Rw0G022170

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01027
N/A
Physical Location & Seq
Forward (+)
75194 .. 76228
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022170.1

Sequence Viewer

Length: 690 bp
ATGAGCAGTTTATTCAGCGACAAACTTCATCTTTGGTCGATATATCTACGATTTGGCCGAGAAGAAGAAAAAGAGTATTTGTTGAGCAAGTTGTTGAGAGAGAGTCACCAGGATAGGGGGAGGTTCCCTGTCATCCCTATCGTAGGGATGGGAGGGATGGGGAAAACAACTCTCGCCCAACTAGTCTTTAACAATGAAAAGGTTGCAGCCCATTTTGATAAGAAAGTATGGGTTTGTGTCTCGGACCCTTTTGACGAGATTAAAATCGCCAAAGCTATTTTTGAAAGCCTGCTAGATAAAAATGAAAATCAGAGTTGTTCAAATGAGCTGGAAACTGTACTGTTATGTATAAGGACACGTGTTGAGAATAAGAAGTTCCTCCTAGTCCTAGATGATGTGTGGACCGAAGACGAAACAAAGTGGGAAAATTTGAAACTGCAAGTGATAATGCAAAGCTGTGCTCAGGACAGTACAATATTGGTGACCACACGAAACGAAGGGGTTGCTAAAATGATGAGAGCAACCAGCAGCATGATCCATTTGGACAAGTTGAGCGATAGGGATTGTCTAGCATTGTTCAATAGCTTTGCATTTTTGGATAGGGAAGAAGATGAGGCTAATGGGTTTGGAGTTATTGGTGCGGAAATTGTGAAAAAGTGTAAAGGTTTGCCTCTTGTGCAAAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

229

Amino Acids

26.2

Weight (kDa)

