Rh7BG250500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
N/A
Physical Location & Seq
Reverse (-)
22676135 .. 22688711
12577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG250500.1

Sequence Viewer

Length: 498 bp
ATGTCAAGTCGGGGCCTCGATGTAGAAGACGAACAAACCTCAACCTTTCTCTACTCTCTACGAACCAAGGATGCTAAGGAGAATGATGCTGATCATAGCGTTTATAAGGGAAAAGTTCTGCTCATTGTCAAGGAGTCAAGATACTGGTTTTCCCTTGCAATAAGTTTGCTGCACAGGAACCCGAAAGTAATGAAGAGATTGAAGAGTTTGTCTTCCCCTCGTTTCAGATCAGAATTTCCGATATTTGACAATGTCGATCCTAAACATGTTCATGGCATAAAGACAGCTGTTGGGAGTCTCATGAAATGGGATCTCAGCACAGCTAAGCAAGGTGGAGTAGTGGAGGATGTAGCGCTTGAAGCAATCGAGTTTGCATCTTCCCTCAATAATTTAGAGTTGCCCAAGTGTCCAAGAATCTTTGATGTGGGATTGGGCTACTTAGCATATGGCTCTACCTCTAAGACCTTGAGGAAATTGGTCGTGAAAGATAGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

9.12

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AclWI GGATC 2 cut(s) 251, 318
AcsI RAATTY 1 cut(s) 233
AfeI AGCGCT 1 cut(s) 354
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 2 cut(s) 202, 359
AluBI AGCT 2 cut(s) 287, 323
AluI AGCT 2 cut(s) 287, 323
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 2 cut(s) 251, 318
Aor51HI AGCGCT 1 cut(s) 354
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 33, 204
BbvI GCAGC 1 cut(s) 156
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 356
BisI GCNGC 1 cut(s) 170
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 14, 179
BmsI GCATC 3 cut(s) 61, 76, 383
BpiI GAAGAC 2 cut(s) 33, 204
Bpu10I CCTNAGC 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 487
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 149
Bse8I GATNNNNATC 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 76, 352
BseJI GATNNNNATC 1 cut(s) 90
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 4 cut(s) 91, 227, 256, 310
Bsp1720I GCTNAGC 1 cut(s) 324
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 327
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 14, 179
BspPI GGATC 2 cut(s) 251, 318
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 4 cut(s) 91, 227, 256, 310
BssT1I CCWWGG 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 188, 197
BstDEI CTNAG 5 cut(s) 75, 314, 324, 439, 459
BstF5I GGATG 2 cut(s) 76, 352
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 4 cut(s) 94, 230, 259, 313
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 4 cut(s) 91, 227, 256, 310
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 2 cut(s) 33, 204
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 76, 352
CciI TCATGA 1 cut(s) 300
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 3 cut(s) 266, 272, 301
CviJI RGCY 5 cut(s) 15, 287, 323, 435, 450
CviKI_1 RGCY 5 cut(s) 15, 287, 323, 435, 450
DdeI CTNAG 5 cut(s) 75, 314, 324, 439, 459
DpnI GATC 4 cut(s) 93, 229, 258, 312
DpnII GATC 4 cut(s) 91, 227, 256, 310
Eam1104I CTCTTC 2 cut(s) 188, 197
EarI CTCTTC 2 cut(s) 188, 197
Eco130I CCWWGG 1 cut(s) 66
Eco47III AGCGCT 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 3 cut(s) 269, 275, 304
FaiI YATR 8 cut(s) 96, 105, 267, 273, 278, 302, 445, 447
FatI CATG 3 cut(s) 265, 271, 300
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 2 cut(s) 83, 359
Fsp4HI GCNGC 1 cut(s) 170
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 1 cut(s) 15
HhaI GCGC 1 cut(s) 355
Hin1II CATG 3 cut(s) 269, 275, 304
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 3 cut(s) 134, 295, 414
Hpy188I TCNGA 3 cut(s) 227, 232, 240
Hpy188III TCNNGA 3 cut(s) 138, 301, 481
HpyCH4V TGCA 3 cut(s) 158, 172, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 5 cut(s) 75, 314, 324, 439, 459
Hsp92II CATG 3 cut(s) 269, 275, 304
HspAI GCGC 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 4 cut(s) 91, 227, 256, 310
LpnPI CCDG 2 cut(s) 130, 160
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 3 cut(s) 61, 76, 383
MalI GATC 4 cut(s) 93, 229, 258, 312
MboI GATC 4 cut(s) 91, 227, 256, 310
MboII GAAGA 5 cut(s) 38, 204, 205, 214, 369
MflI RGATCY 1 cut(s) 310
MluCI AATT 3 cut(s) 233, 388, 473
MlyI GAGTC 2 cut(s) 143, 304
MnlI CCTC 7 cut(s) 26, 49, 228, 337, 392, 462, 466
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeI CATATG 1 cut(s) 445
NdeII GATC 4 cut(s) 91, 227, 256, 310
NlaIII CATG 3 cut(s) 269, 275, 304
NlaIV GGNNCC 2 cut(s) 14, 179
NspI RCATGY 1 cut(s) 269
PagI TCATGA 1 cut(s) 300
PciI ACATGT 1 cut(s) 265
PfeI GAWTC 1 cut(s) 414
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 2 cut(s) 142, 303
PpsI GAGTC 2 cut(s) 142, 303
PscI ACATGT 1 cut(s) 265
PsiI TTATAA 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 14, 179
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 310
PsyI GACNNNGTC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 270
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 4 cut(s) 91, 227, 256, 310
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 2 cut(s) 143, 304
SetI ASST 7 cut(s) 41, 47, 289, 325, 334, 458, 467
SfaNI GCATC 3 cut(s) 61, 76, 383
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
Sse9I AATT 3 cut(s) 233, 388, 473
StyI CCWWGG 1 cut(s) 66
TaqI TCGA 3 cut(s) 18, 255, 366
TasI AATT 3 cut(s) 233, 388, 473
TfiI GAWTC 1 cut(s) 414
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 3 cut(s) 206, 260, 317
Tth111I GACNNNGTC 1 cut(s) 251
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.