Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00088

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

50921 .. 55886

Gene Structure 4966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTTGATTTTCTTCTTTCAGTATTAGATTTAAGTGGATTTAGGGTGAGACAACAGATTGTTCCTGAGAAAATGGAGAGGGTGAGATATTTGGAAAGGGAGACAACAGATTTTGGAAGAGTATTTGGCCACGAAAGAATGAGAAAGGATAGAGCTTTATATAGAATGATAGAACAGTATCGAGGACGAAGTCCTAATGCCCTCTCCACAAAGTTAGACTGGGAAAACCAATTGAGAAAAGCTTTTGAAGCTGCAAAAGGTTTGGAGTATCTCCATGAGCAAGTCTTTGCTGACATGAAATTTCTGACCATCGACTTTTGTTGTACGGCTCTTCTCTTCTGGCTTTTAGGCTGCATCAGTATTGGAGAATGTGGATTATGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

128

Amino Acids

15.18

Weight (kDa)

7.63

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	3 cut(s)	155, 242, 251
AluI	AGCT	3 cut(s)	155, 242, 251
Alw26I	GTCTC	2 cut(s)	43, 95
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	251, 351
ApoI	RAATTY	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	58, 94
BalI	TGGCCA	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	238, 338
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	43, 95
BisI	GCNGC	2 cut(s)	252, 352
BlsI	GCNGC	2 cut(s)	253, 353
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	238, 338
BshFI	GGCC	1 cut(s)	129
BsmAI	GTCTC	2 cut(s)	43, 95
BsnI	GGCC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	58
BspQI	GCTCTTC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	3 cut(s)	112, 336, 341
BstDEI	CTNAG	1 cut(s)	66
BstMAI	GTCTC	2 cut(s)	43, 95
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	238, 338
BsuRI	GGCC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	2 cut(s)	275, 295
CviJI	RGCY	7 cut(s)	129, 155, 242, 251, 329, 343, 351
CviKI_1	RGCY	7 cut(s)	129, 155, 242, 251, 329, 343, 351
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	112, 336, 341
EarI	CTCTTC	3 cut(s)	112, 336, 341
FaeI	CATG	2 cut(s)	278, 298
FaiI	YATR	5 cut(s)	160, 162, 276, 296, 379
FatI	CATG	2 cut(s)	274, 294
Fnu4HI	GCNGC	2 cut(s)	252, 352
Fsp4HI	GCNGC	2 cut(s)	252, 352
GluI	GCNGC	2 cut(s)	252, 352
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	278, 298
HindIII	AAGCTT	1 cut(s)	240
HphI	GGTGA	2 cut(s)	58, 94
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	254, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	278, 298
LguI	GCTCTTC	1 cut(s)	336
LpnPI	CCDG	3 cut(s)	78, 205, 325
Lsp1109I	GCAGC	2 cut(s)	238, 338
LweI	GCATC	1 cut(s)	363
MboII	GAAGA	4 cut(s)	5, 129, 323, 328
MfeI	CAATTG	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	2 cut(s)	230, 299
MluNI	TGGCCA	1 cut(s)	129
MnlI	CCTC	3 cut(s)	72, 176, 212
Mox20I	TGGCCA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	2 cut(s)	32, 385
Msp20I	TGGCCA	1 cut(s)	129
MunI	CAATTG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	248
NlaIII	CATG	2 cut(s)	278, 298
PciSI	GCTCTTC	1 cut(s)	336
PflFI	GACNNNGTC	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	253, 353
PsyI	GACNNNGTC	1 cut(s)	189
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	32, 385
SatI	GCNGC	2 cut(s)	252, 352
SetI	ASST	4 cut(s)	157, 244, 253, 262
SfaNI	GCATC	1 cut(s)	363
SgeI	CNNG	8 cut(s)	77, 143, 194, 232, 287, 293, 307, 352
Sse9I	AATT	2 cut(s)	230, 299
TaaI	ACNGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	181, 312
TasI	AATT	2 cut(s)	230, 299
Tru1I	TTAA	2 cut(s)	32, 385
Tru9I	TTAA	2 cut(s)	32, 385
TseI	GCWGC	2 cut(s)	251, 351
TspDTI	ATGAA	1 cut(s)	311
Tth111I	GACNNNGTC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.