Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6418706 .. 6430443

Gene Structure 11738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG087200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAATGGTGCTTTGCCCAATTTGTGGCTAAAAAGCTCACAAAGCTGCGAATCTCTCTTTCAATATTTGACTCCAAGCAGGAGGTAACGAATCCGATCGAAGCTGGAGAGGCCTTTGCCACGAGAACAAGGCTGAAGATGAATGATAGTGGTAGTGGCGGCATTAGGAGTAATGGCAAGGCTGAAGAAGAAGGCAGCACTGCTCCTCTTCCTGAGAAGGTTACTGTTGGTTGTTCCCCTCTCTACAGATTAGATAGAAAGATGGGTAAGGGTGGCTTCGGACAAGTGTATGTCGGTCTGCGTGTTTCTGATGTAAATACAAACGAGAGAACTGGACCAGGAGCTGTTGAGGTGGCCCTAAAACTCGAGCACAAAAATAGTAAAGGATGCAATTATGGACCGCCACAGGAGTGGAAAGTTTATGACACTCTTGGTGGCAGCCATGGTGTGCCACGGGCCCTTACCGGCTTGAAATACAACCAGGACAAGGTCCCCGGATGGAGGATAGCTCTAACACAAGTAGCAAATTTGTCTGGATGGACTTATGTGGACGGGTATGAATCTGATTTTATTGAGAAAATTGTTAAAGAGATATTAGATGTGGTTGGCCTCGACAACTATAAGAAGAAAGAAGATGTGGCCAGCCTCAACCACCAAAACAAAAAAACAGATTTAACTGGTCTCAATGACCAAACGAAGAACAACAATTGGGCCGACATTTACAATCAGACTTTGCTTCAGTTCCCGAAGAATATAGATGGGGCAGATGTCTATAATAAGGCATACCTTCAACTCCAAGAGAATATAGATGAGGATGATGTCTACAACAAGACCTTCCTTCGACTCCAAAAGGAATCAGAGGAGGCGGACGTCTACAACAAGACCTTCCTTCGGCTCCAGAAGGAATCACAGGATGCGGACGTCTACAACAAGACCTTCCTTCGGCTCCAGAAGGAATCACAGGATGCGGACGTCTACAACAAGACATTACTTCGGCTCCAGAAGGAATCACAGGATGCGGACGTCTACAACAAGACATTACTTCGGCTCCAGAAGGAATCAGAGGAGGCGGACGTCTACAACAAGACATTACTTCGGCTCCAGAAGGAATCAGAGGAGGCGGACGTTTACAACAAGACATTACTTCGGCTCCAGAAGGAATCAGAGGAGGCAGACGTCTACAATAAGACATTACTTCGACTCCAAAACAGGGGCGGATCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

408

Amino Acids

46.37

Weight (kDa)

