Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9362848 .. 9366255

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGATCAGTTTCTCAGTTTTTGAGATTGCTCTCATTATGAACTTTTGGGTTCACAATTACACAATCAATGTGTTATCCTGTTTTTTATCTGTAAAAATATTCTCCAGTCTTTTTGAAGAAGTTAAATCAGTTTTTTTTAGACATATATTTGCTCTAGTATCGAAGTTGTGGAATTTTATACTGTTGTCACCTCTTGCAGACAAAATCCAAAGCAAAATGGGGGAAGGTACATTTGGTCAGGTTTTAGAGTGCTGGGACAGAGAAAAAAAGGAAATGGTTGCCATAAAAATTGTTCGTGGGATCAAGAAATATCGTGAAGCAGCTATGATTGAAATTGAAATGCTGCAACAACTTGGTAAACATGACAAAGGTGGCAGCCGTTGTGTGCAATTACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCAAGAAAAACAATTACCGCTCATTTCCCATTGATCTCGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGATCTCTCTCTTATTCATACTGACTTGAAGCCAGAGAACATACTTCTTGTTTCTCAGGATTACGTTAGAGTCCCGGATTATAATAAGAGCTCATCTCGATCACCCAAAGATAGCTCTTACTATAAAAGAGTACCAAAGTCGAGTGCTATTAAGGTGATTGATTTTGGTAGCACAACTTATGAGCGTCAAGATCAGAACTATATTGTATCAACCCGTCATTACCGTGCACCAGAGGTTATTCTTGGAATGGGCTGGAGCTACCCTTGCGATGTATGGAGCATTGGTTGTATCTTAGTGGAGTTGTGCACGGGTGAGGCTTTGTTTCAGACTCATGAGAACTTGGAACACCTTGCCATGATGGAGCGGGTACTTGGTCCCCTACCCCAGCATATATTAAAGAGAGCAGACCGACATGCTGAGAAGTACGTCAGGAGAGGTAGATTGGATTGGCCAGAAGGTGCTGCCTCAAGAGAGAGTATCAAGGCTGTTCAGAAGCTTGCTCGTCTTCAGAATCTTATAATGCAGCACGTAGACCATTCAGCTGGTGATCTTATCCACCTCTTGCAGGGGCTGCTGAAGTATGATCCTTCAGATAGACTTACAGCTCGTGAAGCCCTTAGGCATTCGTTTTTTACACGGGATAATCTTAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

402

Amino Acids

46.84

Weight (kDa)

