Rh7CG507800

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
N/A
Physical Location & Seq
Reverse (-)
68637431 .. 68639210
1780 bp
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UTR
Exon/CDS
Intron
Rh7CG507800.1

Sequence Viewer

Length: 351 bp
ATGCCTCAAATCGAATCGAATCGAAGAGTTCTGGGTTTGAAGCTTTTAATCGAATCGAACTTCAAGCCTTCAAGGCCTCGAATGAAATCGAAGAGTTCTGGGTTTGAATCGAATCGAGAGGCGGAGAGGGTAAGTGGCAGAGAAATGGACAGAAGTGAAATTATTGAAGCAGAGGACAATCTCACATTGCAGATACCTTCCCCTCAGTCAATTGTTGCCATTGCTATCAATGGCAACAGAAAACGAAAATACACTGAAGTAGGCACTGGAGAAGTGCAAGTTGATGTTGTAGTCATTGAGTCAAATAATGTGGCAAATGCAATAGCAGAGGAGTTTCTAGGCCTGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

12.91

Weight (kDa)

5.59

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 276
AgsI TTSAA 5 cut(s) 40, 64, 72, 107, 167
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AoxI GGCC 2 cut(s) 74, 340
BfaI CTAG 1 cut(s) 338
BglI GCCNNNNNGGC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 2 cut(s) 185, 219
BseMI GCAATG 2 cut(s) 185, 219
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 344
BshFI GGCC 2 cut(s) 76, 342
BsnI GGCC 2 cut(s) 76, 342
BspACI CCGC 1 cut(s) 122
BspANI GGCC 2 cut(s) 76, 342
BspCNI CTCAG 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 185, 219
BsrI ACTGG 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 19, 86
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 73
BsuRI GGCC 2 cut(s) 76, 342
BtsIMutI CAGTG 2 cut(s) 252, 264
Cac8I GCNNGC 1 cut(s) 344
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviJI RGCY 4 cut(s) 43, 67, 76, 342
CviKI_1 RGCY 4 cut(s) 43, 67, 76, 342
DdeI CTNAG 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 19, 86
EarI CTCTTC 2 cut(s) 19, 86
EciI GGCGGA 1 cut(s) 137
Eco147I AGGCCT 2 cut(s) 76, 342
Eco57I CTGAAG 1 cut(s) 276
FaiI YATR 1 cut(s) 349
FspBI CTAG 1 cut(s) 338
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 2 cut(s) 76, 342
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 6 cut(s) 14, 19, 53, 107, 112, 299
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 78, 207
HpyCH4V TGCA 3 cut(s) 190, 277, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 1 cut(s) 204
LpnPI CCDG 3 cut(s) 17, 84, 252
MaeI CTAG 1 cut(s) 338
MboII GAAGA 2 cut(s) 36, 103
MfeI CAATTG 1 cut(s) 210
MluCI AATT 2 cut(s) 159, 210
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 7 cut(s) 15, 87, 112, 120, 166, 213, 322
MseI TTAA 1 cut(s) 47
MunI CAATTG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 73
PceI AGGCCT 2 cut(s) 76, 342
PfeI GAWTC 5 cut(s) 14, 19, 53, 107, 112
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 47
SchI GAGTC 1 cut(s) 308
SetI ASST 2 cut(s) 45, 199
SgeI CNNG 8 cut(s) 44, 76, 84, 90, 111, 128, 279, 290
Sse9I AATT 2 cut(s) 159, 210
SseBI AGGCCT 2 cut(s) 76, 342
SsiI CCGC 1 cut(s) 122
SspMI CTAG 1 cut(s) 338
StuI AGGCCT 2 cut(s) 76, 342
TaqI TCGA 9 cut(s) 12, 17, 22, 51, 56, 79, 89, 110, 115
TasI AATT 2 cut(s) 159, 210
TfiI GAWTC 5 cut(s) 14, 19, 53, 107, 112
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 2 cut(s) 259, 271
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 2 cut(s) 259, 271
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.