5.92

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	6 cut(s)	873, 924, 975, 1026, 1077, 1179
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccI	GTMKAC	7 cut(s)	822, 873, 924, 975, 1026, 1077, 1179
AciI	CCGC	9 cut(s)	159, 401, 866, 917, 968, 1019, 1070, 1121, 1215
AclWI	GGATC	2 cut(s)	1212, 1225
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	3 cut(s)	155, 204, 722
AcyI	GRCGYC	6 cut(s)	870, 921, 972, 1023, 1074, 1176
AfiI	CCNNNNNNNGG	6 cut(s)	25, 487, 501, 891, 942, 1210
AgsI	TTSAA	3 cut(s)	63, 472, 791
AjnI	CCWGG	2 cut(s)	337, 480
AleI	CACNNNNGTG	1 cut(s)	409
AluBI	AGCT	5 cut(s)	37, 46, 104, 344, 509
AluI	AGCT	5 cut(s)	37, 46, 104, 344, 509
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	2 cut(s)	1212, 1225
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	6 cut(s)	111, 354, 456, 607, 639, 711
ApaI	GGGCCC	1 cut(s)	460
ApeKI	GCWGC	3 cut(s)	46, 195, 438
ApoI	RAATTY	1 cut(s)	526
AspS9I	GGNCC	7 cut(s)	335, 355, 398, 456, 457, 490, 711
AsuC2I	CCSGG	1 cut(s)	495
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	3 cut(s)	335, 398, 490
BaeGI	GKGCMC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	641
BamHI	GGATCC	1 cut(s)	1217
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	33, 207, 450
BccI	CCATC	4 cut(s)	256, 492, 531, 752
BciT130I	CCWGG	2 cut(s)	339, 482
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	244
BisI	GCNGC	4 cut(s)	47, 160, 196, 439
BlsI	GCNGC	4 cut(s)	48, 161, 197, 440
Bme1390I	CCNGG	3 cut(s)	339, 482, 495
Bme18I	GGWCC	3 cut(s)	335, 398, 490
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	7 cut(s)	335, 355, 398, 456, 457, 490, 711
BmiI	GGNNCC	9 cut(s)	458, 492, 896, 947, 998, 1049, 1100, 1151, 1219
BmrFI	CCNGG	3 cut(s)	339, 482, 495
BmsI	GCATC	4 cut(s)	377, 904, 955, 1006
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	7 cut(s)	126, 881, 932, 983, 1034, 1085, 1136
BpuMI	CCSGG	1 cut(s)	495
BsaHI	GRCGYC	6 cut(s)	870, 921, 972, 1023, 1074, 1176
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	3 cut(s)	442, 452, 493
Bsc4I	CCNNNNNNNGG	6 cut(s)	25, 487, 501, 891, 942, 1210
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	2 cut(s)	337, 682
BseBI	CCWGG	2 cut(s)	339, 482
BseDI	CCNNGG	3 cut(s)	442, 452, 493
BseGI	GGATG	7 cut(s)	392, 503, 542, 820, 919, 970, 1021
BseLI	CCNNNNNNNGG	6 cut(s)	25, 487, 501, 891, 942, 1210
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	337, 682
BseRI	GAGGAG	5 cut(s)	195, 875, 1079, 1130, 1181
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	3 cut(s)	33, 207, 450
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	6 cut(s)	113, 356, 458, 609, 641, 713
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	465, 495
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	6 cut(s)	25, 487, 501, 891, 942, 1210
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	6 cut(s)	113, 356, 458, 609, 641, 713
Bso31I	GGTCTC	1 cut(s)	686
BsoBI	CYCGRG	1 cut(s)	365
Bsp120I	GGGCCC	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	372, 460
Bsp143I	GATC	2 cut(s)	96, 1217
Bsp19I	CCATGG	1 cut(s)	442
BspACI	CCGC	9 cut(s)	159, 401, 866, 917, 968, 1019, 1070, 1121, 1215
BspANI	GGCC	6 cut(s)	113, 356, 458, 609, 641, 713
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	9 cut(s)	458, 492, 896, 947, 998, 1049, 1100, 1151, 1219
BspPI	GGATC	2 cut(s)	1212, 1225
BspTNI	GGTCTC	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	337, 682
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	442, 452, 493
BssMI	GATC	2 cut(s)	96, 1217
BssNI	GRCGYC	6 cut(s)	870, 921, 972, 1023, 1074, 1176
BssSI	CACGAG	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	339, 482
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	6 cut(s)	870, 921, 972, 1023, 1074, 1176
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	2 cut(s)	442, 452
BstF5I	GGATG	7 cut(s)	392, 503, 542, 820, 919, 970, 1021
BstKTI	GATC	2 cut(s)	99, 1220
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	2 cut(s)	96, 1217
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 110
BstNI	CCWGG	2 cut(s)	339, 482
BstSCI	CCNGG	3 cut(s)	337, 480, 493
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	33, 207, 450
BstX2I	RGATCY	1 cut(s)	1217
BstXI	CCANNNNNNTGG	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	1217
BsuRI	GGCC	6 cut(s)	113, 356, 458, 609, 641, 713
BtgI	CCRYGG	2 cut(s)	442, 452
BtsCI	GGATG	7 cut(s)	392, 503, 542, 820, 919, 970, 1021
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	643
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	7 cut(s)	335, 355, 398, 456, 457, 490, 711
CviAII	CATG	2 cut(s)	443, 1222
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	98, 1219
DpnII	GATC	2 cut(s)	96, 1217
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	3 cut(s)	881, 1085, 1136
Eco130I	CCWWGG	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	460
