Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

58446885 .. 58447175

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG414900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGTGTCCGAAATCCGGGAACCGGGAAAGAAAACCCGAGAATATGGCTAGGAAGCTACAAGGGCTCCGTAATGGCGGCCGCGGCCTACGATGCGGCGGCATTGCACCTCAGAGGACCAGGGGTGTCGCTTAAATTTCCTGAAATGGTTGATAGTCTTCCGAGGCCGGCGAGTTCGAGTCCCTCGGACGTGCAGTTGGCGGCTCAAGAGGCGGCAGTGAGGTTTAGGAGACTACCAATGGGGTCGTTTTCGACGGAGGTGGCTGGTGGCTCCAGTGGTGGCGCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

96

Amino Acids

9.86

Weight (kDa)

9.81

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	83, 284
AciI	CCGC	8 cut(s)	77, 81, 83, 95, 98, 200, 212, 284
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	16, 23
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	3 cut(s)	78, 84, 164
ApoI	RAATTY	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	2 cut(s)	18, 25
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	2 cut(s)	18, 25
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	7 cut(s)	78, 81, 84, 96, 99, 201, 213
BlsI	GCNGC	7 cut(s)	79, 82, 85, 97, 100, 202, 214
Bme1390I	CCNGG	3 cut(s)	18, 25, 120
Bme18I	GGWCC	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	3 cut(s)	22, 67, 271
BmrFI	CCNGG	3 cut(s)	18, 25, 120
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	189
BpuMI	CCSGG	2 cut(s)	18, 25
BsaJI	CCNNGG	4 cut(s)	81, 119, 161, 183
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 23
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	4 cut(s)	81, 119, 161, 183
BseLI	CCNNNNNNNGG	2 cut(s)	16, 23
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	273
BseX3I	CGGCCG	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	83, 284
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	80, 86, 166
BsiEI	CGRYCG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	3 cut(s)	17, 24, 167
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	16, 23
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	80, 86, 166
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	68
BspACI	CCGC	8 cut(s)	77, 81, 83, 95, 98, 200, 212, 284
BspANI	GGCC	3 cut(s)	80, 86, 166
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	83, 284
BspLI	GGNNCC	3 cut(s)	22, 67, 271
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	4 cut(s)	81, 119, 161, 183
Bst2UI	CCWGG	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	81
BstFNI	CGCG	2 cut(s)	83, 284
BstHHI	GCGC	1 cut(s)	284
BstMAI	GTCTC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 83, 92, 209
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	16, 23, 118
BstUI	CGCG	2 cut(s)	83, 284
BstV2I	GAAGAC	1 cut(s)	149
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	3 cut(s)	80, 86, 166
BtgI	CCRYGG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 280
Cac8I	GCNNGC	1 cut(s)	168
CciNI	GCGGCCGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	116
Cfr42I	CCGCGG	1 cut(s)	84
CviJI	RGCY	9 cut(s)	49, 57, 66, 80, 86, 166, 203, 263, 270
CviKI_1	RGCY	9 cut(s)	49, 57, 66, 80, 86, 166, 203, 263, 270
DdeI	CTNAG	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	116
Eco52I	CGGCCG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	68
FaiI	YATR	1 cut(s)	46
FaqI	GGGAC	1 cut(s)	165
Fnu4HI	GCNGC	7 cut(s)	78, 81, 84, 96, 99, 201, 213
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	7 cut(s)	78, 81, 84, 96, 99, 201, 213
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	7 cut(s)	78, 81, 84, 96, 99, 201, 213
GsuI	CTGGAG	1 cut(s)	256
HaeIII	GGCC	3 cut(s)	80, 86, 166
HapII	CCGG	3 cut(s)	17, 24, 167
HhaI	GCGC	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	17, 24, 167
Hpy188I	TCNGA	4 cut(s)	11, 113, 162, 187
Hpy188III	TCNNGA	2 cut(s)	140, 206
Hpy99I	CGWCG	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	106, 193
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 83, 92, 209
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	189
HspAI	GCGC	1 cut(s)	282
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
KspI	CCGCGG	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	71, 275
LpnPI	CCDG	8 cut(s)	30, 37, 105, 132, 153, 180, 249, 286
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	189
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	7 cut(s)	107, 119, 156, 193, 202, 213, 250
MroNI	GCCGGC	1 cut(s)	166
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	17, 24, 167
MspR9I	CCNGG	3 cut(s)	18, 25, 120
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	2 cut(s)	83, 284
MwoI	GCNNNNNNNGC	4 cut(s)	63, 83, 92, 209
NaeI	GCCGGC	1 cut(s)	168
NciI	CCSGG	2 cut(s)	18, 25
NgoMIV	GCCGGC	1 cut(s)	166
NlaIV	GGNNCC	3 cut(s)	22, 67, 271
NotI	GCGGCCGC	1 cut(s)	78
PdiI	GCCGGC	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	7 cut(s)	79, 82, 85, 97, 100, 202, 214
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	3 cut(s)	22, 67, 271
PspPI	GGNCC	1 cut(s)	116
SacII	CCGCGG	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	7 cut(s)	78, 81, 84, 96, 99, 201, 213
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	18, 25, 120
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	5 cut(s)	59, 111, 192, 224, 261
SfaNI	GCATC	1 cut(s)	82
Sfr303I	CCGCGG	1 cut(s)	84
SgrBI	CCGCGG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	8 cut(s)	77, 81, 83, 95, 98, 200, 212, 284
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	16, 23, 118
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	176, 251
TasI	AATT	1 cut(s)	134
TauI	GCSGC	7 cut(s)	80, 83, 86, 98, 101, 203, 215
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	222, 280
TspGWI	ACGGA	2 cut(s)	58, 269
TspRI	CASTG	2 cut(s)	222, 280
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	134
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.