTTACCCCCTGAAAATTTTGCCACCATTGTGGCCTCGATACACACAGGTGCTGATATTACAACCAGTAGCTGTTCGGTTGATGGAAACATCTCCAATGAAAAGATTAGATCCTTTGCATTGCAAATGTGAGCATGCATTGACAATCCCAGATGGGAAACACTGCAAGCTGATCATGACCAAACAACTTGTTAAACTTTTTTCTTTTGTTGGCCTATTAAAGAACGGAAGTACCTTATTACATGTACAGATGTACTTACTTGAGAGTGCTTGGCCTACAAATGCACTTAATGCAATTGCTAGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

219

Amino Acids

24.57

Weight (kDa)

8.83

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 2 cut(s) 260, 366
AfaI GTAC 3 cut(s) 583, 597, 605
AfeI AGCGCT 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 592
AgsI TTSAA 4 cut(s) 93, 109, 227, 265
AleI CACNNNNGTG 2 cut(s) 379, 398
AluBI AGCT 6 cut(s) 74, 112, 138, 270, 422, 520
AluI AGCT 6 cut(s) 74, 112, 138, 270, 422, 520
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 2 cut(s) 403, 422
Aor51HI AGCGCT 1 cut(s) 168
AoxI GGCC 3 cut(s) 383, 562, 623
ApeKI GCWGC 2 cut(s) 24, 135
ApoI RAATTY 2 cut(s) 260, 366
AspLEI GCGC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 650
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BbvI GCAGC 2 cut(s) 36, 147
BccI CCATC 3 cut(s) 326, 427, 497
BclI TGATCA 1 cut(s) 522
BfaI CTAG 3 cut(s) 216, 246, 651
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 2 cut(s) 25, 136
BlsI GCNGC 2 cut(s) 26, 137
BmsI GCATC 2 cut(s) 164, 222
BmtI GCTAGC 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 632
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 469
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 36, 147
BshFI GGCC 3 cut(s) 385, 564, 625
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 184
BsmI GAATGC 2 cut(s) 78, 164
BsnI GGCC 3 cut(s) 385, 564, 625
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 3 cut(s) 142, 460, 522
BspANI GGCC 3 cut(s) 385, 564, 625
BspHI TCATGA 1 cut(s) 525
BspOI GCTAGC 1 cut(s) 654
BspPI GGATC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 469
BsrGI TGTACA 1 cut(s) 595
BsrI ACTGG 1 cut(s) 416
BssMI GATC 3 cut(s) 142, 460, 522
Bst6I CTCTTC 1 cut(s) 244
BstAPI GCANNNNNTGC 1 cut(s) 641
BstAUI TGTACA 1 cut(s) 595
BstC8I GCNNGC 4 cut(s) 76, 486, 518, 652
BstDEI CTNAG 1 cut(s) 139
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 3 cut(s) 145, 463, 525
BstMBI GATC 3 cut(s) 142, 460, 522
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNSI RCATGY 2 cut(s) 488, 596
BstPI GGTNACC 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 36, 147
BstX2I RGATCY 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 1 cut(s) 460
BsuRI GGCC 3 cut(s) 385, 564, 625
BtsCI GGATG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 4 cut(s) 76, 486, 518, 652
CaiI CAGNNNCTG 2 cut(s) 403, 422
CciI TCATGA 1 cut(s) 525
CfoI GCGC 1 cut(s) 169
Csp6I GTAC 3 cut(s) 582, 596, 604
CviAII CATG 4 cut(s) 309, 485, 526, 593
CviJI RGCY 9 cut(s) 74, 112, 138, 270, 385, 422, 520, 564, 625
CviKI_1 RGCY 9 cut(s) 74, 112, 138, 270, 385, 422, 520, 564, 625
CviQI GTAC 3 cut(s) 582, 596, 604
DdeI CTNAG 1 cut(s) 139
DpnI GATC 3 cut(s) 144, 462, 524
DpnII GATC 3 cut(s) 142, 460, 522
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco47III AGCGCT 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoT22I ATGCAT 2 cut(s) 164, 490
