Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1576732 .. 1579181

Gene Structure 2450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG021600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTATTGGGCCATTGTGCATGTTGCATATGTGTGGGCTGGTACTAGAAAGCTTGTGATTGTTCAGTTGGGCCGGGAGTTGACAGTTGCTATCAAGAAGATTCGGGTTTGGAAGCAAAACGAAGGGGTGAATGAGCTGAAAGATCCGAATATTATTGAGTTGATCGACGCGTTCCCCCATAAAGGAAACCTGCATCTTGTGTTTGAGTTCATGGAGATGGACCTTGAAGCTGTTATACGTAACCATAATAGAGTCCTTTCACCAGCGGATATAAAGTCGTATATTCAGATGACGCTAAAAGGACTTGCTTTTTGTCGCAAGAAATGGGTTTTGCATAGGTATCTCTTTCGTGTTGAGAAGCACGAGTATTTGGGAGTCCAGATCGCAGGTTCACTCATCAGGTTTGCTTCTCCCTGTAATGATGGTCACCCATATGATTATGCAATAACAGTGCAAGCTTGTTATAAGCTCTTGAGCCATATGACTAGGTCTTTGCTCGATGGTATAGAGCACCTGAGCTGTTATTTGGCACCAAACAATATGGACCTGGGGTGGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTCCTACGACAACCATTTCTGCAGATTTTTTGCGGCTTTTGGGACTTCAACACCTTCTCAATGGCCTGATATGGTATACCTTCCTGACTATGTGGAATACCACCATCTGCTTTGCGTAAAAGATCCAGATAAGCTTCCAAGGCCTGCTCCAAAGAAGGAGTCCAGCAATTCTAAGGCTTCAGATTTCAATCCAAATGAGGATCCTACTGTTTTGTCACCTCCAAGAAAGTCACGGAGAGTGATGCCAGATCGGATAAGGTTGATGATCATGTTGGAGACATCCGACAGGCTGCCAGTGAAAGTACAAGCAGGAATGAACCAGTGTCAATGTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

308

Amino Acids

35.63

Weight (kDa)

