Rh7CG189400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
N/A
Physical Location & Seq
Reverse (-)
16711547 .. 16713028
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG189400.1

Sequence Viewer

Length: 420 bp
ATGCAGGCTCGGAAACATGATCCAGCGGTGGGAAAATCGAAGTCGTTGTTAGATGACTTCCAGAACTGCTCATTCACCCAACTGCGAGTTGTGAAATTAACCGGCATTTCAGTCTACTCAAGAAAAATCACAGAGATCCAAGCTACTACAGTAACAATTGAGCTAAATCCCAAGCTCAGAGCCACAATCTCTCATAAAAATCCAAATGAGTGTCACTGTCAGAAATCGTACCTTCTCGACCGCGTGGAGAGCAGCGCCACGGCCGCCAGCGCCGATGATGAGCAAGTCTTAGTCGAACGACTTAGGAGCGCTTCCATTACCAGACAAGGCCCCCGAAACCTTCTTGGACAGCGATGCCGCCGCAAGCCGGACGCAGTGCGAGTCAGACTGGCTGAGAGACGAGAACTCGAAGGCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

139

Amino Acids

15.68

Weight (kDa)

9.83

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 243
AciI CCGC 5 cut(s) 26, 241, 264, 358, 361
AclWI GGATC 2 cut(s) 14, 130
AcoI YGGCCR 1 cut(s) 261
AfaI GTAC 1 cut(s) 230
AfeI AGCGCT 1 cut(s) 310
AfiI CCNNNNNNNGG 2 cut(s) 29, 367
AluBI AGCT 3 cut(s) 143, 163, 175
AluI AGCT 3 cut(s) 143, 163, 175
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 2 cut(s) 14, 130
Aor51HI AGCGCT 1 cut(s) 310
AoxI GGCC 3 cut(s) 261, 328, 412
ApeKI GCWGC 1 cut(s) 252
AspLEI GCGC 3 cut(s) 257, 272, 311
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 67
BbvI GCAGC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 391
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 3 cut(s) 258, 273, 312
BisI GCNGC 4 cut(s) 253, 264, 358, 361
BlsI GCNGC 4 cut(s) 254, 265, 359, 362
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 367
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 29, 367
BseMII CTCAG 2 cut(s) 190, 384
BseNI ACTGG 1 cut(s) 393
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 243
Bsh1285I CGRYCG 2 cut(s) 241, 264
BshFI GGCC 3 cut(s) 263, 330, 414
BsiEI CGRYCG 2 cut(s) 241, 264
BsiSI CCGG 2 cut(s) 102, 368
BslI CCNNNNNNNGG 2 cut(s) 29, 367
BsmAI GTCTC 1 cut(s) 391
BsmBI CGTCTC 1 cut(s) 391
BsnI GGCC 3 cut(s) 263, 330, 414
Bsp143I GATC 2 cut(s) 19, 135
BspACI CCGC 5 cut(s) 26, 241, 264, 358, 361
BspANI GGCC 3 cut(s) 263, 330, 414
BspCNI CTCAG 2 cut(s) 189, 385
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 331
BspPI GGATC 2 cut(s) 14, 130
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 393
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 19, 135
Bst4CI ACNGT 2 cut(s) 151, 218
BstC8I GCNNGC 3 cut(s) 6, 268, 365
BstDEI CTNAG 4 cut(s) 176, 289, 302, 393
BstDSI CCRYGG 1 cut(s) 258
BstFNI CGCG 1 cut(s) 243
BstH2I RGCGCY 3 cut(s) 258, 273, 312
BstHHI GCGC 3 cut(s) 257, 272, 311
BstKTI GATC 2 cut(s) 22, 138
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 2 cut(s) 19, 135
BstMCI CGRYCG 2 cut(s) 241, 264
BstMWI GCNNNNNNNGC 3 cut(s) 249, 263, 269
BstSFI CTRYAG 1 cut(s) 147
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BstZI CGGCCG 1 cut(s) 261
BsuRI GGCC 3 cut(s) 263, 330, 414
BtgI CCRYGG 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 214, 381
Cac8I GCNNGC 3 cut(s) 6, 268, 365
CfoI GCGC 3 cut(s) 257, 272, 311
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 329
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 229
CviAII CATG 1 cut(s) 17
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 4 cut(s) 176, 289, 302, 393
DpnI GATC 2 cut(s) 21, 137
DpnII GATC 2 cut(s) 19, 135
EaeI YGGCCR 1 cut(s) 261
EagI CGGCCG 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 261
Eco147I AGGCCT 1 cut(s) 414
Eco47III AGCGCT 1 cut(s) 310
Eco52I CGGCCG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 1 cut(s) 20
FaiI YATR 2 cut(s) 18, 195
FatI CATG 1 cut(s) 16
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 253, 264, 358, 361
Fsp4HI GCNGC 4 cut(s) 253, 264, 358, 361
GlaI GCGC 3 cut(s) 256, 271, 310
GluI GCNGC 4 cut(s) 253, 264, 358, 361
HaeII RGCGCY 3 cut(s) 258, 273, 312
HaeIII GGCC 3 cut(s) 263, 330, 414
HapII CCGG 2 cut(s) 102, 368
HgaI GACGC 1 cut(s) 380
HhaI GCGC 3 cut(s) 257, 272, 311
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 3 cut(s) 255, 270, 309
HinP1I GCGC 3 cut(s) 255, 270, 309
HinfI GANTC 1 cut(s) 381
HpaII CCGG 2 cut(s) 102, 368
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 4 cut(s) 12, 179, 222, 386
Hpy188III TCNNGA 3 cut(s) 61, 120, 236
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 3 cut(s) 242, 350, 404
HpyCH4III ACNGT 2 cut(s) 151, 218
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 249, 263, 269
HpyF3I CTNAG 4 cut(s) 176, 289, 302, 393
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 3 cut(s) 255, 270, 309
Kzo9I GATC 2 cut(s) 19, 135
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 7 cut(s) 36, 74, 115, 280, 334, 374, 381
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 1 cut(s) 344
MaeIII GTNAC 2 cut(s) 151, 212
MalI GATC 2 cut(s) 21, 137
MboI GATC 2 cut(s) 19, 135
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 135
MluCI AATT 2 cut(s) 95, 156
MlyI GAGTC 1 cut(s) 390
MseI TTAA 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 2 cut(s) 102, 368
MunI CAATTG 1 cut(s) 156
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 249, 263, 269
NdeII GATC 2 cut(s) 19, 135
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 212
PceI AGGCCT 1 cut(s) 414
PkrI GCNGC 4 cut(s) 254, 265, 359, 362
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 1 cut(s) 135
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 4 cut(s) 253, 264, 358, 361
Sau3AI GATC 2 cut(s) 19, 135
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 1 cut(s) 390
SetI ASST 5 cut(s) 145, 165, 177, 234, 342
SfaNI GCATC 1 cut(s) 344
SfcI CTRYAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 95, 156
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 5 cut(s) 26, 241, 264, 358, 361
StuI AGGCCT 1 cut(s) 414
TaaI ACNGT 2 cut(s) 151, 218
TaqI TCGA 4 cut(s) 38, 237, 294, 408
TasI AATT 2 cut(s) 95, 156
TauI GCSGC 3 cut(s) 266, 360, 363
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 2 cut(s) 221, 381
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 212
TspRI CASTG 2 cut(s) 221, 381
XmiI GTMKAC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.