Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

43265035 .. 43280512

Gene Structure 15478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG392300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGTACAATCAAAGAAGTTCCGAGGGGTCAGGCAACGCCACTGGGGCTCTTGGGTATCTGAGATTCGCCATCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGAGTGCAGAAGAGGCAGCACGAGCCTACGACAAGGCTGCGATTCTGATGAGTGGTCGAAATGCCAAAACAAACTTTCCTGTCACCACAAATGAAATTGCAGCTGCTAATAATAAGAACTCTATCAACAACAAGAGCAACTCCAGCAGTACTACTACTACTTCACTTTCTGCAACCCTCAGCGCCAAGCTTCTCAAGTGTTGCTCTGCTTCCCTCACTTGCCTCAGGCTCGACACCGAGAATTCCCACATCGGAGTTTGGCAAAAGCGCGCTGGGCCACGCTCAGATTCGAATTGGCTGATGATGGTGGAGCTGGGACGGAAGATTGGTTTAGAAGCGGAGAAGGTGGAGAGTACTAGCGTCCCTCAAGTGTCCGATGGACATGAAACGCAAGGATTGAACGAGGAGAAAAGGATTGCATTGCAGATGATAGAGGAACTTCTCAATGGGAGGTGTACTGCTACTGCACCGTTGCCAACTCCGGGAAGTAGGGCTGGTCCTGTGCTCCAGTTCGCTGAAGGTAGGTTCCAATTGGGTGGGACAACTTTTCAGTTTCAGTCCTCTATTCCATCTCCTGTGGCACGGTCGCTGTTTACGGACGTGCAGTTTGTCAGGCCTAGGAAGGACAAGAGGTCCGTGGTCATCAGGGATGCCGGTTCTAGGGCTTCCTCGGCGCTGGCGCTCCGGTCTCTGTCTCCGCCGTTTGCAATGTTTCCGATTTTGGTTGCATGGAAGAGATTGGACTGGTTTGCAATCTGGATGCAAGTAAAAGGTGTGCAGGTCTATGGGTTCTCTGATGCCTATCTTGTTGGTCCTTTTCTTGCTACGGTGATCATAATTTGTTTCCAGTGTCCAATGATAGATTATTTGGTTACAACTCTTCTACCAAGCAGGTGTCCAGAAACTTTCAGAGGAGGTACTGAGAGACCGGAACCACCTGGAGGAGGTTCTTTTCCTTCTGCGCAGCATGGGAAGAAATGGACACATACCTTACTGAGATTCCAAGCTAGCACACATACTGCAAAATTCTTTGGGAGGAAACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

384

Amino Acids

42.55

Weight (kDa)