9.1

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	69 - 305	3.3e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	70 - 395	6.3e-50	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	633, 1070
AccBSI	CCGCTC	2 cut(s)	486, 916
AccI	GTMKAC	1 cut(s)	1083
AciI	CCGC	2 cut(s)	484, 916
AclWI	GGATC	2 cut(s)	308, 1130
AcoI	YGGCCR	1 cut(s)	1001
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	3 cut(s)	1043, 1125, 1148
AfaI	GTAC	4 cut(s)	229, 684, 921, 977
AfiI	CCNNNNNNNGG	1 cut(s)	1117
AgsI	TTSAA	4 cut(s)	116, 332, 338, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	9 cut(s)	323, 442, 453, 642, 666, 810, 1048, 1094, 1157
AluI	AGCT	9 cut(s)	323, 442, 453, 642, 666, 810, 1048, 1094, 1157
Alw21I	GWGCWC	3 cut(s)	644, 781, 860
Alw44I	GTGCAC	2 cut(s)	777, 856
AlwI	GGATC	2 cut(s)	308, 1130
AlwNI	CAGNNNCTG	1 cut(s)	1123
AoxI	GGCC	1 cut(s)	1001
ApaLI	GTGCAC	2 cut(s)	777, 856
ApeKI	GCWGC	6 cut(s)	320, 343, 375, 1013, 1075, 1123
ApoI	RAATTY	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	446, 926
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	5 cut(s)	180, 645, 718, 875, 1109
AvaII	GGWCC	2 cut(s)	446, 926
AxyI	CCTNAGG	1 cut(s)	1169
BaeGI	GKGCMC	2 cut(s)	781, 860
BalI	TGGCCA	1 cut(s)	1003
BanII	GRGCYC	1 cut(s)	644
BauI	CACGAG	1 cut(s)	1158
BbsI	GAAGAC	1 cut(s)	1049
Bbv12I	GWGCWC	3 cut(s)	644, 781, 860
BbvI	GCAGC	6 cut(s)	330, 332, 387, 1000, 1087, 1110
BccI	CCATC	1 cut(s)	904
BceAI	ACGGC	1 cut(s)	363
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	626
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	6 cut(s)	321, 344, 376, 1014, 1076, 1124
BlsI	GCNGC	6 cut(s)	322, 345, 377, 1015, 1077, 1125
Bme1390I	CCNGG	1 cut(s)	626
Bme18I	GGWCC	2 cut(s)	446, 926
BmgT120I	GGNCC	2 cut(s)	446, 926
BmiI	GGNNCC	1 cut(s)	928
BmrFI	CCNGG	1 cut(s)	626
BpiI	GAAGAC	1 cut(s)	1049
BplI	GAGNNNNNCTC	2 cut(s)	631, 663
BpmI	CTGGAG	2 cut(s)	88, 826
BpuEI	CTTGAG	2 cut(s)	452, 1003
BpuMI	CCSGG	1 cut(s)	626
BsaAI	YACGTR	1 cut(s)	1081
BsaXI	ACNNNNNCTCC	2 cut(s)	820, 850
Bsc4I	CCNNNNNNNGG	1 cut(s)	1117
Bse1I	ACTGG	2 cut(s)	105, 404
Bse21I	CCTNAGG	1 cut(s)	1169
BseLI	CCNNNNNNNGG	1 cut(s)	1117
BseMII	CTCAG	3 cut(s)	27, 620, 960
BseNI	ACTGG	2 cut(s)	105, 404
BseSI	GKGCMC	2 cut(s)	781, 860
BseXI	GCAGC	6 cut(s)	330, 332, 387, 1000, 1087, 1110
BseYI	CCCAGC	2 cut(s)	252, 936
BshFI	GGCC	1 cut(s)	1003
BsiHKAI	GWGCWC	3 cut(s)	644, 781, 860
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	3 cut(s)	269, 608, 912
BslI	CCNNNNNNNGG	1 cut(s)	1117
BsmFI	GGGAC	3 cut(s)	269, 608, 912
BsmI	GAATGC	2 cut(s)	542, 1174
BsnI	GGCC	1 cut(s)	1003
Bsp1286I	GDGCHC	3 cut(s)	644, 781, 860
Bsp143I	GATC	8 cut(s)	3, 300, 499, 553, 650, 742, 1099, 1135
BspACI	CCGC	2 cut(s)	484, 916
BspANI	GGCC	1 cut(s)	1003
BspCNI	CTCAG	3 cut(s)	26, 619, 961
BspHI	TCATGA	1 cut(s)	883
BspLI	GGNNCC	1 cut(s)	928
BspPI	GGATC	2 cut(s)	308, 1130
BsrBI	CCGCTC	2 cut(s)	486, 916
BsrI	ACTGG	2 cut(s)	105, 404
BssMI	GATC	8 cut(s)	3, 300, 499, 553, 650, 742, 1099, 1135
BssSI	CACGAG	1 cut(s)	1158
