Rh7CG100300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
N/A
Physical Location & Seq
Forward (+)
7507163 .. 7507555
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG100300.1

Sequence Viewer

Length: 393 bp
ATGGGGATGGGACTAGATGCTGTGAGAGATTATAGCAATCGGAATTGCACATTCAACCAACTGAGAGTTATGAAAGTAAACAGCTTTCCTTGTGTCAAAGCTGAAGCAGGTTTCATCAGATATCTCTTTCAAGTTCACCTATGCTCAAGAGTCAAGACAATGACTCTTCAACCTGCTTCTGCCGAGGTTTATTCGGAAGTACTTATGTTGGTGACGGAATTCAAGCGCTATTTGGGGCATGCTGAGTTAAAGTTCTCGAACACATTAAGTCCTTTGAGGGAGTCTTATAATGACTCCTATAATGAATTCCCTGATGACCTCTACTCCGATGACTCCTTCGCTCCTTCTCTGATGACTCCCTTGATGATTTCATCTTTGATCGATGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

130

Amino Acids

14.89

Weight (kDa)

4.96

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
Acc36I ACCTGC 2 cut(s) 98, 181
AcsI RAATTY 2 cut(s) 218, 305
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 201
AfeI AGCGCT 1 cut(s) 227
AgsI TTSAA 4 cut(s) 55, 131, 170, 223
AluBI AGCT 2 cut(s) 84, 101
AluI AGCT 2 cut(s) 84, 101
Aor51HI AGCGCT 1 cut(s) 227
ApoI RAATTY 2 cut(s) 218, 305
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 128, 223
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 229
BfuAI ACCTGC 2 cut(s) 98, 181
BmcAI AGTACT 1 cut(s) 201
BmsI GCATC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 130
Bsa29I ATCGAT 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 53, 234
BshVI ATCGAT 1 cut(s) 381
BslFI GGGAC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 54, 235
BspDI ATCGAT 1 cut(s) 381
BspMI ACCTGC 2 cut(s) 98, 181
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 378
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 62, 243
BstF5I GGATG 1 cut(s) 12
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 1 cut(s) 381
BstMBI GATC 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 381
BsuTUI ATCGAT 1 cut(s) 381
BtsCI GGATG 1 cut(s) 12
BveI ACCTGC 2 cut(s) 98, 181
Cac8I GCNNGC 1 cut(s) 240
CfoI GCGC 1 cut(s) 228
ClaI ATCGAT 1 cut(s) 381
Csp6I GTAC 1 cut(s) 200
CviAII CATG 1 cut(s) 239
CviJI RGCY 2 cut(s) 84, 101
CviKI_1 RGCY 2 cut(s) 84, 101
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 2 cut(s) 62, 243
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 122
Eco47III AGCGCT 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 123
EcoRI GAATTC 2 cut(s) 218, 305
EcoRV GATATC 1 cut(s) 122
FaeI CATG 1 cut(s) 242
FaiI YATR 7 cut(s) 33, 71, 142, 206, 240, 288, 300
FaqI GGGAC 1 cut(s) 24
FatI CATG 1 cut(s) 238
FokI GGATG 1 cut(s) 19
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 229
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 242
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 6 cut(s) 150, 163, 281, 293, 332, 355
HphI GGTGA 2 cut(s) 128, 223
Hpy166II GTNNAC 2 cut(s) 79, 136
Hpy188I TCNGA 5 cut(s) 42, 119, 196, 328, 351
Hpy188III TCNNGA 3 cut(s) 147, 154, 256
Hpy8I GTNNAC 2 cut(s) 79, 136
HpyAV CCTTC 2 cut(s) 346, 354
HpyCH4V TGCA 1 cut(s) 48
HpyF3I CTNAG 2 cut(s) 62, 243
Hsp92II CATG 1 cut(s) 242
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 378
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 3 cut(s) 93, 186, 324
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MboII GAAGA 1 cut(s) 158
MluCI AATT 3 cut(s) 43, 218, 305
MlyI GAGTC 6 cut(s) 157, 159, 287, 290, 326, 349
MnlI CCTC 4 cut(s) 178, 270, 329, 379
MseI TTAA 2 cut(s) 248, 266
NdeII GATC 1 cut(s) 378
NlaIII CATG 1 cut(s) 242
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 242
PaeI GCATGC 1 cut(s) 242
PleI GAGTC 6 cut(s) 157, 158, 287, 289, 326, 349
PpsI GAGTC 6 cut(s) 157, 158, 287, 289, 326, 349
PsiI TTATAA 1 cut(s) 288
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 2 cut(s) 248, 266
Sau3AI GATC 1 cut(s) 378
ScaI AGTACT 1 cut(s) 201
SchI GAGTC 6 cut(s) 157, 159, 287, 290, 326, 349
SetI ASST 7 cut(s) 86, 103, 112, 141, 175, 189, 321
SfaNI GCATC 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SphI GCATGC 1 cut(s) 242
Sse9I AATT 3 cut(s) 43, 218, 305
SspMI CTAG 1 cut(s) 14
TaqI TCGA 2 cut(s) 257, 381
TasI AATT 3 cut(s) 43, 218, 305
TatI WGTACW 1 cut(s) 199
Tru1I TTAA 2 cut(s) 248, 266
Tru9I TTAA 2 cut(s) 248, 266
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 4 cut(s) 86, 103, 318, 360
TspGWI ACGGA 1 cut(s) 230
XapI RAATTY 2 cut(s) 218, 305
XceI RCATGY 1 cut(s) 242
XspI CTAG 1 cut(s) 14
ZrmI AGTACT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.