10.11

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 53	2.4e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	990
Acc16I	TGCGCA	1 cut(s)	1071
Acc36I	ACCTGC	2 cut(s)	877, 990
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	446, 806
AcsI	RAATTY	2 cut(s)	349, 1133
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	5 cut(s)	6, 259, 463, 565, 1027
AfiI	CCNNNNNNNGG	4 cut(s)	590, 768, 1049, 1052
AgsI	TTSAA	2 cut(s)	82, 508
AhdI	GACNNNNNGTC	1 cut(s)	739
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	1 cut(s)	1045
AluBI	AGCT	4 cut(s)	212, 298, 421, 1115
AluI	AGCT	4 cut(s)	212, 298, 421, 1115
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	3 cut(s)	801, 807, 1027
AoxI	GGCC	2 cut(s)	383, 722
ApeKI	GCWGC	5 cut(s)	125, 146, 209, 212, 1072
ApoI	RAATTY	2 cut(s)	349, 1133
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AspA2I	CCTAGG	1 cut(s)	725
AspLEI	GCGC	6 cut(s)	293, 378, 380, 784, 790, 1072
AspS9I	GGNCC	4 cut(s)	383, 605, 741, 920
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	2 cut(s)	184, 949
AsuII	TTCGAA	1 cut(s)	398
AsuNHI	GCTAGC	1 cut(s)	1115
AvaII	GGWCC	3 cut(s)	605, 741, 920
AvrII	CCTAGG	1 cut(s)	725
AxyI	CCTNAGG	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	615
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	5 cut(s)	133, 137, 199, 221, 1084
BccI	CCATC	4 cut(s)	78, 406, 479, 685
BceAI	ACGGC	1 cut(s)	793
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	1047
BclI	TGATCA	1 cut(s)	939
BcnI	CCSGG	1 cut(s)	591
BcoDI	GTCTC	3 cut(s)	801, 807, 1027
BfaI	CTAG	5 cut(s)	465, 726, 768, 1116, 1153
BfoI	RGCGCY	3 cut(s)	294, 785, 791
BfuAI	ACCTGC	2 cut(s)	877, 990
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	5 cut(s)	126, 147, 210, 213, 1073
BlnI	CCTAGG	1 cut(s)	725
BlsI	GCNGC	5 cut(s)	127, 148, 211, 214, 1074
BmcAI	AGTACT	2 cut(s)	259, 463
Bme1390I	CCNGG	2 cut(s)	591, 1047
Bme18I	GGWCC	3 cut(s)	605, 741, 920
BmeRI	GACNNNNNGTC	1 cut(s)	739
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	4 cut(s)	383, 605, 741, 920
BmiI	GGNNCC	2 cut(s)	635, 1041
BmrFI	CCNGG	2 cut(s)	591, 1047
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	3 cut(s)	748, 858, 895
BmtI	GCTAGC	1 cut(s)	1119
BmuI	ACTGGG	1 cut(s)	52
BpmI	CTGGAG	3 cut(s)	235, 599, 1068
Bpu10I	CCTNAGC	1 cut(s)	287
Bpu14I	TTCGAA	1 cut(s)	398
BpuEI	CTTGAG	2 cut(s)	287, 459
BpuMI	CCSGG	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	909
BsaI	GGTCTC	2 cut(s)	801, 1027
BsaJI	CCNNGG	4 cut(s)	22, 725, 744, 777
BsaWI	WCCGGW	2 cut(s)	792, 1036
Bsc4I	CCNNNNNNNGG	4 cut(s)	590, 768, 1049, 1052
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	4 cut(s)	47, 616, 857, 955
Bse21I	CCTNAGG	1 cut(s)	332
Bse3DI	GCAATG	2 cut(s)	527, 822
Bse8I	GATNNNNATC	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	1047
BseDI	CCNNGG	4 cut(s)	22, 725, 744, 777
BseGI	GGATG	3 cut(s)	70, 763, 873
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	4 cut(s)	590, 768, 1049, 1052
BseMI	GCAATG	2 cut(s)	527, 822
BseMII	CTCAG	6 cut(s)	51, 301, 346, 405, 1020, 1094
BseNI	ACTGG	4 cut(s)	47, 616, 857, 955
BsePI	GCGCGC	1 cut(s)	376
BseRI	GAGGAG	3 cut(s)	527, 1035, 1065
BseXI	GCAGC	5 cut(s)	133, 137, 199, 221, 1084
BseYI	CCCAGC	2 cut(s)	380, 421
BsgI	GTGCAG	4 cut(s)	135, 558, 731, 905
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	695
BshFI	GGCC	2 cut(s)	385, 724
BsiEI	CGRYCG	1 cut(s)	695
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	4 cut(s)	590, 762, 793, 1037
BslFI	GGGAC	4 cut(s)	115, 438, 455, 661
BslI	CCNNNNNNNGG	4 cut(s)	590, 768, 1049, 1052
BsmAI	GTCTC	3 cut(s)	801, 807, 1027
BsmFI	GGGAC	4 cut(s)	115, 438, 455, 661
BsnI	GGCC	2 cut(s)	385, 724