5.69

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_16 PF13191 18 - 108 1.2e-06 AAA ATPase domain
NB-ARC PF00931 21 - 199 2.1e-37 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 641
AclWI GGATC 1 cut(s) 529
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 1 cut(s) 427
AcvI CACGTG 1 cut(s) 359
AfaI GTAC 2 cut(s) 339, 472
AfiI CCNNNNNNNGG 2 cut(s) 115, 143
AflIII ACRYGT 2 cut(s) 356, 358
AgsI TTSAA 4 cut(s) 284, 321, 433, 580
AhlI ACTAGT 1 cut(s) 181
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 4 cut(s) 275, 328, 456, 585
AluI AGCT 4 cut(s) 275, 328, 456, 585
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 529
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 206, 528
ApoI RAATTY 1 cut(s) 427
AspS9I GGNCC 2 cut(s) 244, 402
AsuHPI GGTGA 2 cut(s) 98, 493
AvaII GGWCC 2 cut(s) 244, 402
BbrPI CACGTG 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 2 cut(s) 218, 540
BccI CCATC 2 cut(s) 142, 151
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 244
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 5 cut(s) 182, 293, 383, 389, 569
BisI GCNGC 2 cut(s) 207, 529
BlsI GCNGC 2 cut(s) 208, 530
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 244, 402
BmgT120I GGNCC 2 cut(s) 244, 402
BmiI GGNNCC 2 cut(s) 125, 246
BmrFI CCNGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 263
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 143
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 110
BseGI GGATG 3 cut(s) 132, 153, 162
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 2 cut(s) 115, 143
BseMII CTCAG 1 cut(s) 476
BseXI GCAGC 2 cut(s) 218, 540
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 463
BslI CCNNNNNNNGG 2 cut(s) 115, 143
BsmAI GTCTC 1 cut(s) 244
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 1 cut(s) 534
BspACI CCGC 1 cut(s) 641
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 475
BspLI GGNNCC 2 cut(s) 125, 246
BspPI GGATC 1 cut(s) 529
BssMI GATC 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 337, 342, 470
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 462
BstEII GGTNACC 1 cut(s) 481
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 132, 153, 162
BstKTI GATC 1 cut(s) 537
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 1 cut(s) 534
BstMWI GCNNNNNNNGC 1 cut(s) 676
BstNI CCWGG 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 218, 540
BstV2I GAAGAC 1 cut(s) 414
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 3 cut(s) 132, 153, 162
Cac8I GCNNGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 244, 402
Csp6I GTAC 2 cut(s) 338, 471
CviAII CATG 1 cut(s) 532
CviJI RGCY 8 cut(s) 57, 209, 275, 288, 328, 456, 585, 617
CviKI_1 RGCY 8 cut(s) 57, 209, 275, 288, 328, 456, 585, 617
CviQI GTAC 2 cut(s) 338, 471
DdeI CTNAG 1 cut(s) 462
DpnI GATC 1 cut(s) 536
DpnII GATC 1 cut(s) 534
EaeI YGGCCR 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 244, 402
Eco72I CACGTG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 481
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoO65I GGTNACC 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 535
FaiI YATR 5 cut(s) 43, 229, 346, 350, 533
FatI CATG 1 cut(s) 531
Fnu4HI GCNGC 2 cut(s) 207, 529
FokI GGATG 3 cut(s) 119, 160, 169
Fsp4HI GCNGC 2 cut(s) 207, 529
FspBI CTAG 5 cut(s) 182, 293, 383, 389, 569
GluI GCNGC 2 cut(s) 207, 529
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 1 cut(s) 535
HinfI GANTC 1 cut(s) 103
HphI GGTGA 2 cut(s) 98, 493
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 2 cut(s) 244, 312
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 1 cut(s) 402
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 3 cut(s) 337, 342, 470
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 206, 439, 451, 590, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 676
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 1 cut(s) 535
Kzo9I GATC 1 cut(s) 534
LpnPI CCDG 7 cut(s) 95, 122, 141, 302, 314, 449, 538
Lsp1109I GCAGC 2 cut(s) 218, 540
MaeI CTAG 5 cut(s) 182, 293, 383, 389, 569
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 2 cut(s) 104, 481
MalI GATC 1 cut(s) 536
MboI GATC 1 cut(s) 534
MboII GAAGA 5 cut(s) 74, 77, 419, 617, 620
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 2 cut(s) 427, 645
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 5 cut(s) 114, 146, 389, 607, 681
MseI TTAA 2 cut(s) 189, 261
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 676
NdeII GATC 1 cut(s) 534
NlaIII CATG 1 cut(s) 535
NlaIV GGNNCC 2 cut(s) 125, 246
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 2 cut(s) 104, 481
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PkrI GCNGC 2 cut(s) 208, 530
PleI GAGTC 1 cut(s) 111
PmaCI CACGTG 1 cut(s) 359
PmlI CACGTG 1 cut(s) 359
PpsI GAGTC 1 cut(s) 111
Ppu21I YACGTR 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 108
PspCI CACGTG 1 cut(s) 359
PspEI GGTNACC 1 cut(s) 481
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 125, 246
PspPI GGNCC 2 cut(s) 244, 402
RsaI GTAC 2 cut(s) 339, 472
RsaNI GTAC 2 cut(s) 338, 471
SaqAI TTAA 2 cut(s) 189, 261
SatI GCNGC 2 cut(s) 207, 529
Sau3AI GATC 1 cut(s) 534
Sau96I GGNCC 2 cut(s) 244, 402
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 463
SetI ASST 8 cut(s) 125, 204, 277, 330, 361, 458, 587, 667
SinI GGWCC 2 cut(s) 244, 402
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 2 cut(s) 427, 645
SsiI CCGC 1 cut(s) 641
SspI AATATT 1 cut(s) 477
SspMI CTAG 5 cut(s) 182, 293, 383, 389, 569
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 337, 342, 470
TaiI ACGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 38
TaqII GACCGA 1 cut(s) 419
TasI AATT 2 cut(s) 427, 645
TatI WGTACW 2 cut(s) 337, 470
Tru1I TTAA 2 cut(s) 189, 261
Tru9I TTAA 2 cut(s) 189, 261
TseFI GTSAC 2 cut(s) 104, 481
TseI GCWGC 2 cut(s) 206, 528
Tsp45I GTSAC 2 cut(s) 104, 481
TspDTI ATGAA 3 cut(s) 17, 210, 318
VpaK11BI GGWCC 2 cut(s) 244, 402
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 1 cut(s) 427
XspI CTAG 5 cut(s) 182, 293, 383, 389, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.