Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13361273 .. 13361691

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG161900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCACCACCTCACCGGCCACCGCAACATCGTCGAGCTCAAAGGCGCGTACGAGGACCGCCACTCGGTCAACCTGGTCATGGAGCTCTGCGCCGGCGGCGAGCTTTTCGATAGGATCATCGCCAAGGGCCACTATTCGGAGCGGGCGGCGGCGAATCTCTGCCGTCAGATGGTTGAGCTGAAGTTGACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

64

Amino Acids

7.25

Weight (kDa)

6.96

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 59	6.8e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	1 cut(s)	47
AciI	CCGC	6 cut(s)	22, 58, 96, 142, 146, 149
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	16
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	4 cut(s)	64, 79, 136, 169
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	37, 85, 103, 178
AluI	AGCT	4 cut(s)	37, 85, 103, 178
Alw21I	GWGCWC	2 cut(s)	39, 87
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	2 cut(s)	16, 127
AspLEI	GCGC	2 cut(s)	47, 92
AspS9I	GGNCC	2 cut(s)	55, 127
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	39, 87
Bbv12I	GWGCWC	2 cut(s)	39, 87
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	147
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	97, 147, 150
BlsI	GCNGC	3 cut(s)	98, 148, 151
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 127
BmrFI	CCNGG	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 79, 136, 169
Bse118I	RCCGGY	2 cut(s)	14, 92
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	4 cut(s)	64, 79, 136, 169
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	18, 129
BsiHKAI	GWGCWC	2 cut(s)	39, 87
BsiSI	CCGG	2 cut(s)	15, 93
BsiWI	CGTACG	1 cut(s)	48
BslI	CCNNNNNNNGG	4 cut(s)	64, 79, 136, 169
BsnI	GGCC	2 cut(s)	18, 129
Bsp1286I	GDGCHC	2 cut(s)	39, 87
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	6 cut(s)	22, 58, 96, 142, 146, 149
BspANI	GGCC	2 cut(s)	18, 129
BspFNI	CGCG	1 cut(s)	47
BspPI	GGATC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	142
BsrFI	RCCGGY	2 cut(s)	14, 92
BssAI	RCCGGY	2 cut(s)	14, 92
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	94, 101, 144
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	47, 92
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	18, 129
BtgZI	GCGATG	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	94, 101, 144
CfoI	GCGC	2 cut(s)	47, 92
Cfr10I	RCCGGY	2 cut(s)	14, 92
Cfr13I	GGNCC	2 cut(s)	55, 127
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	6 cut(s)	18, 37, 85, 103, 129, 178
CviKI_1	RGCY	6 cut(s)	18, 37, 85, 103, 129, 178
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	16
Ecl136II	GAGCTC	2 cut(s)	37, 85
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	39, 87
Eco47I	GGWCC	1 cut(s)	55
Eco53kI	GAGCTC	2 cut(s)	37, 85
EcoICRI	GAGCTC	2 cut(s)	37, 85
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	2 cut(s)	39, 87
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	82
FaiI	YATR	1 cut(s)	80
FatI	CATG	1 cut(s)	78
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	97, 147, 150
FriOI	GRGCYC	2 cut(s)	39, 87
Fsp4HI	GCNGC	3 cut(s)	97, 147, 150
GlaI	GCGC	2 cut(s)	46, 91
GluI	GCNGC	3 cut(s)	97, 147, 150
HaeIII	GGCC	2 cut(s)	18, 129
HapII	CCGG	2 cut(s)	15, 93
HhaI	GCGC	2 cut(s)	47, 92
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	2 cut(s)	45, 90
HinP1I	GCGC	2 cut(s)	45, 90
HincII	GTYRAC	2 cut(s)	70, 186
HindII	GTYRAC	2 cut(s)	70, 186
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	15, 93
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	70, 186
Hpy188I	TCNGA	2 cut(s)	139, 168
Hpy8I	GTNNAC	2 cut(s)	70, 186
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	2 cut(s)	45, 90
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	2 cut(s)	82, 139
LpnPI	CCDG	4 cut(s)	28, 59, 86, 106
MabI	ACCWGGT	1 cut(s)	72
MalI	GATC	1 cut(s)	116
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	1 cut(s)	114
MhlI	GDGCHC	2 cut(s)	39, 87
MnlI	CCTC	2 cut(s)	20, 46
MreI	CGCCGGCG	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	1 cut(s)	193
MspI	CCGG	2 cut(s)	15, 93
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	96
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	82
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	154
Pfl23II	CGTACG	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	98, 148, 151
Psp124BI	GAGCTC	2 cut(s)	39, 87
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspLI	CGTACG	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	55, 127
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	2 cut(s)	39, 87
SaqAI	TTAA	1 cut(s)	193
SatI	GCNGC	3 cut(s)	97, 147, 150
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	2 cut(s)	55, 127
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	2 cut(s)	39, 87
SetI	ASST	6 cut(s)	12, 39, 75, 87, 105, 180
SexAI	ACCWGGT	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	55
SsiI	CCGC	6 cut(s)	22, 58, 96, 142, 146, 149
SstI	GAGCTC	2 cut(s)	39, 87
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	2 cut(s)	33, 108
TaqII	GACCGA	1 cut(s)	55
TauI	GCSGC	3 cut(s)	99, 149, 152
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	193
Tru9I	TTAA	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.