Rh7CG189500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
N/A
Physical Location & Seq
Reverse (-)
16713233 .. 16713674
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG189500.1

Sequence Viewer

Length: 339 bp
ATGGATTATGCGATTAATTTCATATTTACATTTTTCTGGTCGATACATGGATCATCTATATTTACATGGCCTTTTTGCTCCAGTGCTGTTGACTCCTTGCAAGAGGAGCTGCCGAAACCATATCTTTGTTTGAAGTCTCTTTGTTTGAGCATACGCTTGACTAATTTGGAGGAGATTTTAGCAGCTATACGCCTTCTAAGAAGTTCACCTGCCCTACAAGATCTAGAACTTTCGGTTCGCCAAGGAGATGGGGCTGTGTTTGCTCCTGGAGGAACAACCTATTGGTTAAATGACAACCAGAACTGGGACGAATTCAGCCAACTGAAGACCCTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

112

Amino Acids

12.75

Weight (kDa)

4.75

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 265, 297
AluBI AGCT 2 cut(s) 109, 185
AluI AGCT 2 cut(s) 109, 185
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 58
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 109, 182
ApoI RAATTY 1 cut(s) 311
AseI ATTAAT 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 96, 194
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 217
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 110, 183
BlsI GCNGC 2 cut(s) 111, 184
Bme1390I CCNGG 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 64, 288
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 81, 308
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 304
BseNI ACTGG 2 cut(s) 81, 308
BseRI GAGGAG 2 cut(s) 119, 185
BseXI GCAGC 2 cut(s) 96, 194
BshFI GGCC 1 cut(s) 70
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 50, 220
BspANI GGCC 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 1 cut(s) 58
BsrI ACTGG 2 cut(s) 81, 308
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 50, 220
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 197
BstKTI GATC 2 cut(s) 53, 223
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 50, 220
BstMWI GCNNNNNNNGC 2 cut(s) 106, 260
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 96, 194
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 217
CviAII CATG 2 cut(s) 47, 66
CviJI RGCY 5 cut(s) 70, 109, 185, 254, 318
CviKI_1 RGCY 5 cut(s) 70, 109, 185, 254, 318
DdeI CTNAG 1 cut(s) 197
DpnI GATC 2 cut(s) 52, 222
DpnII GATC 2 cut(s) 50, 220
Eco130I CCWWGG 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 50, 69
FaiI YATR 8 cut(s) 9, 23, 48, 59, 67, 121, 152, 188
FaqI GGGAC 1 cut(s) 320
FatI CATG 2 cut(s) 46, 65
Fnu4HI GCNGC 2 cut(s) 110, 183
Fsp4HI GCNGC 2 cut(s) 110, 183
FspBI CTAG 1 cut(s) 224
GluI GCNGC 2 cut(s) 110, 183
GsuI CTGGAG 2 cut(s) 64, 288
HaeIII GGCC 1 cut(s) 70
Hin1II CATG 2 cut(s) 50, 69
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 92
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 2 cut(s) 91, 206
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 2 cut(s) 91, 206
HpyAV CCTTC 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 260
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 2 cut(s) 50, 69
Kzo9I GATC 2 cut(s) 50, 220
LmnI GCTCC 3 cut(s) 83, 106, 268
LpnPI CCDG 7 cut(s) 22, 94, 222, 252, 279, 289, 311
Lsp1109I GCAGC 2 cut(s) 96, 194
MaeI CTAG 1 cut(s) 224
MalI GATC 2 cut(s) 52, 222
MboI GATC 2 cut(s) 50, 220
MboII GAAGA 1 cut(s) 337
MflI RGATCY 1 cut(s) 220
MluCI AATT 3 cut(s) 16, 163, 311
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 3 cut(s) 97, 163, 263
MseI TTAA 2 cut(s) 15, 287
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 106, 260
NdeII GATC 2 cut(s) 50, 220
NlaIII CATG 2 cut(s) 50, 69
PaqCI CACCTGC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 2 cut(s) 111, 184
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PshBI ATTAAT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PsuI RGATCY 1 cut(s) 220
SaqAI TTAA 2 cut(s) 15, 287
SatI GCNGC 2 cut(s) 110, 183
Sau3AI GATC 2 cut(s) 50, 220
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 267
SetI ASST 4 cut(s) 111, 187, 211, 281
Sse9I AATT 3 cut(s) 16, 163, 311
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 241
TaqI TCGA 1 cut(s) 41
TasI AATT 3 cut(s) 16, 163, 311
Tru1I TTAA 2 cut(s) 15, 287
Tru9I TTAA 2 cut(s) 15, 287
TscAI CASTG 1 cut(s) 88
TseI GCWGC 2 cut(s) 109, 182
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 1 cut(s) 88
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 1 cut(s) 311
XbaI TCTAGA 1 cut(s) 223
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.