Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

51649327 .. 51652994

Gene Structure 3668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG380200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTGACGGTAATAAGGGGTGTAGTTGACAAGACCCCCACCCCAAGAGGCAGCATCAAATCCAGGTTCGGGTTTTGGGGTCGCATCAAATCAAGTTTCGTCTCCATTTGGGATGGGAGTCATGGTCCCATGAAAGTCCATGCATGTTCACAATCCAGGGAAACAGAAGCTTTCAAGAACTCAAATATGCCGCTGTCCTATATGGAGATGAACAAGACTGCTTTGCATTTAGTTGGGGATGATGGTTTGCAGTTCGGAACTCCAAGTAATATATTTTCCTCTAATGCATTAGAAATTGACAACCAGAAGAGGTATATGGAACTAGCAGACCTGAGGTTAGAGGGACAATTGAGGAGTGAGGAAGTTGAGAAGCTAGTGAGTGTAGCCTTGTGTTGTGTGCATGTAGTGCCACCACTGAAGCCATGTATGATCAATGTGGTTGCTATGTTGGAAGGCAGATTACCTGTAGGGGATCCCCGGACTGAGGCACTTGAATTTTTATGGTTTTATGGTGGAAAATTCACCCAAGCATCCAGAAAGCTTGAATTTTCAGGGAGCAGCAGGTTTTCTTCCCCTGTCAAAATCGATGAACCAGAATCTCTCCTGCGCAAAAATGCAGCAAGCTTTTCATTTCCAAATTGCAGTGGACCTAGCACAACTTCTGTGAATTTGATGCAAACATCTTTCTCTCAATACCAAAAGGAGAGAATGTTTTTGGTGCAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

242

Amino Acids

27.04

Weight (kDa)

