Rh7CG100400

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
N/A
Physical Location & Seq
Forward (+)
7524355 .. 7525229
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG100400.1

Sequence Viewer

Length: 690 bp
ATGTTGAAGAGCCTTCATATTCGAAGAGTTACCGTGACCCGAGACGTGTTAGAAGAAGTGATTTCTCACAGTCCTCTGCTTGAGAAAATAATTTTGTGCAAACTTGGTATCAGACATCTCAAGATTGATGCACCAAATGTCAGTTTTCTTGAACTTCGAGGTGGTTTTGAGGATGTTGAACTTGAGAATACCATAAATCTTGTTGAAGTTTCAATTGACCAAAAACGGGGTTCTACCAATTCTAGCTCATCGTATCAAAAAAAAAAAAAAAATTCTAGCTCATTGCTCAAATTTTTCTTTAAGCTTCCTCGCATCGAGAGGCTCACACTCCAGGATAGCTTTTTAGAGGGTGCTAATGGTTCCTTGCCGAAGAAGTTGCCTGAACCATGTCTATGCCTGAACTTTCTTTCTATAAGCATACGCTTGAATAATCTGGAGGATATTTCGACTGCCATGTGCCTTCTGAGGAGCTCACCTGCTCTACAAGAATTAGAAATTTCGGTTCAACAAGACCAACATGTGGCTGATGCCGCAGAAGTAACCGCTTGGTTAAATGACAAGCAGAATCGGCCATTCACTCAACTGCGAGTTTTGAAAGTAACTGGCTTCTCATGTGTCAAAGCCGAAATGGACTTCATCGTATTTCTGCTTTTAAGCTCCCCTGCTCTTCAACAACTAGAAATTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

229

Amino Acids

25.82

Weight (kDa)

