Rw0G011880

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00516
N/A
Physical Location & Seq
Reverse (-)
31444 .. 32327
884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011880.1

Sequence Viewer

Length: 489 bp
ATGTCTTCATCAGTTTTAGAGGCGATGACACTCGCAAGATCTTTGTCGGCCATCTCTACAGAGCTCTCCATCAGAAAGCAATCAACACCTTCATCGATTCCGACGAGCTTAGAAACGGTAACAGCCCTTCAGAGCTTCTGGAAGCCATCGCCGACTCGAGGCTTTCCGTTGTGGTGTTCTCTAAACACTATGCTTCTTCCGAGTGGTGCCGAGTGCATGAAAACGATGAAGCAGATTGTGGTGCCCGTTTTCTACGAACTTGATAGTTCCGATATTCGGAAACTCAAGGCGAGTTTTGAGCAAGCTTTTGCTGAACATTTGCATGATTCTAATGCCGATGTGGAAGAGGTGCAGAGGTGGAAGTCTGCTCTAGTTGAGGCCTCCAATTTATCTGGCTGGGATTCACGAAATTATGAGGATGACGCCAAGCTTATTGAGAAAATAGTCGGTGATATTTCTAAAAGATTGATCCGCGTCTCATCCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

162

Amino Acids

18.03

Weight (kDa)

5.73

Isoelectric Point (pI)

62.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 69 - 156 2.6e-17 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 241
AccII CGCG 1 cut(s) 474
AciI CCGC 1 cut(s) 472
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 423
AfiI CCNNNNNNNGG 2 cut(s) 158, 276
AluBI AGCT 5 cut(s) 64, 108, 135, 305, 430
AluI AGCT 5 cut(s) 64, 108, 135, 305, 430
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 2 cut(s) 48, 378
AsuHPI GGTGA 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 246
BanI GGYRCC 2 cut(s) 206, 241
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
Bbv12I GWGCWC 1 cut(s) 66
BccI CCATC 3 cut(s) 59, 77, 154
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 57
BglII AGATCT 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 208, 243
BpuEI CTTGAG 1 cut(s) 269
Bsa29I ATCGAT 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 423
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 276
BseCI ATCGAT 1 cut(s) 95
BseGI GGATG 2 cut(s) 424, 479
BseLI CCNNNNNNNGG 2 cut(s) 158, 276
BseSI GKGCMC 1 cut(s) 246
BseYI CCCAGC 1 cut(s) 396
BsgI GTGCAG 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 2 cut(s) 50, 380
BshNI GGYRCC 2 cut(s) 206, 241
BshVI ATCGAT 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 158, 276
BsmAI GTCTC 1 cut(s) 481
BsmBI CGTCTC 1 cut(s) 481
BsnI GGCC 2 cut(s) 50, 380
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 66, 246
Bsp143I GATC 2 cut(s) 38, 468
BspACI CCGC 1 cut(s) 472
BspANI GGCC 2 cut(s) 50, 380
BspDI ATCGAT 1 cut(s) 95
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 2 cut(s) 208, 243
BspPI GGATC 1 cut(s) 463
BspT107I GGYRCC 2 cut(s) 206, 241
BssMI GATC 2 cut(s) 38, 468
BssNI GRCGYC 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 424, 479
BstFNI CGCG 1 cut(s) 474
BstKTI GATC 2 cut(s) 41, 471
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 2 cut(s) 38, 468
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
Bsu15I ATCGAT 1 cut(s) 95
BsuRI GGCC 2 cut(s) 50, 380
BsuTUI ATCGAT 1 cut(s) 95
BtgZI GCGATG 2 cut(s) 38, 132
BtsCI GGATG 2 cut(s) 424, 479
Cac8I GCNNGC 1 cut(s) 303
ClaI ATCGAT 1 cut(s) 95
CseI GACGC 2 cut(s) 431, 463
CviAII CATG 2 cut(s) 217, 323
DdeI CTNAG 1 cut(s) 109
DpnI GATC 2 cut(s) 40, 470
DpnII GATC 2 cut(s) 38, 468
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 64
Eco147I AGGCCT 1 cut(s) 380
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 481
FaeI CATG 2 cut(s) 220, 326
FaiI YATR 5 cut(s) 191, 218, 324, 414, 487
FatI CATG 2 cut(s) 216, 322
FokI GGATG 2 cut(s) 431, 466
FriOI GRGCYC 1 cut(s) 66
FspBI CTAG 1 cut(s) 371
GsaI CCCAGC 1 cut(s) 400
HaeIII GGCC 2 cut(s) 50, 380
HgaI GACGC 2 cut(s) 431, 463
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 2 cut(s) 220, 326
HindIII AAGCTT 2 cut(s) 303, 428
HinfI GANTC 4 cut(s) 97, 154, 326, 401
HphI GGTGA 1 cut(s) 461
Hpy188I TCNGA 6 cut(s) 74, 102, 132, 201, 271, 279
Hpy188III TCNNGA 2 cut(s) 139, 405
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 99, 137
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 216, 322, 352
HpyF3I CTNAG 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 2 cut(s) 220, 326
Kzo9I GATC 2 cut(s) 38, 468
LpnPI CCDG 3 cut(s) 124, 378, 382
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 40, 470
MboI GATC 2 cut(s) 38, 468
MboII GAAGA 2 cut(s) 188, 356
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 66, 246
MluCI AATT 2 cut(s) 385, 409
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 7 cut(s) 13, 152, 340, 348, 370, 391, 409
MslI CAYNNNNRTG 1 cut(s) 321
MvnI CGCG 1 cut(s) 474
NdeII GATC 2 cut(s) 38, 468
NlaIII CATG 2 cut(s) 220, 326
NlaIV GGNNCC 2 cut(s) 208, 243
NmeAIII GCCGAG 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 156
PceI AGGCCT 1 cut(s) 380
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PfeI GAWTC 3 cut(s) 97, 326, 401
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 208, 243
PspXI VCTCGAGB 1 cut(s) 156
PsuI RGATCY 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 38, 468
SchI GAGTC 1 cut(s) 148
SduI GDGCHC 2 cut(s) 66, 246
SetI ASST 8 cut(s) 66, 91, 110, 137, 307, 351, 359, 432
SfcI CTRYAG 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 156
SlaI CTCGAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 156, 284
SmoI CTYRAG 2 cut(s) 156, 284
Sse9I AATT 2 cut(s) 385, 409
SseBI AGGCCT 1 cut(s) 380
SsiI CCGC 1 cut(s) 472
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 66
StuI AGGCCT 1 cut(s) 380
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 95, 157
TasI AATT 2 cut(s) 385, 409
TfiI GAWTC 3 cut(s) 97, 326, 401
TspDTI ATGAA 3 cut(s) 81, 233, 242
TspGWI ACGGA 2 cut(s) 156, 472
XhoI CTCGAG 1 cut(s) 156
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.