8.8

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	19 - 115	6.7e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	34 - 113	1.6e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
Acc36I	ACCTGC	2 cut(s)	198, 377
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	666
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	266, 623
AclWI	GGATC	4 cut(s)	137, 707, 785, 798
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	2 cut(s)	43, 894
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	227, 639, 778
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	8 cut(s)	52, 136, 230, 458, 469, 519, 588, 724
AluI	AGCT	8 cut(s)	52, 136, 230, 458, 469, 519, 588, 724
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	860
AlwI	GGATC	4 cut(s)	137, 707, 785, 798
AoxI	GGCC	4 cut(s)	9, 70, 653, 731
ApeKI	GCWGC	3 cut(s)	565, 568, 880
ArsI	GACNNNNNNTTYG	6 cut(s)	294, 326, 475, 507, 734, 766
AspS9I	GGNCC	4 cut(s)	9, 70, 220, 544
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	4 cut(s)	139, 252, 419, 798
AvaII	GGWCC	2 cut(s)	220, 544
BamHI	GGATCC	1 cut(s)	790
BanI	GGYRCC	1 cut(s)	529
BarI	GAAGNNNNNNTAC	2 cut(s)	219, 251
BauI	CACGAG	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	552, 580, 867
BccI	CCATC	4 cut(s)	211, 416, 494, 702
BciT130I	CCWGG	1 cut(s)	548
BclI	TGATCA	1 cut(s)	855
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	860
BfaI	CTAG	2 cut(s)	45, 486
BfmI	CTRYAG	2 cut(s)	566, 610
BfuAI	ACCTGC	2 cut(s)	198, 377
BisI	GCNGC	4 cut(s)	566, 569, 624, 881
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	4 cut(s)	567, 570, 625, 882
Bme1390I	CCNGG	2 cut(s)	74, 548
Bme18I	GGWCC	2 cut(s)	220, 544
BmgT120I	GGNCC	4 cut(s)	9, 70, 220, 544
BmiI	GGNNCC	2 cut(s)	531, 792
BmrFI	CCNGG	2 cut(s)	74, 548
BmsI	GCATC	2 cut(s)	202, 822
Bpu10I	CCTNAGC	1 cut(s)	515
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	547, 728
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	884, 910
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	547, 728
BseGI	GGATG	2 cut(s)	561, 869
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	506, 575
BseNI	ACTGG	2 cut(s)	884, 910
BseXI	GCAGC	3 cut(s)	552, 580, 867
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	4 cut(s)	11, 72, 655, 733
BshNI	GGYRCC	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	860
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	4 cut(s)	11, 72, 655, 733
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	7 cut(s)	142, 162, 381, 712, 790, 838, 855
Bsp1720I	GCTNAGC	1 cut(s)	584
BspACI	CCGC	2 cut(s)	266, 623
BspANI	GGCC	4 cut(s)	11, 72, 655, 733
BspCNI	CTCAG	2 cut(s)	507, 576
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	531, 792
BspMAI	CTGCAG	2 cut(s)	570, 614
BspMI	ACCTGC	2 cut(s)	198, 377
BspPI	GGATC	4 cut(s)	137, 707, 785, 798
BspT107I	GGYRCC	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	884, 910
BssECI	CCNNGG	2 cut(s)	547, 728
BssMI	GATC	7 cut(s)	142, 162, 381, 712, 790, 838, 855
BssNAI	GTATAC	1 cut(s)	667
BssSI	CACGAG	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	728
Bst1107I	GTATAC	1 cut(s)	667
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	3 cut(s)	85, 451, 799
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	456, 735
BstDEI	CTNAG	3 cut(s)	515, 584, 762
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	2 cut(s)	561, 869
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	7 cut(s)	145, 165, 384, 715, 793, 841, 858
BstMAI	GTCTC	1 cut(s)	860
BstMBI	GATC	7 cut(s)	142, 162, 381, 712, 790, 838, 855
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	23
BstPI	GGTNACC	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	72, 546
BstSFI	CTRYAG	2 cut(s)	566, 610
BstSNI	TACGTA	1 cut(s)	239
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	552, 580, 867
BstX2I	RGATCY	3 cut(s)	142, 712, 790
BstYI	RGATCY	3 cut(s)	142, 712, 790
BstZ17I	GTATAC	1 cut(s)	667
BsuRI	GGCC	4 cut(s)	11, 72, 655, 733
BtsCI	GGATG	2 cut(s)	561, 869
BtsIMutI	CAGTG	3 cut(s)	456, 891, 917
BveI	ACCTGC	2 cut(s)	198, 377
Cac8I	GCNNGC	2 cut(s)	456, 735
Cfr13I	GGNCC	4 cut(s)	9, 70, 220, 544
CseI	GACGC	2 cut(s)	176, 301
Csp6I	GTAC	2 cut(s)	42, 893
CviAII	CATG	3 cut(s)	20, 211, 859
CviQI	GTAC	2 cut(s)	42, 893
DdeI	CTNAG	3 cut(s)	515, 584, 762
DpnI	GATC	7 cut(s)	144, 164, 383, 714, 792, 840, 857
DpnII	GATC	7 cut(s)	142, 162, 381, 712, 790, 838, 855
Eco105I	TACGTA	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	728
Eco147I	AGGCCT	1 cut(s)	733
