Rh7BG356100

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
N/A
Physical Location & Seq
Reverse (-)
37407655 .. 37408222
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG356100.1

Sequence Viewer

Length: 381 bp
ATGTTGTTGAAAATACTGGAGCTGCAGCAAGCACGGGATGTGAAGGAGACATTGCTTTTGGCAAGGTCACTACAGCCTCCTCCACCACTGCCACTGCCACCACCAGTGCCTCAGTTTGAATTTGAATCTGTAGAAAGGGATATAACAGAGACCATACCGAGTGAGATAGTTTCAGTAAGGAGTATAGAGAAGGTGCCCCCACCTCAACGAAATGGCCTGGTACAAGTGGTAACCGAAGGGACAGCAGCCCTGGGGGAGATCTTTGATGTCGTTATGGAAGTGAAGAATAAGACTTTGATGGCTAAGTCTCTCATCAGAGACCTCAAATCAACCACTGCTTGGATTTCCCAAAGGTACAGATGCAGGCAGACCGCAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

7.86

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 339
AciI CCGC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 222, 356
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 3 cut(s) 10, 119, 125
AjnI CCWGG 2 cut(s) 216, 249
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw26I GTCTC 4 cut(s) 41, 143, 312, 312
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 4 cut(s) 22, 25, 245, 374
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 40, 72
BaeGI GKGCMC 1 cut(s) 198
BanI GGYRCC 1 cut(s) 193
BbvI GCAGC 3 cut(s) 9, 37, 257
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 218, 251
BcoDI GTCTC 4 cut(s) 41, 143, 312, 312
BfmI CTRYAG 3 cut(s) 23, 71, 129
BglII AGATCT 1 cut(s) 258
BisI GCNGC 4 cut(s) 23, 26, 246, 375
BlsI GCNGC 4 cut(s) 24, 27, 247, 376
Bme1390I CCNGG 2 cut(s) 218, 251
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 218, 251
BmsI GCATC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 38
BsaI GGTCTC 2 cut(s) 143, 312
BsaJI CCNNGG 2 cut(s) 249, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 2 cut(s) 21, 104
Bse3DI GCAATG 1 cut(s) 50
BseBI CCWGG 2 cut(s) 218, 251
BseDI CCNNGG 2 cut(s) 249, 250
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 2 cut(s) 21, 104
BseRI GAGGAG 1 cut(s) 69
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 3 cut(s) 9, 37, 257
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 193
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 4 cut(s) 41, 143, 312, 312
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 216
Bso31I GGTCTC 2 cut(s) 143, 312
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 193
BspTNI GGTCTC 2 cut(s) 143, 312
BsrDI GCAATG 1 cut(s) 50
BsrI ACTGG 2 cut(s) 21, 104
BssECI CCNNGG 2 cut(s) 249, 250
BssMI GATC 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 218, 251
BstC8I GCNNGC 2 cut(s) 30, 365
BstDEI CTNAG 2 cut(s) 111, 303
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 4 cut(s) 41, 143, 312, 312
BstMBI GATC 1 cut(s) 258
BstNI CCWGG 2 cut(s) 218, 251
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 216, 249
BstSFI CTRYAG 3 cut(s) 23, 71, 129
BstSLI GKGCMC 1 cut(s) 198
BstV1I GCAGC 3 cut(s) 9, 37, 257
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 3 cut(s) 86, 92, 333
BtsIMutI CAGTG 4 cut(s) 86, 92, 111, 333
Cac8I GCNNGC 2 cut(s) 30, 365
Csp6I GTAC 2 cut(s) 221, 355
CviJI RGCY 5 cut(s) 22, 76, 216, 248, 302
CviKI_1 RGCY 5 cut(s) 22, 76, 216, 248, 302
CviQI GTAC 2 cut(s) 221, 355
DdeI CTNAG 2 cut(s) 111, 303
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eco31I GGTCTC 2 cut(s) 143, 312
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 216, 249
FaiI YATR 4 cut(s) 143, 155, 185, 275
FaqI GGGAC 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 23, 26, 246, 375
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 4 cut(s) 23, 26, 246, 375
GluI GCNGC 4 cut(s) 23, 26, 246, 375
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 216
HinfI GANTC 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 37, 184, 230
HpyCH4V TGCA 2 cut(s) 25, 363
HpyF3I CTNAG 2 cut(s) 111, 303
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 7 cut(s) 2, 117, 203, 230, 236, 263, 349
Lsp1109I GCAGC 3 cut(s) 9, 37, 257
LweI GCATC 1 cut(s) 350
MaeIII GTNAC 2 cut(s) 66, 229
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 295
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 119
MnlI CCTC 5 cut(s) 87, 90, 120, 213, 332
MspR9I CCNGG 2 cut(s) 218, 251
MvaI CCWGG 2 cut(s) 218, 251
NdeII GATC 1 cut(s) 258
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 66
PasI CCCWGGG 1 cut(s) 250
PfeI GAWTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 4 cut(s) 24, 27, 247, 376
Psp6I CCWGG 2 cut(s) 216, 249
PspEI GGTNACC 1 cut(s) 229
PspGI CCWGG 2 cut(s) 216, 249
PspN4I GGNNCC 1 cut(s) 195
PstI CTGCAG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 258
RsaI GTAC 2 cut(s) 222, 356
RsaNI GTAC 2 cut(s) 221, 355
SatI GCNGC 4 cut(s) 23, 26, 246, 375
Sau3AI GATC 1 cut(s) 258
ScrFI CCNGG 2 cut(s) 218, 251
SduI GDGCHC 1 cut(s) 198
SetI ASST 6 cut(s) 24, 68, 195, 205, 324, 356
SfaNI GCATC 1 cut(s) 350
SfcI CTRYAG 3 cut(s) 23, 71, 129
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 216, 249
TasI AATT 1 cut(s) 119
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 4 cut(s) 93, 99, 111, 340
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 4 cut(s) 22, 25, 245, 374
Tsp45I GTSAC 1 cut(s) 66
TspRI CASTG 4 cut(s) 93, 99, 111, 340
Van91I CCANNNNNTGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.