Eco31I	GGTCTC	1 cut(s)	686
Eco47I	GGWCC	3 cut(s)	335, 398, 490
Eco57I	CTGAAG	3 cut(s)	155, 204, 722
Eco88I	CYCGRG	1 cut(s)	365
EcoO109I	RGGNCCY	2 cut(s)	457, 490
EcoRII	CCWGG	2 cut(s)	337, 480
EcoT14I	CCWWGG	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	2 cut(s)	446, 1225
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	2 cut(s)	442, 1221
FblI	GTMKAC	7 cut(s)	822, 873, 924, 975, 1026, 1077, 1179
Fnu4HI	GCNGC	4 cut(s)	47, 160, 196, 439
FokI	GGATG	7 cut(s)	399, 510, 549, 827, 926, 977, 1028
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	4 cut(s)	47, 160, 196, 439
GluI	GCNGC	4 cut(s)	47, 160, 196, 439
GsuI	CTGGAG	7 cut(s)	126, 881, 932, 983, 1034, 1085, 1136
HaeIII	GGCC	6 cut(s)	113, 356, 458, 609, 641, 713
HapII	CCGG	2 cut(s)	465, 495
Hin1I	GRCGYC	6 cut(s)	870, 921, 972, 1023, 1074, 1176
Hin1II	CATG	2 cut(s)	446, 1225
HpaII	CCGG	2 cut(s)	465, 495
Hpy166II	GTNNAC	9 cut(s)	550, 823, 874, 925, 976, 1027, 1078, 1129, 1180
Hpy188I	TCNGA	9 cut(s)	96, 281, 310, 565, 729, 859, 1063, 1114, 1165
Hpy188III	TCNNGA	9 cut(s)	212, 534, 745, 898, 949, 1000, 1051, 1102, 1153
Hpy8I	GTNNAC	9 cut(s)	550, 823, 874, 925, 976, 1027, 1078, 1129, 1180
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	7 cut(s)	870, 921, 972, 1023, 1074, 1125, 1176
HpyCH4V	TGCA	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 110
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	7 cut(s)	870, 921, 972, 1023, 1074, 1125, 1176
Hsp92I	GRCGYC	6 cut(s)	870, 921, 972, 1023, 1074, 1176
Hsp92II	CATG	2 cut(s)	446, 1225
Kzo9I	GATC	2 cut(s)	96, 1217
LmnI	GCTCC	8 cut(s)	208, 341, 900, 951, 1002, 1053, 1104, 1155
Lsp1109I	GCAGC	3 cut(s)	33, 207, 450
LweI	GCATC	4 cut(s)	377, 904, 955, 1006
MaeII	ACGT	7 cut(s)	870, 921, 972, 1023, 1074, 1125, 1176
MaeIII	GTNAC	2 cut(s)	85, 220
MalI	GATC	2 cut(s)	98, 1219
MboI	GATC	2 cut(s)	96, 1217
MboII	GAAGA	8 cut(s)	148, 197, 200, 200, 637, 644, 709, 760
MfeI	CAATTG	1 cut(s)	706
MflI	RGATCY	1 cut(s)	1217
MhlI	GDGCHC	2 cut(s)	372, 460
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	5 cut(s)	20, 391, 526, 579, 706
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	3 cut(s)	65, 837, 1194
Mox20I	TGGCCA	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	2 cut(s)	585, 674
MslI	CAYNNNNRTG	1 cut(s)	409
Msp20I	TGGCCA	1 cut(s)	641
MspI	CCGG	2 cut(s)	465, 495
MspR9I	CCNGG	3 cut(s)	339, 482, 495
MunI	CAATTG	1 cut(s)	706
MvaI	CCWGG	2 cut(s)	339, 482
MwoI	GCNNNNNNNGC	2 cut(s)	43, 110
NciI	CCSGG	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	442
NdeII	GATC	2 cut(s)	96, 1217
NlaIII	CATG	2 cut(s)	446, 1225
NlaIV	GGNNCC	9 cut(s)	458, 492, 896, 947, 998, 1049, 1100, 1151, 1219
OliI	CACNNNNGTG	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	48, 161, 197, 440
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	3 cut(s)	65, 837, 1194
PpsI	GAGTC	3 cut(s)	65, 837, 1194
PpuMI	RGGWCCY	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	337, 480
PspGI	CCWGG	2 cut(s)	337, 480
PspN4I	GGNNCC	9 cut(s)	458, 492, 896, 947, 998, 1049, 1100, 1151, 1219
PspOMI	GGGCCC	1 cut(s)	456
PspPI	GGNCC	7 cut(s)	335, 355, 398, 456, 457, 490, 711
PspPPI	RGGWCCY	1 cut(s)	490
PspXI	VCTCGAGB	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	1217
PsyI	GACNNNGTC	1 cut(s)	488
PvuI	CGATCG	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	585, 674
SatI	GCNGC	4 cut(s)	47, 160, 196, 439
Sau3AI	GATC	2 cut(s)	96, 1217
Sau96I	GGNCC	7 cut(s)	335, 355, 398, 456, 457, 490, 711
SchI	GAGTC	3 cut(s)	65, 837, 1194
ScrFI	CCNGG	3 cut(s)	339, 482, 495
SduI	GDGCHC	2 cut(s)	372, 460
SfaNI	GCATC	4 cut(s)	377, 904, 955, 1006
SfcI	CTRYAG	1 cut(s)	244
Sfr274I	CTCGAG	1 cut(s)	365
SinI	GGWCC	3 cut(s)	335, 398, 490
SlaI	CTCGAG	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	5 cut(s)	20, 391, 526, 579, 706
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	9 cut(s)	159, 401, 866, 917, 968, 1019, 1070, 1121, 1215
SspI	AATATT	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	3 cut(s)	337, 480, 493
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	7 cut(s)	873, 924, 975, 1026, 1077, 1128, 1179
TaqI	TCGA	5 cut(s)	99, 366, 612, 841, 1198
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	5 cut(s)	20, 391, 526, 579, 706
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	2 cut(s)	585, 674
Tru9I	TTAA	2 cut(s)	585, 674
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	3 cut(s)	46, 195, 438
TspDTI	ATGAA	2 cut(s)	155, 573
TspRI	CASTG	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	488
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	3 cut(s)	335, 398, 490
XapI	RAATTY	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	365
XmiI	GTMKAC	7 cut(s)	822, 873, 924, 975, 1026, 1077, 1179
ZraI	GACGTC	6 cut(s)	871, 922, 973, 1024, 1075, 1177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.