FaeI CATG 4 cut(s) 312, 488, 529, 596
FatI CATG 4 cut(s) 308, 484, 525, 592
FbaI TGATCA 1 cut(s) 522
Fnu4HI GCNGC 2 cut(s) 25, 136
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 25, 136
FspBI CTAG 3 cut(s) 216, 246, 651
GlaI GCGC 1 cut(s) 168
GluI GCNGC 2 cut(s) 25, 136
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 3 cut(s) 385, 564, 625
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 169
Hin1II CATG 4 cut(s) 312, 488, 529, 596
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 1 cut(s) 188
HpaI GTTAAC 1 cut(s) 213
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 349, 526
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 4 cut(s) 312, 488, 529, 596
HspAI GCGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 522
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 3 cut(s) 142, 460, 522
LmnI GCTCC 3 cut(s) 71, 117, 275
LpnPI CCDG 7 cut(s) 60, 82, 334, 374, 383, 429, 513
Lsp1109I GCAGC 2 cut(s) 36, 147
LweI GCATC 2 cut(s) 164, 222
MaeI CTAG 3 cut(s) 216, 246, 651
MaeIII GTNAC 1 cut(s) 64
MalI GATC 3 cut(s) 144, 462, 524
MboI GATC 3 cut(s) 142, 460, 522
MboII GAAGA 2 cut(s) 261, 272
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 1 cut(s) 460
MluCI AATT 5 cut(s) 19, 227, 260, 366, 645
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 2 cut(s) 316, 396
Mph1103I ATGCAT 2 cut(s) 164, 490
MseI TTAA 7 cut(s) 131, 212, 258, 543, 569, 639, 658
MslI CAYNNNNRTG 2 cut(s) 379, 398
MspI CCGG 1 cut(s) 69
MunI CAATTG 1 cut(s) 645
Mva1269I GAATGC 2 cut(s) 78, 164
MwoI GCNNNNNNNGC 1 cut(s) 641
NdeII GATC 3 cut(s) 142, 460, 522
NheI GCTAGC 1 cut(s) 650
NlaIII CATG 4 cut(s) 312, 488, 529, 596
NsiI ATGCAT 2 cut(s) 164, 490
NspI RCATGY 2 cut(s) 488, 596
OliI CACNNNNGTG 2 cut(s) 379, 398
PaeI GCATGC 1 cut(s) 488
PagI TCATGA 1 cut(s) 525
PciI ACATGT 1 cut(s) 592
PctI GAATGC 2 cut(s) 78, 164
PkrI GCNGC 2 cut(s) 26, 137
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PscI ACATGT 1 cut(s) 592
PspEI GGTNACC 1 cut(s) 64
PstNI CAGNNNCTG 2 cut(s) 403, 422
PsuI RGATCY 1 cut(s) 460
RsaI GTAC 3 cut(s) 583, 597, 605
RsaNI GTAC 3 cut(s) 582, 596, 604
RseI CAYNNNNRTG 2 cut(s) 379, 398
SaqAI TTAA 7 cut(s) 131, 212, 258, 543, 569, 639, 658
SatI GCNGC 2 cut(s) 25, 136
Sau3AI GATC 3 cut(s) 142, 460, 522
SchI GAGTC 1 cut(s) 197
SetI ASST 9 cut(s) 76, 114, 140, 272, 308, 402, 424, 522, 587
SfaNI GCATC 2 cut(s) 164, 222
SmiMI CAYNNNNRTG 2 cut(s) 379, 398
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
SphI GCATGC 1 cut(s) 488
Sse9I AATT 5 cut(s) 19, 227, 260, 366, 645
SspMI CTAG 3 cut(s) 216, 246, 651
TaqI TCGA 1 cut(s) 388
TasI AATT 5 cut(s) 19, 227, 260, 366, 645
TatI WGTACW 2 cut(s) 595, 603
Tru1I TTAA 7 cut(s) 131, 212, 258, 543, 569, 639, 658
Tru9I TTAA 7 cut(s) 131, 212, 258, 543, 569, 639, 658
TscAI CASTG 1 cut(s) 518
TseI GCWGC 2 cut(s) 24, 135
TspDTI ATGAA 1 cut(s) 464
TspGWI ACGGA 1 cut(s) 591
TspRI CASTG 1 cut(s) 518
XapI RAATTY 2 cut(s) 260, 366
XceI RCATGY 2 cut(s) 488, 596
XspI CTAG 3 cut(s) 216, 246, 651
Zsp2I ATGCAT 2 cut(s) 164, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.