Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

40565369 .. 40565776

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG377200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTTCGCCGGTCGTTGACAAAGAGTACCTCAAAGAAATCGATAAGGCTAGCCGTGATCTCCGTGCTCTCATTTCTGGCGAAGCGTACTCTCTCTCTCTCTGCCATGGTGGCTCCAAAACCGGAGGACAAAGGCCACCAACGCGGGACCTCCATCAGACGACGGCAAGACCAACGCTTCGTCTGACGTCGACTGATCACTGCGCCCAGACCCCGATTGGATCGAAACTGGAGGACGAATCCAATTGCCTCCCCCGACCTAGCCCTTCGTACTCGACCCCAGTCGCCGCCACCAGGGCTTATGATACCGCTGTCTTTTACTTGAGGGGCTCGTCGGCGGGATGCAATTTTCCCGAGGCCTTGGAGGTCGGCGGCCTCGATAAGGGGGAAATGATGAAGCTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

135

Amino Acids

14.53

Weight (kDa)

6.82

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	191
AccII	CGCG	1 cut(s)	145
AciI	CCGC	5 cut(s)	145, 288, 309, 338, 372
AclWI	GGATC	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	3 cut(s)	29, 89, 272
AfiI	CCNNNNNNNGG	2 cut(s)	294, 382
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	3 cut(s)	134, 357, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	148
AsuNHI	GCTAGC	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	148
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BanII	GRGCYC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	2 cut(s)	39, 180
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	2 cut(s)	51, 261
BglI	GCCNNNNNGGC	2 cut(s)	111, 296
BisI	GCNGC	2 cut(s)	288, 373
BlsI	GCNGC	2 cut(s)	289, 374
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	115, 149
BmrFI	CCNGG	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	332
BmtI	GCTAGC	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	275
BoxI	GACNNNNGTC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	4 cut(s)	106, 294, 354, 360
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 382
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	2 cut(s)	234, 281
BseBI	CCWGG	1 cut(s)	295
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	4 cut(s)	106, 294, 354, 360
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	294, 382
BseNI	ACTGG	2 cut(s)	234, 281
Bsh1236I	CGCG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	136, 359, 375
BshVI	ATCGAT	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	11, 123
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	294, 382
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	136, 359, 375
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	70, 332
Bsp143I	GATC	3 cut(s)	58, 196, 221
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	5 cut(s)	145, 288, 309, 338, 372
BspANI	GGCC	3 cut(s)	136, 359, 375
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	115, 149
BspOI	GCTAGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	234, 281
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	4 cut(s)	106, 294, 354, 360
BssMI	GATC	3 cut(s)	58, 196, 221
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	2 cut(s)	106, 360
Bst2UI	CCWGG	1 cut(s)	295
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	106
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	347
BstFNI	CGCG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	3 cut(s)	61, 199, 224
BstMBI	GATC	3 cut(s)	58, 196, 221
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 142, 296
BstNI	CCWGG	1 cut(s)	295
BstPAI	GACNNNNGTC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	136, 359, 375
BsuTUI	ATCGAT	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	3 cut(s)	28, 88, 271
CviAII	CATG	1 cut(s)	107
CviQI	GTAC	3 cut(s)	28, 88, 271
DpnI	GATC	3 cut(s)	60, 198, 223
DpnII	GATC	3 cut(s)	58, 196, 221
Eco130I	CCWWGG	2 cut(s)	106, 360
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	353
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	106, 360
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	2 cut(s)	106, 360
FaeI	CATG	1 cut(s)	110
FaiI	YATR	3 cut(s)	108, 303, 406
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	106
FauI	CCCGC	2 cut(s)	138, 331
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	2 cut(s)	288, 373
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	288, 373
FspBI	CTAG	2 cut(s)	51, 261
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	2 cut(s)	288, 373
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	136, 359, 375
HapII	CCGG	2 cut(s)	11, 123
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	2 cut(s)	19, 192
HindII	GTYRAC	2 cut(s)	19, 192
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	2 cut(s)	11, 123
Hpy166II	GTNNAC	2 cut(s)	19, 192
Hpy188I	TCNGA	2 cut(s)	159, 186
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	19, 192
Hpy99I	CGWCG	3 cut(s)	166, 193, 337
HpyAV	CCTTC	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 142, 296
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	110
HspAI	GCGC	1 cut(s)	204
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	58, 196, 221
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	8 cut(s)	24, 63, 136, 215, 221, 280, 294, 307
LweI	GCATC	1 cut(s)	332
MaeI	CTAG	2 cut(s)	51, 261
MaeII	ACGT	1 cut(s)	188
MalI	GATC	3 cut(s)	60, 198, 223
MboI	GATC	3 cut(s)	58, 196, 221
MfeI	CAATTG	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	70, 332
MluCI	AATT	2 cut(s)	244, 346
MnlI	CCTC	9 cut(s)	41, 119, 161, 226, 260, 318, 349, 358, 386
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	2 cut(s)	11, 123
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	111, 142, 296
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	3 cut(s)	58, 196, 221
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	115, 149
PceI	AGGCCT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	289, 374
PpuMI	RGGWCCY	1 cut(s)	148
PshAI	GACNNNNGTC	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	115, 149
PspPI	GGNCC	1 cut(s)	148
PspPPI	RGGWCCY	1 cut(s)	148
RsaI	GTAC	3 cut(s)	29, 89, 272
RsaNI	GTAC	3 cut(s)	28, 88, 271
SalI	GTCGAC	1 cut(s)	190
SatI	GCNGC	2 cut(s)	288, 373
Sau3AI	GATC	3 cut(s)	58, 196, 221
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	70, 332
SetI	ASST	6 cut(s)	33, 153, 191, 262, 369, 402
SfaNI	GCATC	1 cut(s)	332
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	244, 346
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	5 cut(s)	145, 288, 309, 338, 372
SspMI	CTAG	2 cut(s)	51, 261
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	106, 360
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	5 cut(s)	42, 191, 224, 275, 378
TasI	AATT	2 cut(s)	244, 346
TauI	GCSGC	2 cut(s)	290, 375
TfiI	GAWTC	1 cut(s)	239
TscAI	CASTG	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	2 cut(s)	51, 261
ZraI	GACGTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.