7.64

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 2 - 227 8.5e-11 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 2 - 166 7e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 484
Acc36I ACCTGC 1 cut(s) 484
AccB7I CCANNNNNTGG 1 cut(s) 520
AciI CCGC 2 cut(s) 531, 543
AcoI YGGCCR 1 cut(s) 569
AcsI RAATTY 4 cut(s) 271, 290, 495, 681
AfiI CCNNNNNNNGG 2 cut(s) 226, 520
AflIII ACRYGT 2 cut(s) 45, 517
AgsI TTSAA 9 cut(s) 7, 152, 179, 206, 213, 427, 506, 595, 671
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 6 cut(s) 246, 279, 304, 339, 471, 657
AluI AGCT 6 cut(s) 246, 279, 304, 339, 471, 657
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 1 cut(s) 569
ApoI RAATTY 4 cut(s) 271, 290, 495, 681
AsuHPI GGTGA 1 cut(s) 465
AsuII TTCGAA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 39
BanII GRGCYC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 473
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 3 cut(s) 243, 276, 677
BfuAI ACCTGC 1 cut(s) 484
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
Bme1390I CCNGG 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 39
BmgBI CACGTC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 3 cut(s) 118, 321, 517
BpmI CTGGAG 2 cut(s) 314, 455
Bpu14I TTCGAA 1 cut(s) 22
BpuEI CTTGAG 3 cut(s) 101, 104, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 520
Bse1I ACTGG 1 cut(s) 607
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 226, 520
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 1 cut(s) 481
BshFI GGCC 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 473
BsiHKCI CYCGRG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 226, 520
BsmAI GTCTC 1 cut(s) 36
BsmBI CGTCTC 1 cut(s) 36
BsnI GGCC 1 cut(s) 571
BsoBI CYCGRG 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 473
BspACI CCGC 2 cut(s) 531, 543
BspANI GGCC 1 cut(s) 571
BspCNI CTCAG 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 484
BspQI GCTCTTC 2 cut(s) 2, 672
BspT104I TTCGAA 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 281
BsrI ACTGG 1 cut(s) 607
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 34, 71
Bst6I CTCTTC 3 cut(s) 2, 19, 672
BstBI TTCGAA 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 464
BstF5I GGATG 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 530, 568
BstNI CCWGG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 571
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 484
CviAII CATG 4 cut(s) 387, 454, 518, 612
DdeI CTNAG 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 569
Eam1104I CTCTTC 3 cut(s) 2, 19, 672
EarI CTCTTC 3 cut(s) 2, 19, 672
Ecl136II GAGCTC 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 473
Eco53kI GAGCTC 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 471
EcoRII CCWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 4 cut(s) 390, 457, 521, 615
FaiI YATR 9 cut(s) 18, 194, 388, 394, 413, 419, 455, 519, 613
FatI CATG 4 cut(s) 386, 453, 517, 611
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 3 cut(s) 243, 276, 677
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 2 cut(s) 314, 455
HaeIII GGCC 1 cut(s) 571
Hin1II CATG 4 cut(s) 390, 457, 521, 615
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 565
HphI GGTGA 1 cut(s) 465
Hpy188I TCNGA 2 cut(s) 113, 465
Hpy188III TCNNGA 5 cut(s) 121, 149, 316, 434, 687
HpyAV CCTTC 2 cut(s) 23, 470
HpyCH4III ACNGT 2 cut(s) 34, 71
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 99, 131
HpyF10VI GCNNNNNNNGC 2 cut(s) 530, 568
HpyF3I CTNAG 1 cut(s) 464
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 4 cut(s) 390, 457, 521, 615
LguI GCTCTTC 2 cut(s) 2, 672
LmnI GCTCC 2 cut(s) 468, 662
LpnPI CCDG 8 cut(s) 317, 344, 393, 410, 419, 489, 588, 675
LweI GCATC 3 cut(s) 118, 321, 517
MaeI CTAG 3 cut(s) 243, 276, 677
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 4 cut(s) 28, 34, 538, 598
MboII GAAGA 5 cut(s) 19, 36, 65, 382, 659
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 8 cut(s) 90, 213, 238, 271, 290, 488, 495, 681
MnlI CCTC 8 cut(s) 84, 152, 163, 312, 318, 340, 430, 459
MseI TTAA 3 cut(s) 300, 551, 653
MslI CAYNNNNRTG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 332
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 530, 568
NlaIII CATG 4 cut(s) 390, 457, 521, 615
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 521
NspV TTCGAA 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 484
PciI ACATGT 1 cut(s) 517
PciSI GCTCTTC 2 cut(s) 2, 672
PfeI GAWTC 1 cut(s) 565
PflMI CCANNNNNTGG 1 cut(s) 520
PfoI TCCNGGA 1 cut(s) 330
PkrI GCNGC 1 cut(s) 532
PscI ACATGT 1 cut(s) 517
Psp124BI GAGCTC 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 391
SacI GAGCTC 1 cut(s) 473
SapI GCTCTTC 2 cut(s) 2, 672
SaqAI TTAA 3 cut(s) 300, 551, 653
SatI GCNGC 1 cut(s) 531
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 473
SetI ASST 9 cut(s) 48, 163, 248, 281, 306, 341, 473, 478, 659
SfaNI GCATC 3 cut(s) 118, 321, 517
SfuI TTCGAA 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 391
SmlI CTYRAG 3 cut(s) 80, 119, 182
SmoI CTYRAG 3 cut(s) 80, 119, 182
Sse9I AATT 8 cut(s) 90, 213, 238, 271, 290, 488, 495, 681
SsiI CCGC 2 cut(s) 531, 543
SspMI CTAG 3 cut(s) 243, 276, 677
SstI GAGCTC 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 34, 71
TaiI ACGT 1 cut(s) 48
TaqI TCGA 4 cut(s) 22, 157, 315, 446
TasI AATT 8 cut(s) 90, 213, 238, 271, 290, 488, 495, 681
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 3 cut(s) 300, 551, 653
Tru9I TTAA 3 cut(s) 300, 551, 653
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 5, 625
Van91I CCANNNNNTGG 1 cut(s) 520
XapI RAATTY 4 cut(s) 271, 290, 495, 681
XceI RCATGY 1 cut(s) 521
XspI CTAG 3 cut(s) 243, 276, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.