Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16770740 .. 16771507

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG181200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAATAGCTCCAATTACCAGCTCTCAGACTCCAACCAGAAAAGCCTCGAATCAGTCTCCTCCATCGACAAGCCCGAGTCGTCTTCCTTATCTGACACAAGCGTCCCGACTCGCCGTTCACTTCATTCCGACGGAGCGGTGATACTTGCTTCGAGCTGGCCGAAGAAGCGAGCCGACCAGCTCGACATTCGCAGGGCCGCCGCCGAAGCTGCTGAGACATTTCGACCTGAGGAATTCGGCGGCGTCTCAAGCAGCTGCGACGACAACGAGATAGAACATGAGAATGAGAATGTTGAGATGGACAACGAGAAGAATGACGGCTTCTACGAGGAGAGGGAACACGAGAATGAGAAGAAGAACGACGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTAGCATGGCGGAGGGTCCACTGCTCTCTCCACCTCGTCATTCCTTGGACAGTATGAACTGGGCAGACTATCAGGTGGAAAGCGAGGCAAATTTCTGCTTGTGGAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

174

Amino Acids

19.71

Weight (kDa)

4.34

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	137
AciI	CCGC	5 cut(s)	137, 198, 201, 240, 422
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	2 cut(s)	233, 502
AcyI	GRCGYC	1 cut(s)	243
AluBI	AGCT	7 cut(s)	9, 22, 156, 181, 209, 255, 519
AluI	AGCT	7 cut(s)	9, 22, 156, 181, 209, 255, 519
Alw26I	GTCTC	3 cut(s)	61, 209, 250
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	158, 195
ApeKI	GCWGC	3 cut(s)	209, 252, 255
ApoI	RAATTY	2 cut(s)	233, 502
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	195, 428
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	228
BauI	CACGAG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	196, 242, 264
BccI	CCATC	2 cut(s)	71, 292
BceAI	ACGGC	3 cut(s)	99, 334, 379
BcoDI	GTCTC	3 cut(s)	61, 209, 250
BfaI	CTAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	389
BisI	GCNGC	6 cut(s)	198, 201, 210, 241, 253, 256
BlsI	GCNGC	6 cut(s)	199, 202, 211, 242, 254, 257
Bme18I	GGWCC	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	195, 428
BmiI	GGNNCC	1 cut(s)	429
BmrI	ACTGGG	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	476
Bse21I	CCTNAGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	3 cut(s)	39, 204, 219
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	2 cut(s)	49, 344
BseXI	GCAGC	3 cut(s)	196, 242, 264
BshFI	GGCC	2 cut(s)	160, 197
BsiHKCI	CYCGRG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	3 cut(s)	61, 209, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	160, 197
BsoBI	CYCGRG	1 cut(s)	74
BspACI	CCGC	5 cut(s)	137, 198, 201, 240, 422
BspANI	GGCC	2 cut(s)	160, 197
BspCNI	CTCAG	3 cut(s)	38, 205, 220
BspLI	GGNNCC	1 cut(s)	429
BspQI	GCTCTTC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	456
BssNI	GRCGYC	1 cut(s)	243
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	2 cut(s)	375, 395
BstACI	GRCGYC	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	158, 171
BstDEI	CTNAG	3 cut(s)	25, 213, 228
BstF5I	GGATG	1 cut(s)	382
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstMAI	GTCTC	3 cut(s)	61, 209, 250
BstMWI	GCNNNNNNNGC	6 cut(s)	166, 206, 209, 249, 406, 516
BstNSI	RCATGY	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	196, 242, 264
BstV2I	GAAGAC	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	160, 197
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	431
Cac8I	GCNNGC	2 cut(s)	158, 171
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	195, 428
CseI	GACGC	2 cut(s)	91, 232
CviAII	CATG	3 cut(s)	278, 397, 418
DdeI	CTNAG	3 cut(s)	25, 213, 228
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	2 cut(s)	375, 395
EarI	CTCTTC	2 cut(s)	375, 395
EciI	GGCGGA	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	428
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	3 cut(s)	281, 400, 421
FaiI	YATR	4 cut(s)	279, 398, 419, 467
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	277, 396, 417
Fnu4HI	GCNGC	6 cut(s)	198, 201, 210, 241, 253, 256
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	6 cut(s)	198, 201, 210, 241, 253, 256
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	6 cut(s)	198, 201, 210, 241, 253, 256
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	160, 197
HgaI	GACGC	2 cut(s)	91, 232
HhaI	GCGC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	281, 400, 421
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	4 cut(s)	29, 50, 77, 109
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	119, 431
Hpy188I	TCNGA	4 cut(s)	28, 94, 130, 524
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	119, 431
Hpy99I	CGWCG	3 cut(s)	134, 263, 365
HpyCH4III	ACNGT	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	166, 206, 209, 249, 406, 516
HpyF3I	CTNAG	3 cut(s)	25, 213, 228
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	281, 400, 421
HspAI	GCGC	1 cut(s)	386
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	3 cut(s)	14, 134, 516
LpnPI	CCDG	9 cut(s)	32, 50, 142, 178, 191, 240, 415, 457, 470
Lsp1109I	GCAGC	3 cut(s)	196, 242, 264
MaeI	CTAG	1 cut(s)	414
MbiI	CCGCTC	1 cut(s)	137
MboII	GAAGA	7 cut(s)	75, 175, 322, 364, 367, 382, 392
MluCI	AATT	3 cut(s)	13, 233, 502
MlyI	GAGTC	3 cut(s)	23, 86, 103
MmeI	TCCRAC	2 cut(s)	57, 153
MslI	CAYNNNNRTG	2 cut(s)	282, 345
MspA1I	CMGCKG	1 cut(s)	255
MwoI	GCNNNNNNNGC	6 cut(s)	166, 206, 209, 249, 406, 516
NlaIII	CATG	3 cut(s)	281, 400, 421
NlaIV	GGNNCC	1 cut(s)	429
NspI	RCATGY	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 158, 324, 369
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	6 cut(s)	199, 202, 211, 242, 254, 257
PleI	GAGTC	3 cut(s)	23, 85, 103
PpsI	GAGTC	3 cut(s)	23, 85, 103
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	195, 428
PvuII	CAGCTG	1 cut(s)	255
RseI	CAYNNNNRTG	2 cut(s)	282, 345
SapI	GCTCTTC	1 cut(s)	395
SatI	GCNGC	6 cut(s)	198, 201, 210, 241, 253, 256
Sau96I	GGNCC	2 cut(s)	195, 428
SchI	GAGTC	3 cut(s)	23, 86, 103
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	282, 345
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	13, 233, 502
SsiI	CCGC	5 cut(s)	137, 198, 201, 240, 422
SspMI	CTAG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	6 cut(s)	48, 66, 152, 183, 223, 393
TasI	AATT	3 cut(s)	13, 233, 502
TauI	GCSGC	3 cut(s)	200, 203, 243
TfiI	GAWTC	1 cut(s)	50
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	3 cut(s)	209, 252, 255
TspDTI	ATGAA	4 cut(s)	17, 113, 393, 482
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	2 cut(s)	233, 502
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.