Bst2BI	CACGAG	1 cut(s)	1158
Bst4CI	ACNGT	3 cut(s)	183, 528, 776
BstAPI	GCANNNNNTGC	1 cut(s)	1123
BstBAI	YACGTR	1 cut(s)	1081
BstC8I	GCNNGC	1 cut(s)	1050
BstDEI	CTNAG	6 cut(s)	13, 606, 844, 969, 1169, 1199
BstENI	CCTNNNNNAGG	1 cut(s)	1115
BstKTI	GATC	8 cut(s)	6, 303, 502, 556, 653, 745, 1102, 1138
BstMBI	GATC	8 cut(s)	3, 300, 499, 553, 650, 742, 1099, 1135
BstMWI	GCNNNNNNNGC	3 cut(s)	816, 1123, 1163
BstNSI	RCATGY	1 cut(s)	968
BstSCI	CCNGG	1 cut(s)	624
BstSLI	GKGCMC	2 cut(s)	781, 860
BstV1I	GCAGC	6 cut(s)	330, 332, 387, 1000, 1087, 1110
BstV2I	GAAGAC	1 cut(s)	1049
BstXI	CCANNNNNNTGG	1 cut(s)	1094
Bsu36I	CCTNAGG	1 cut(s)	1169
BsuRI	GGCC	1 cut(s)	1003
BtgZI	GCGATG	1 cut(s)	834
Cac8I	GCNNGC	1 cut(s)	1050
CaiI	CAGNNNCTG	1 cut(s)	1123
CciI	TCATGA	1 cut(s)	883
Cfr13I	GGNCC	2 cut(s)	446, 926
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	4 cut(s)	228, 683, 920, 976
CviAII	CATG	6 cut(s)	362, 547, 551, 884, 907, 965
CviQI	GTAC	4 cut(s)	228, 683, 920, 976
DdeI	CTNAG	6 cut(s)	13, 606, 844, 969, 1169, 1199
DpnI	GATC	8 cut(s)	5, 302, 501, 555, 652, 744, 1101, 1137
DpnII	GATC	8 cut(s)	3, 300, 499, 553, 650, 742, 1099, 1135
EaeI	YGGCCR	1 cut(s)	1001
Ecl136II	GAGCTC	1 cut(s)	642
Eco24I	GRGCYC	1 cut(s)	644
Eco47I	GGWCC	2 cut(s)	446, 926
Eco53kI	GAGCTC	1 cut(s)	642
Eco57I	CTGAAG	3 cut(s)	1043, 1125, 1148
Eco81I	CCTNAGG	1 cut(s)	1169
EcoICRI	GAGCTC	1 cut(s)	642
EcoNI	CCTNNNNNAGG	1 cut(s)	1115
EcoT22I	ATGCAT	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	644
FaeI	CATG	6 cut(s)	365, 550, 554, 887, 910, 968
FaqI	GGGAC	3 cut(s)	269, 608, 912
FatI	CATG	6 cut(s)	361, 546, 550, 883, 906, 964
FauI	CCCGC	1 cut(s)	909
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	1083
Fnu4HI	GCNGC	6 cut(s)	321, 344, 376, 1014, 1076, 1124
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	6 cut(s)	321, 344, 376, 1014, 1076, 1124
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	6 cut(s)	321, 344, 376, 1014, 1076, 1124
GsaI	CCCAGC	2 cut(s)	256, 940
GsuI	CTGGAG	2 cut(s)	88, 826
HaeIII	GGCC	1 cut(s)	1003
HapII	CCGG	1 cut(s)	626
HgaI	GACGC	1 cut(s)	725
Hin1II	CATG	6 cut(s)	365, 550, 554, 887, 910, 968
HindIII	AAGCTT	3 cut(s)	440, 451, 1046
HinfI	GANTC	3 cut(s)	621, 880, 1063
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	5 cut(s)	180, 645, 718, 875, 1109
Hpy166II	GTNNAC	5 cut(s)	52, 359, 779, 858, 1084
Hpy188I	TCNGA	5 cut(s)	747, 879, 1044, 1062, 1144
Hpy8I	GTNNAC	5 cut(s)	52, 359, 779, 858, 1084
HpyAV	CCTTC	3 cut(s)	218, 1001, 1149
HpyCH4III	ACNGT	3 cut(s)	183, 528, 776
HpyCH4IV	ACGT	3 cut(s)	615, 978, 1080
HpyCH4V	TGCA	8 cut(s)	197, 346, 388, 550, 779, 858, 1075, 1117
HpyF10VI	GCNNNNNNNGC	3 cut(s)	816, 1123, 1163
HpyF3I	CTNAG	6 cut(s)	13, 606, 844, 969, 1169, 1199
HpySE526I	ACGT	3 cut(s)	615, 978, 1080
Hsp92II	CATG	6 cut(s)	365, 550, 554, 887, 910, 968
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	8 cut(s)	3, 300, 499, 553, 650, 742, 1099, 1135
LmnI	GCTCC	3 cut(s)	807, 828, 913
Lsp1109I	GCAGC	6 cut(s)	330, 332, 387, 1000, 1087, 1110