Eco47I	GGWCC	2 cut(s)	220, 544
Eco57I	CTGAAG	1 cut(s)	753
Eco91I	GGTNACC	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	728
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	3 cut(s)	23, 214, 862
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	3 cut(s)	19, 210, 858
FauNDI	CATATG	3 cut(s)	28, 433, 480
FbaI	TGATCA	1 cut(s)	855
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	4 cut(s)	566, 569, 624, 881
FokI	GGATG	2 cut(s)	568, 856
Fsp4HI	GCNGC	4 cut(s)	566, 569, 624, 881
FspBI	CTAG	2 cut(s)	45, 486
GluI	GCNGC	4 cut(s)	566, 569, 624, 881
HaeIII	GGCC	4 cut(s)	11, 72, 655, 733
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	2 cut(s)	176, 301
Hin1II	CATG	3 cut(s)	23, 214, 862
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	3 cut(s)	50, 456, 722
HinfI	GANTC	4 cut(s)	100, 252, 375, 749
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	4 cut(s)	139, 252, 419, 798
Hpy166II	GTNNAC	3 cut(s)	81, 392, 667
Hpy188I	TCNGA	5 cut(s)	147, 288, 772, 843, 874
Hpy188III	TCNNGA	5 cut(s)	94, 379, 472, 674, 716
Hpy8I	GTNNAC	3 cut(s)	81, 392, 667
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	4 cut(s)	116, 654, 680, 739
HpyCH4III	ACNGT	3 cut(s)	85, 451, 799
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	8 cut(s)	19, 26, 193, 334, 443, 454, 568, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	3 cut(s)	515, 584, 762
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	23, 214, 862
Ksp22I	TGATCA	1 cut(s)	855
Kzo9I	GATC	7 cut(s)	142, 162, 381, 712, 790, 838, 855
LmnI	GCTCC	1 cut(s)	742
Lsp1109I	GCAGC	3 cut(s)	552, 580, 867
LweI	GCATC	2 cut(s)	202, 822
MaeI	CTAG	2 cut(s)	45, 486
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	4 cut(s)	239, 425, 804, 819
MalI	GATC	7 cut(s)	144, 164, 383, 714, 792, 840, 857
MboI	GATC	7 cut(s)	142, 162, 381, 712, 790, 838, 855
MboII	GAAGA	1 cut(s)	109
MflI	RGATCY	3 cut(s)	142, 712, 790
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	1 cut(s)	757
MluI	ACGCGT	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	261, 384, 758
MmeI	TCCRAC	2 cut(s)	843, 897
MnlI	CCTC	2 cut(s)	781, 819
MslI	CAYNNNNRTG	3 cut(s)	31, 215, 432
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	74, 548
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	730
NciI	CCSGG	1 cut(s)	74
NdeI	CATATG	3 cut(s)	28, 433, 480
NdeII	GATC	7 cut(s)	142, 162, 381, 712, 790, 838, 855
NlaIII	CATG	3 cut(s)	23, 214, 862
NlaIV	GGNNCC	2 cut(s)	531, 792
NmuCI	GTSAC	3 cut(s)	425, 804, 819
NspI	RCATGY	1 cut(s)	23
PceI	AGGCCT	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	100
PflFI	GACNNNGTC	1 cut(s)	487
PkrI	GCNGC	4 cut(s)	567, 570, 625, 882
PleI	GAGTC	3 cut(s)	260, 383, 757
PpsI	GAGTC	3 cut(s)	260, 383, 757
Ppu21I	YACGTR	1 cut(s)	239
PsiI	TTATAA	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	546
PspEI	GGTNACC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	531, 792
PspPI	GGNCC	4 cut(s)	9, 70, 220, 544
PstI	CTGCAG	2 cut(s)	570, 614
PsuI	RGATCY	3 cut(s)	142, 712, 790
PsyI	GACNNNGTC	1 cut(s)	487
RsaI	GTAC	2 cut(s)	43, 894
RsaNI	GTAC	2 cut(s)	42, 893
RseI	CAYNNNNRTG	3 cut(s)	31, 215, 432
SatI	GCNGC	4 cut(s)	566, 569, 624, 881
Sau3AI	GATC	7 cut(s)	142, 162, 381, 712, 790, 838, 855
Sau96I	GGNCC	4 cut(s)	9, 70, 220, 544
SchI	GAGTC	3 cut(s)	261, 384, 758
ScrFI	CCNGG	2 cut(s)	74, 548
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	2 cut(s)	202, 822
SfcI	CTRYAG	2 cut(s)	566, 610
SinI	GGWCC	2 cut(s)	220, 544
SmiMI	CAYNNNNRTG	3 cut(s)	31, 215, 432
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
SnaBI	TACGTA	1 cut(s)	239
Sse9I	AATT	1 cut(s)	757
SseBI	AGGCCT	1 cut(s)	733
SsiI	CCGC	2 cut(s)	266, 623
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	2 cut(s)	45, 486
StuI	AGGCCT	1 cut(s)	733
StyD4I	CCNGG	2 cut(s)	72, 546
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	3 cut(s)	85, 451, 799
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	165, 498
TasI	AATT	1 cut(s)	757
TatI	WGTACW	1 cut(s)	892
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	3 cut(s)	456, 891, 917
TseFI	GTSAC	3 cut(s)	425, 804, 819
TseI	GCWGC	3 cut(s)	565, 568, 880
Tsp45I	GTSAC	3 cut(s)	425, 804, 819
TspDTI	ATGAA	2 cut(s)	199, 920
TspGWI	ACGGA	2 cut(s)	838, 912
TspRI	CASTG	3 cut(s)	456, 891, 917
Tth111I	GACNNNGTC	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	220, 544
XceI	RCATGY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	666
XspI	CTAG	2 cut(s)	45, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.