Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

29554164 .. 29555499

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTGCTTACTGTACTAGACTTGGAAGGTGCACATTTGGAGAAGTTTCCAAGAGAAGTTGTCAAGCTTCTTCTTCTCAAGTATCTTAGCTTGAGGGGTACCAAGGTGAAACAAATTCCAAGCTCCATCAAGAAGCTACGATACCTAGAGACCTTGGATCTTAAACACTCCCATGTAATGGAATTACCTGCGGAGATTTTCAATCTCAAGCGACTTCACCATCTCTTGGTGTACCGATATGAGGTAGAGTCATATGGATGTTTAACTGTCAAAAATGGAGTTAAGGTTCCTGCAGGAATATGTGGCTTGCAATCGCTCCAAAAGCTCTGCTTTATAGAGGCAAATCAAGGCAGTGGTGCCTTAATGGCAGCTTGGGAGAATGGACCAACTAAGGAGGTTAGGCATTTACAAGTTGAAAGAAGAAGATGGGGCCACCTTATGTTCATCCGTCCAAAATATGACCAGCCTTCGCTCGTTGTCTGTATCTTCAGCAAAGAAAGAGAAGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

170

Amino Acids

19.64

Weight (kDa)

9.39

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	2 - 143	1.3e-21	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	2 cut(s)	98, 356
AccB7I	CCANNNNNTGG	2 cut(s)	178, 226
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	472
AfaI	GTAC	3 cut(s)	15, 100, 233
AfiI	CCNNNNNNNGG	3 cut(s)	178, 226, 241
AgsI	TTSAA	2 cut(s)	202, 416
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	6 cut(s)	67, 90, 123, 136, 325, 371
AluI	AGCT	6 cut(s)	67, 90, 123, 136, 325, 371
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	430
ApaLI	GTGCAC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	383, 430
AsuHPI	GGTGA	2 cut(s)	118, 209
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	34
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BanI	GGYRCC	2 cut(s)	98, 356
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	3 cut(s)	134, 228, 420
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	17, 146
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	196
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	383, 430
BmiI	GGNNCC	4 cut(s)	100, 288, 358, 431
BpuEI	CTTGAG	3 cut(s)	62, 112, 191
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	102, 153
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 226, 241
BseDI	CCNNGG	2 cut(s)	102, 153
BseGI	GGATG	2 cut(s)	263, 444
BseLI	CCNNNNNNNGG	3 cut(s)	178, 226, 241
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	432
BshNI	GGYRCC	2 cut(s)	98, 356
BsiHKAI	GWGCWC	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	178, 226, 241
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	432
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	432
BspLI	GGNNCC	4 cut(s)	100, 288, 358, 431
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	2 cut(s)	98, 356
BspTNI	GGTCTC	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	102, 153
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	2 cut(s)	102, 153
Bst4CI	ACNGT	2 cut(s)	13, 268
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	86, 390
BstF5I	GGATG	2 cut(s)	263, 444
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 365
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	263, 444
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	383, 430
Csp6I	GTAC	3 cut(s)	14, 99, 232
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	9 cut(s)	67, 90, 123, 136, 306, 325, 371, 432, 466
CviKI_1	RGCY	9 cut(s)	67, 90, 123, 136, 306, 325, 371, 432, 466
CviQI	GTAC	3 cut(s)	14, 99, 232
DdeI	CTNAG	2 cut(s)	86, 390
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	102, 153
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	472
EcoT14I	CCWWGG	2 cut(s)	102, 153
ErhI	CCWWGG	2 cut(s)	102, 153
FaeI	CATG	1 cut(s)	176
FaiI	YATR	8 cut(s)	174, 240, 253, 255, 301, 335, 440, 459
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	2 cut(s)	270, 431
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	17, 146
GluI	GCNGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	432
Hin1II	CATG	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	248
HphI	GGTGA	2 cut(s)	118, 209
Hpy166II	GTNNAC	2 cut(s)	32, 232
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	32, 232
HpyAV	CCTTC	2 cut(s)	20, 477
HpyCH4III	ACNGT	2 cut(s)	13, 268
HpyCH4V	TGCA	3 cut(s)	32, 293, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 365
HpyF3I	CTNAG	2 cut(s)	86, 390
Hsp92II	CATG	1 cut(s)	176
KpnI	GGTACC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	128, 321
LpnPI	CCDG	4 cut(s)	201, 279, 303, 476
Lsp1109I	GCAGC	1 cut(s)	380
MaeI	CTAG	2 cut(s)	17, 146
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	5 cut(s)	62, 65, 432, 435, 478
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	3 cut(s)	114, 182, 508
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	4 cut(s)	87, 235, 331, 388
MseI	TTAA	4 cut(s)	162, 263, 282, 362
MslI	CAYNNNNRTG	2 cut(s)	171, 256
MwoI	GCNNNNNNNGC	2 cut(s)	322, 365
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	4 cut(s)	100, 288, 358, 431
PflMI	CCANNNNNTGG	2 cut(s)	178, 226
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PspN4I	GGNNCC	4 cut(s)	100, 288, 358, 431
PspPI	GGNCC	2 cut(s)	383, 430
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	15, 100, 233
RsaNI	GTAC	3 cut(s)	14, 99, 232
RseI	CAYNNNNRTG	2 cut(s)	171, 256
SaqAI	TTAA	4 cut(s)	162, 263, 282, 362
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	2 cut(s)	383, 430
SbfI	CCTGCAGG	1 cut(s)	295
SchI	GAGTC	1 cut(s)	257
SdaI	CCTGCAGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	171, 256
SmlI	CTYRAG	3 cut(s)	77, 91, 206
SmoI	CTYRAG	3 cut(s)	77, 91, 206
Sse8387I	CCTGCAGG	1 cut(s)	295
Sse9I	AATT	3 cut(s)	114, 182, 508
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	17, 146
StyI	CCWWGG	2 cut(s)	102, 153
TaaI	ACNGT	2 cut(s)	13, 268
TasI	AATT	3 cut(s)	114, 182, 508
TatI	WGTACW	1 cut(s)	13
Tru1I	TTAA	4 cut(s)	162, 263, 282, 362
Tru9I	TTAA	4 cut(s)	162, 263, 282, 362
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	2 cut(s)	178, 226
VneI	GTGCAC	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	114
XspI	CTAG	2 cut(s)	17, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.