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	3 cut(s)	615, 978, 1080
MaeIII	GTNAC	2 cut(s)	186, 413
MalI	GATC	8 cut(s)	5, 302, 501, 555, 652, 744, 1101, 1137
MbiI	CCGCTC	2 cut(s)	486, 916
MboI	GATC	8 cut(s)	3, 300, 499, 553, 650, 742, 1099, 1135
MboII	GAAGA	2 cut(s)	128, 1049
MhlI	GDGCHC	3 cut(s)	644, 781, 860
MlsI	TGGCCA	1 cut(s)	1003
MluCI	AATT	6 cut(s)	55, 172, 288, 333, 389, 478
MluNI	TGGCCA	1 cut(s)	1003
MlyI	GAGTC	2 cut(s)	630, 874
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	6 cut(s)	201, 778, 859, 980, 1027, 1121
Mox20I	TGGCCA	1 cut(s)	1003
Mph1103I	ATGCAT	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	1003
MseI	TTAA	3 cut(s)	123, 702, 947
MslI	CAYNNNNRTG	1 cut(s)	774
Msp20I	TGGCCA	1 cut(s)	1003
MspA1I	CMGCKG	1 cut(s)	1094
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	626
Mva1269I	GAATGC	2 cut(s)	542, 1174
MwoI	GCNNNNNNNGC	3 cut(s)	816, 1123, 1163
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	8 cut(s)	3, 300, 499, 553, 650, 742, 1099, 1135
NlaIII	CATG	6 cut(s)	365, 550, 554, 887, 910, 968
NlaIV	GGNNCC	1 cut(s)	928
NmuCI	GTSAC	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	1 cut(s)	968
PagI	TCATGA	1 cut(s)	883
PctI	GAATGC	2 cut(s)	542, 1174
PfeI	GAWTC	1 cut(s)	1063
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	6 cut(s)	322, 345, 377, 1015, 1077, 1125
PleI	GAGTC	2 cut(s)	629, 874
PpsI	GAGTC	2 cut(s)	629, 874
Ppu21I	YACGTR	1 cut(s)	1081
PsiI	TTATAA	2 cut(s)	633, 1070
Psp124BI	GAGCTC	1 cut(s)	644
PspFI	CCCAGC	2 cut(s)	252, 936
PspN4I	GGNNCC	1 cut(s)	928
PspPI	GGNCC	2 cut(s)	446, 926
PstNI	CAGNNNCTG	1 cut(s)	1123
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	4 cut(s)	229, 684, 921, 977
RsaNI	GTAC	4 cut(s)	228, 683, 920, 976
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	3 cut(s)	123, 702, 947
SatI	GCNGC	6 cut(s)	321, 344, 376, 1014, 1076, 1124
Sau3AI	GATC	8 cut(s)	3, 300, 499, 553, 650, 742, 1099, 1135
Sau96I	GGNCC	2 cut(s)	446, 926
SchI	GAGTC	2 cut(s)	630, 874
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	3 cut(s)	644, 781, 860
SinI	GGWCC	2 cut(s)	446, 926
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	2 cut(s)	467, 1018
SmoI	CTYRAG	2 cut(s)	467, 1018
Sse9I	AATT	6 cut(s)	55, 172, 288, 333, 389, 478
SsiI	CCGC	2 cut(s)	484, 916
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	624
TaaI	ACNGT	3 cut(s)	183, 528, 776
TaiI	ACGT	3 cut(s)	618, 981, 1083
TaqI	TCGA	3 cut(s)	161, 649, 692
TaqII	GACCGA	1 cut(s)	975
TasI	AATT	6 cut(s)	55, 172, 288, 333, 389, 478
TfiI	GAWTC	1 cut(s)	1063
Tru1I	TTAA	3 cut(s)	123, 702, 947
Tru9I	TTAA	3 cut(s)	123, 702, 947
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	6 cut(s)	320, 343, 375, 1013, 1075, 1123
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	3 cut(s)	53, 535, 557
TspGWI	ACGGA	2 cut(s)	409, 497
VneI	GTGCAC	2 cut(s)	777, 856
VpaK11BI	GGWCC	2 cut(s)	446, 926
XagI	CCTNNNNNAGG	1 cut(s)	1115
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	968
XmiI	GTMKAC	1 cut(s)	1083
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.