8.8

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	552
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	2 cut(s)	467, 480
AcsI	RAATTY	4 cut(s)	494, 518, 545, 667
AcuI	CTGAAG	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	69, 484
AgsI	TTSAA	3 cut(s)	175, 494, 545
AjnI	CCWGG	2 cut(s)	62, 155
AluBI	AGCT	4 cut(s)	170, 373, 541, 624
AluI	AGCT	4 cut(s)	170, 373, 541, 624
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	467, 480
ApeKI	GCWGC	3 cut(s)	51, 558, 617
ApoI	RAATTY	4 cut(s)	494, 518, 545, 667
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	2 cut(s)	125, 647
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	16, 514
AvaII	GGWCC	2 cut(s)	125, 647
AxyI	CCTNAGG	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BbvI	GCAGC	3 cut(s)	63, 570, 629
BccI	CCATC	2 cut(s)	107, 236
BciT130I	CCWGG	2 cut(s)	64, 157
BclI	TGATCA	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	3 cut(s)	323, 374, 651
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	552
BisI	GCNGC	4 cut(s)	52, 191, 559, 618
BlsI	GCNGC	4 cut(s)	53, 192, 560, 619
Bme1390I	CCNGG	3 cut(s)	64, 157, 478
Bme18I	GGWCC	2 cut(s)	125, 647
BmgT120I	GGNCC	2 cut(s)	125, 647
BmiI	GGNNCC	2 cut(s)	127, 474
BmrFI	CCNGG	3 cut(s)	64, 157, 478
BmsI	GCATC	4 cut(s)	63, 93, 539, 663
BpuMI	CCSGG	1 cut(s)	478
Bsa29I	ATCGAT	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	156, 476
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 695, 725
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 484
Bse21I	CCTNAGG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	64, 157
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	156, 476
BseGI	GGATG	3 cut(s)	118, 244, 530
BseLI	CCNNNNNNNGG	2 cut(s)	69, 484
BseMII	CTCAG	2 cut(s)	323, 474
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	63, 570, 629
BshVI	ATCGAT	1 cut(s)	585
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	2 cut(s)	111, 357
BslI	CCNNNNNNNGG	2 cut(s)	69, 484
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	111, 357
Bsp143I	GATC	2 cut(s)	429, 472
BspACI	CCGC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	324, 475
BspDI	ATCGAT	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	127, 474
BspMI	ACCTGC	1 cut(s)	552
BspPI	GGATC	2 cut(s)	467, 480
BssECI	CCNNGG	2 cut(s)	156, 476
BssMI	GATC	2 cut(s)	429, 472
Bst2UI	CCWGG	2 cut(s)	64, 157
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	2 cut(s)	332, 483
BstF5I	GGATG	3 cut(s)	118, 244, 530
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	2 cut(s)	432, 475
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	429, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNI	CCWGG	2 cut(s)	64, 157
BstNSI	RCATGY	2 cut(s)	147, 404
BstSCI	CCNGG	3 cut(s)	62, 155, 476
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	3 cut(s)	63, 570, 629
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	585
Bsu36I	CCTNAGG	1 cut(s)	332
BsuTUI	ATCGAT	1 cut(s)	585
BtsCI	GGATG	3 cut(s)	118, 244, 530
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	2 cut(s)	413, 649
BveI	ACCTGC	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	622
CfoI	GCGC	1 cut(s)	609
Cfr13I	GGNCC	2 cut(s)	125, 647
ClaI	ATCGAT	1 cut(s)	585
CviAII	CATG	6 cut(s)	122, 130, 140, 144, 401, 423
CviJI	RGCY	6 cut(s)	170, 373, 386, 421, 541, 624
CviKI_1	RGCY	6 cut(s)	170, 373, 386, 421, 541, 624
DdeI	CTNAG	2 cut(s)	332, 483
DpnI	GATC	2 cut(s)	431, 474
DpnII	GATC	2 cut(s)	429, 472
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	125, 647
Eco57I	CTGAAG	1 cut(s)	437
Eco81I	CCTNAGG	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	62, 155
EcoT22I	ATGCAT	2 cut(s)	145, 289
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	6 cut(s)	125, 133, 143, 147, 404, 426
FaqI	GGGAC	2 cut(s)	111, 357
FatI	CATG	6 cut(s)	121, 129, 139, 143, 400, 422
FbaI	TGATCA	1 cut(s)	429
Fnu4HI	GCNGC	4 cut(s)	52, 191, 559, 618
FokI	GGATG	3 cut(s)	125, 251, 517
Fsp4HI	GCNGC	4 cut(s)	52, 191, 559, 618
FspBI	CTAG	3 cut(s)	323, 374, 651
FspI	TGCGCA	1 cut(s)	608
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	4 cut(s)	52, 191, 559, 618
HapII	CCGG	1 cut(s)	478
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	6 cut(s)	125, 133, 143, 147, 404, 426
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	3 cut(s)	168, 539, 622
HinfI	GANTC	2 cut(s)	118, 596
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	2 cut(s)	16, 514
Hpy166II	GTNNAC	3 cut(s)	28, 149, 647
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	2 cut(s)	175, 534
Hpy8I	GTNNAC	3 cut(s)	28, 149, 647
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	9 cut(s)	143, 226, 250, 287, 400, 617, 642, 676, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	2 cut(s)	332, 483
Hsp92II	CATG	6 cut(s)	125, 133, 143, 147, 404, 426
HspAI	GCGC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	429, 472
LmnI	GCTCC	1 cut(s)	555
Lsp1109I	GCAGC	3 cut(s)	63, 570, 629
LweI	GCATC	4 cut(s)	63, 93, 539, 663
MaeI	CTAG	3 cut(s)	323, 374, 651
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	431, 474
MboI	GATC	2 cut(s)	429, 472
MboII	GAAGA	2 cut(s)	319, 561
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	7 cut(s)	294, 347, 494, 518, 545, 637, 667
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	8 cut(s)	41, 289, 303, 327, 334, 345, 352, 478
Mph1103I	ATGCAT	2 cut(s)	145, 289
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	3 cut(s)	64, 157, 478
MunI	CAATTG	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	64, 157
MwoI	GCNNNNNNNGC	1 cut(s)	406
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	2 cut(s)	429, 472
NlaIII	CATG	6 cut(s)	125, 133, 143, 147, 404, 426
NlaIV	GGNNCC	2 cut(s)	127, 474
NmuCI	GTSAC	1 cut(s)	4
NsbI	TGCGCA	1 cut(s)	608
NsiI	ATGCAT	2 cut(s)	145, 289
NspI	RCATGY	2 cut(s)	147, 404
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	4 cut(s)	53, 192, 560, 619
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	62, 155
PspGI	CCWGG	2 cut(s)	62, 155
PspN4I	GGNNCC	2 cut(s)	127, 474
PspPI	GGNCC	2 cut(s)	125, 647
PsuI	RGATCY	1 cut(s)	472
SatI	GCNGC	4 cut(s)	52, 191, 559, 618
Sau3AI	GATC	2 cut(s)	429, 472
Sau96I	GGNCC	2 cut(s)	125, 647
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	3 cut(s)	64, 157, 478
SfaNI	GCATC	4 cut(s)	63, 93, 539, 663
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	125, 647
Sse9I	AATT	7 cut(s)	294, 347, 494, 518, 545, 637, 667
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	3 cut(s)	323, 374, 651
StyD4I	CCNGG	3 cut(s)	62, 155, 476
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	585
TasI	AATT	7 cut(s)	294, 347, 494, 518, 545, 637, 667
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	596
TscAI	CASTG	2 cut(s)	420, 649
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	3 cut(s)	51, 558, 617
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	4 cut(s)	146, 224, 603, 618
TspRI	CASTG	2 cut(s)	420, 649
VpaK11BI	GGWCC	2 cut(s)	125, 647
XapI	RAATTY	4 cut(s)	494, 518, 545, 667
XceI	RCATGY	2 cut(s)	147, 404
XspI	CTAG	3 cut(s)	323, 374, 651
Zsp2I	ATGCAT	2 cut(s)	145, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.