Bso31I	GGTCTC	2 cut(s)	801, 1027
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	50, 615
Bsp143I	GATC	1 cut(s)	939
BspACI	CCGC	2 cut(s)	446, 806
BspANI	GGCC	2 cut(s)	385, 724
BspCNI	CTCAG	6 cut(s)	52, 300, 345, 404, 1021, 1095
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	635, 1041
BspMI	ACCTGC	2 cut(s)	877, 990
BspOI	GCTAGC	1 cut(s)	1119
BspT104I	TTCGAA	1 cut(s)	398
BspTNI	GGTCTC	2 cut(s)	801, 1027
BsrDI	GCAATG	2 cut(s)	527, 822
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	4 cut(s)	47, 616, 857, 955
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	4 cut(s)	22, 725, 744, 777
BssHII	GCGCGC	1 cut(s)	376
BssMI	GATC	1 cut(s)	939
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	725
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	1047
Bst4CI	ACNGT	3 cut(s)	579, 693, 937
Bst6I	CTCTTC	3 cut(s)	114, 836, 993
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	378, 786, 1117
BstDEI	CTNAG	6 cut(s)	60, 287, 332, 391, 1029, 1103
BstDSI	CCRYGG	1 cut(s)	744
BstENI	CCTNNNNNAGG	1 cut(s)	1050
BstF5I	GGATG	3 cut(s)	70, 763, 873
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	3 cut(s)	294, 785, 791
BstHHI	GCGC	6 cut(s)	293, 378, 380, 784, 790, 1072
BstKTI	GATC	1 cut(s)	942
BstMAI	GTCTC	3 cut(s)	801, 807, 1027
BstMBI	GATC	1 cut(s)	939
BstMCI	CGRYCG	1 cut(s)	695
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 122, 131, 252, 382, 779
BstNI	CCWGG	1 cut(s)	1047
BstSCI	CCNGG	2 cut(s)	589, 1045
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	133, 137, 199, 221, 1084
BstXI	CCANNNNNNTGG	1 cut(s)	644
Bsu36I	CCTNAGG	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	385, 724
BtgI	CCRYGG	1 cut(s)	744
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	3 cut(s)	70, 763, 873
BtsIMutI	CAGTG	2 cut(s)	40, 962
BveI	ACCTGC	2 cut(s)	877, 990
Cac8I	GCNNGC	3 cut(s)	378, 786, 1117
CfoI	GCGC	6 cut(s)	293, 378, 380, 784, 790, 1072
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	4 cut(s)	383, 605, 741, 920
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	5 cut(s)	5, 258, 462, 564, 1026
CviAII	CATG	3 cut(s)	491, 837, 1076
CviQI	GTAC	5 cut(s)	5, 258, 462, 564, 1026
DdeI	CTNAG	6 cut(s)	60, 287, 332, 391, 1029, 1103
DpnI	GATC	1 cut(s)	941
DpnII	GATC	1 cut(s)	939
DriI	GACNNNNNGTC	1 cut(s)	739
Eam1104I	CTCTTC	3 cut(s)	114, 836, 993
Eam1105I	GACNNNNNGTC	1 cut(s)	739
EarI	CTCTTC	3 cut(s)	114, 836, 993
EciI	GGCGGA	1 cut(s)	795
Eco130I	CCWWGG	1 cut(s)	725
Eco147I	AGGCCT	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	2 cut(s)	801, 1027
Eco47I	GGWCC	3 cut(s)	605, 741, 920
Eco57I	CTGAAG	1 cut(s)	645
Eco81I	CCTNAGG	1 cut(s)	332
EcoNI	CCTNNNNNAGG	1 cut(s)	1050
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	1045
EcoT14I	CCWWGG	1 cut(s)	725
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	3 cut(s)	494, 840, 1079
FaiI	YATR	7 cut(s)	492, 838, 894, 944, 1077, 1095, 1125
FaqI	GGGAC	4 cut(s)	115, 438, 455, 661
FatI	CATG	3 cut(s)	490, 836, 1075
FbaI	TGATCA	1 cut(s)	939
Fnu4HI	GCNGC	5 cut(s)	126, 147, 210, 213, 1073
FokI	GGATG	3 cut(s)	57, 770, 880
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	5 cut(s)	126, 147, 210, 213, 1073
FspBI	CTAG	5 cut(s)	465, 726, 768, 1116, 1153
FspI	TGCGCA	1 cut(s)	1071
GlaI	GCGC	6 cut(s)	292, 377, 379, 783, 789, 1071
GluI	GCNGC	5 cut(s)	126, 147, 210, 213, 1073
GsaI	CCCAGC	2 cut(s)	384, 425
GsuI	CTGGAG	3 cut(s)	235, 599, 1068
HaeII	RGCGCY	3 cut(s)	294, 785, 791
HaeIII	GGCC	2 cut(s)	385, 724
HapII	CCGG	4 cut(s)	590, 762, 793, 1037
HgaI	GACGC	1 cut(s)	457
HhaI	GCGC	6 cut(s)	293, 378, 380, 784, 790, 1072
Hin1II	CATG	3 cut(s)	494, 840, 1079
Hin6I	GCGC	6 cut(s)	291, 376, 378, 782, 788, 1070
