Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

29092424 .. 29092930

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG286300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATGACAACCAGCTAAGAAAGAGGATTAAAAAGTTGCTGCAGAATAGTAGGTACCTGATTGTTCTGGATGATATATGGCATATACCCGGCTGGGAGGCCATCAATCATGCAATGCCAAACAACAATCGTGGTAGTCGAGTAATGCTCACTACTCGCAATGTTAATGTAGCCTCTGCCTCTTGCTTGGGGAACCACGACATGTTCTACCGTTTAGAGCCCTTATCTCCAGAAGATTCATGGACTCTGTTCTGCAGGAAGACATTTCAAGGCAACTCATGCCTTCCCAATTTGGAGGAAATTTGTCGATCCATCCTGATGAAATGCGGGGGACTGCCCCTTGCAACTGTGGCCATCAGCGCTGTACTAGCTTTAAAGGACCTGAGAAATGTGGATAATTGGGCTGCTGTCTCTGGCAGTATTGGAACTGAAATAGAAGGAAATGATCAACTTGACAACATAAAAAATTGCTGCATCTCAGTTACAGTGATTTACCATACCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

168

Amino Acids

18.86

Weight (kDa)

6.88

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	2 - 93	2.8e-22	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	300
AfaI	GTAC	2 cut(s)	56, 366
AfeI	AGCGCT	1 cut(s)	361
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	2 cut(s)	16, 371
AluI	AGCT	2 cut(s)	16, 371
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	303
Aor51HI	AGCGCT	1 cut(s)	361
AoxI	GGCC	2 cut(s)	99, 351
ApeKI	GCWGC	3 cut(s)	40, 404, 471
ApoI	RAATTY	1 cut(s)	300
Asp718I	GGTACC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	379
AsuC2I	CCSGG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	27, 391, 458
BccI	CCATC	3 cut(s)	110, 320, 362
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	2 cut(s)	41, 253
BfoI	RGCGCY	1 cut(s)	363
BisI	GCNGC	3 cut(s)	41, 405, 472
BlsI	GCNGC	3 cut(s)	42, 406, 473
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	56, 194
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	266
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	90
Bse3DI	GCAATG	2 cut(s)	120, 166
BseGI	GGATG	3 cut(s)	10, 76, 312
BseMI	GCAATG	2 cut(s)	120, 166
BseMII	CTCAG	2 cut(s)	374, 492
BseXI	GCAGC	3 cut(s)	27, 391, 458
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	2 cut(s)	101, 353
BshNI	GGYRCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	101, 353
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	308, 445
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	2 cut(s)	101, 353
BspCNI	CTCAG	2 cut(s)	375, 491
BspLI	GGNNCC	2 cut(s)	56, 194
BspMAI	CTGCAG	2 cut(s)	45, 257
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	120, 166
BssMI	GATC	2 cut(s)	308, 445
Bst4CI	ACNGT	3 cut(s)	212, 349, 487
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	17, 383, 478
BstF5I	GGATG	3 cut(s)	10, 76, 312
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	2 cut(s)	311, 448
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	2 cut(s)	308, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	279, 350, 359, 368
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	2 cut(s)	41, 253
BstV1I	GCAGC	3 cut(s)	27, 391, 458
BstV2I	GAAGAC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	101, 353
BtsCI	GGATG	3 cut(s)	10, 76, 312
BtsIMutI	CAGTG	1 cut(s)	492
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	55, 365
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	4 cut(s)	110, 202, 240, 279
CviJI	RGCY	8 cut(s)	16, 93, 101, 173, 220, 353, 371, 404
CviKI_1	RGCY	8 cut(s)	16, 93, 101, 173, 220, 353, 371, 404
CviQI	GTAC	2 cut(s)	55, 365
DdeI	CTNAG	3 cut(s)	17, 383, 478
DpnI	GATC	2 cut(s)	310, 447
DpnII	GATC	2 cut(s)	308, 445
DraI	TTTAAA	1 cut(s)	375
EaeI	YGGCCR	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	379
Eco47III	AGCGCT	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	4 cut(s)	113, 205, 243, 282
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	4 cut(s)	109, 201, 239, 278
FauI	CCCGC	1 cut(s)	320
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	41, 405, 472
FokI	GGATG	3 cut(s)	17, 83, 299
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	41, 405, 472
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	3 cut(s)	41, 405, 472
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	101, 353
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	113, 205, 243, 282
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	236, 244
HpaII	CCGG	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	506
Hpy188III	TCNNGA	3 cut(s)	68, 230, 316
HpyAV	CCTTC	2 cut(s)	293, 431
HpyCH4III	ACNGT	3 cut(s)	212, 349, 487
HpyCH4V	TGCA	5 cut(s)	43, 113, 255, 344, 474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	279, 350, 359, 368
HpyF3I	CTNAG	3 cut(s)	17, 383, 478
Hsp92II	CATG	4 cut(s)	113, 205, 243, 282
HspAI	GCGC	1 cut(s)	360
KpnI	GGTACC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	308, 445
Lsp1109I	GCAGC	3 cut(s)	27, 391, 458
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	310, 447
MboI	GATC	2 cut(s)	308, 445
MboII	GAAGA	2 cut(s)	245, 271
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	4 cut(s)	289, 300, 397, 466
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	5 cut(s)	18, 91, 184, 190, 289
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	3 cut(s)	30, 165, 374
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	4 cut(s)	279, 350, 359, 368
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	308, 445
NlaIII	CATG	4 cut(s)	113, 205, 243, 282
NlaIV	GGNNCC	2 cut(s)	56, 194
NspI	RCATGY	1 cut(s)	205
PciI	ACATGT	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	42, 406, 473
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	379
PscI	ACATGT	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	56, 194
PspPI	GGNCC	1 cut(s)	379
PspPPI	RGGWCCY	1 cut(s)	379
PstI	CTGCAG	2 cut(s)	45, 257
RsaI	GTAC	2 cut(s)	56, 366
RsaNI	GTAC	2 cut(s)	55, 365
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	30, 165, 374
SatI	GCNGC	3 cut(s)	41, 405, 472
Sau3AI	GATC	2 cut(s)	308, 445
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	5 cut(s)	18, 56, 60, 373, 384
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	2 cut(s)	41, 253
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	4 cut(s)	289, 300, 397, 466
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	212, 349, 487
TaqI	TCGA	2 cut(s)	139, 307
TasI	AATT	4 cut(s)	289, 300, 397, 466
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	3 cut(s)	30, 165, 374
Tru9I	TTAA	3 cut(s)	30, 165, 374
TscAI	CASTG	1 cut(s)	492
TseI	GCWGC	3 cut(s)	40, 404, 471
TspDTI	ATGAA	2 cut(s)	228, 335
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	300
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.