HinP1I	GCGC	6 cut(s)	291, 376, 378, 782, 788, 1070
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	4 cut(s)	64, 151, 395, 1107
HpaII	CCGG	4 cut(s)	590, 762, 793, 1037
HphI	GGTGA	2 cut(s)	184, 949
Hpy166II	GTNNAC	2 cut(s)	564, 702
Hpy188I	TCNGA	9 cut(s)	23, 61, 156, 362, 394, 484, 825, 904, 1019
Hpy188III	TCNNGA	2 cut(s)	865, 1007
Hpy8I	GTNNAC	2 cut(s)	564, 702
HpyAV	CCTTC	4 cut(s)	445, 620, 724, 1074
HpyCH4III	ACNGT	3 cut(s)	579, 693, 937
HpyCH4IV	ACGT	1 cut(s)	708
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 122, 131, 252, 382, 779
HpyF3I	CTNAG	6 cut(s)	60, 287, 332, 391, 1029, 1103
HpySE526I	ACGT	1 cut(s)	708
Hsp92II	CATG	3 cut(s)	494, 840, 1079
HspAI	GCGC	6 cut(s)	291, 376, 378, 782, 788, 1070
Ksp22I	TGATCA	1 cut(s)	939
Kzo9I	GATC	1 cut(s)	939
LmnI	GCTCC	3 cut(s)	418, 618, 795
Lsp1109I	GCAGC	5 cut(s)	133, 137, 199, 221, 1084
LweI	GCATC	3 cut(s)	748, 858, 895
MaeI	CTAG	5 cut(s)	465, 726, 768, 1116, 1153
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	2 cut(s)	190, 979
MalI	GATC	1 cut(s)	941
MboI	GATC	1 cut(s)	939
MboII	GAAGA	5 cut(s)	131, 442, 853, 980, 1093
MfeI	CAATTG	1 cut(s)	638
MhlI	GDGCHC	2 cut(s)	50, 615
MluCI	AATT	6 cut(s)	204, 349, 400, 638, 945, 1133
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	4 cut(s)	590, 762, 793, 1037
MspR9I	CCNGG	2 cut(s)	591, 1047
MunI	CAATTG	1 cut(s)	638
MvaI	CCWGG	1 cut(s)	1047
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	6 cut(s)	45, 122, 131, 252, 382, 779
NciI	CCSGG	1 cut(s)	591
NdeII	GATC	1 cut(s)	939
NheI	GCTAGC	1 cut(s)	1115
NlaIII	CATG	3 cut(s)	494, 840, 1079
NlaIV	GGNNCC	2 cut(s)	635, 1041
NmeAIII	GCCGAG	1 cut(s)	758
NmuCI	GTSAC	1 cut(s)	190
NsbI	TGCGCA	1 cut(s)	1071
NspV	TTCGAA	1 cut(s)	398
PaqCI	CACCTGC	1 cut(s)	990
PauI	GCGCGC	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	724
PfeI	GAWTC	4 cut(s)	64, 151, 395, 1107
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	5 cut(s)	127, 148, 211, 214, 1074
Psp6I	CCWGG	1 cut(s)	1045
PspFI	CCCAGC	2 cut(s)	380, 421
PspGI	CCWGG	1 cut(s)	1045
PspN4I	GGNNCC	2 cut(s)	635, 1041
PspPI	GGNCC	4 cut(s)	383, 605, 741, 920
PteI	GCGCGC	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	5 cut(s)	6, 259, 463, 565, 1027
RsaNI	GTAC	5 cut(s)	5, 258, 462, 564, 1026
SatI	GCNGC	5 cut(s)	126, 147, 210, 213, 1073
Sau3AI	GATC	1 cut(s)	939
Sau96I	GGNCC	4 cut(s)	383, 605, 741, 920
ScaI	AGTACT	2 cut(s)	259, 463
ScrFI	CCNGG	2 cut(s)	591, 1047
SduI	GDGCHC	2 cut(s)	50, 615
SfaNI	GCATC	3 cut(s)	748, 858, 895
SfuI	TTCGAA	1 cut(s)	398
SinI	GGWCC	3 cut(s)	605, 741, 920
SmlI	CTYRAG	2 cut(s)	302, 474
SmoI	CTYRAG	2 cut(s)	302, 474
Sse9I	AATT	6 cut(s)	204, 349, 400, 638, 945, 1133
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	2 cut(s)	446, 806
SspMI	CTAG	5 cut(s)	465, 726, 768, 1116, 1153
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	2 cut(s)	589, 1045
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	3 cut(s)	579, 693, 937
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	3 cut(s)	166, 339, 398
TasI	AATT	6 cut(s)	204, 349, 400, 638, 945, 1133
TatI	WGTACW	3 cut(s)	257, 461, 563
TfiI	GAWTC	4 cut(s)	64, 151, 395, 1107
TscAI	CASTG	2 cut(s)	47, 962
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	5 cut(s)	125, 146, 209, 212, 1072
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	216, 507
TspGWI	ACGGA	3 cut(s)	442, 719, 733
TspRI	CASTG	2 cut(s)	47, 962
VpaK11BI	GGWCC	3 cut(s)	605, 741, 920
XagI	CCTNNNNNAGG	1 cut(s)	1050
XapI	RAATTY	2 cut(s)	349, 1133
XmaJI	CCTAGG	1 cut(s)	725
XspI	CTAG	5 cut(s)	465, 726, 768, 1116, 1153
ZrmI	AGTACT	2 cut(s)	259, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.