Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01056

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16881 .. 18029

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTTAGGAAGATTCCCGCGAGAAGGGTTGGTCATCTTGGTGAGGCTGCAAATCCGATTAATACGCTTGAAGCTGCATTGCCTGATCGACCTGGTGTCTGTGGGGACAATAGTATCTGCACTTTGAAAGCAGATAAGAGGCCAACCTGTGAATGCCCAAGAGGATACTCTTTACTTGATCCAAACGACCCGTACGGGACCTGCAATCCAGATTTCAGACAAGACTCTGACAATGAGCTTAGTTATTCAAAAGATCTGTTTGATGTTCAGATGCGGCTGTGTATCTGCTATGTACTGAAGTCTCTCAAAGTAGATGGCCAGCATGTAATGGTCCCCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

113

Amino Acids

12.64

Weight (kDa)

6.7

Isoelectric Point (pI)

23.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AccII	CGCG	1 cut(s)	20
AciI	CCGC	3 cut(s)	18, 274, 337
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	194, 294
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	71, 127, 249
AhdI	GACNNNNNGTC	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	2 cut(s)	74, 238
AluI	AGCT	2 cut(s)	74, 238
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	2 cut(s)	140, 316
ApeKI	GCWGC	2 cut(s)	47, 74
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	198, 331
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	2 cut(s)	198, 331
BaeI	ACNNNNGTAYC	2 cut(s)	97, 130
BalI	TGGCCA	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	34, 61
BccI	CCATC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	93
BciVI	GTATCC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	3 cut(s)	48, 75, 275
BlsI	GCNGC	3 cut(s)	49, 76, 276
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	2 cut(s)	198, 331
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	198, 331
BmiI	GGNNCC	2 cut(s)	199, 333
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	34, 61
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	142, 318
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	3 cut(s)	119, 211, 317
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	306
BsmFI	GGGAC	3 cut(s)	119, 211, 317
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	142, 318
Bsp143I	GATC	3 cut(s)	85, 178, 253
BspACI	CCGC	3 cut(s)	18, 274, 337
BspANI	GGCC	2 cut(s)	142, 318
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	199, 333
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	77
BssMI	GATC	3 cut(s)	85, 178, 253
Bst2UI	CCWGG	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	239
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	3 cut(s)	88, 181, 256
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	3 cut(s)	85, 178, 253
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	34, 61
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	142, 318
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	198, 331
CsiI	ACCWGGT	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	193, 293
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	6 cut(s)	47, 74, 142, 238, 277, 318
CviKI_1	RGCY	6 cut(s)	47, 74, 142, 238, 277, 318
CviQI	GTAC	2 cut(s)	193, 293
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	87, 180, 255
DpnII	GATC	3 cut(s)	85, 178, 253
DriI	GACNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	316
Eam1105I	GACNNNNNGTC	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	198, 331
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	326
FaiI	YATR	2 cut(s)	291, 324
FaqI	GGGAC	3 cut(s)	119, 211, 317
FatI	CATG	1 cut(s)	322
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	48, 75, 275
Fsp4HI	GCNGC	3 cut(s)	48, 75, 275
GluI	GCNGC	3 cut(s)	48, 75, 275
HaeIII	GGCC	2 cut(s)	142, 318
Hin1II	CATG	1 cut(s)	326
HinfI	GANTC	2 cut(s)	13, 224
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	4 cut(s)	57, 218, 229, 270
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	50, 77, 120, 204
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	326
Kzo9I	GATC	3 cut(s)	85, 178, 253
LpnPI	CCDG	7 cut(s)	78, 96, 105, 160, 214, 222, 332
Lsp1109I	GCAGC	2 cut(s)	34, 61
LweI	GCATC	1 cut(s)	261
MabI	ACCWGGT	1 cut(s)	91
MalI	GATC	3 cut(s)	87, 180, 255
MboI	GATC	3 cut(s)	85, 178, 253
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	1 cut(s)	253
MlsI	TGGCCA	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	3 cut(s)	37, 132, 155
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	20
NdeII	GATC	3 cut(s)	85, 178, 253
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	2 cut(s)	199, 333
NspI	RCATGY	1 cut(s)	326
PctI	GAATGC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	13
Pfl23II	CGTACG	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	49, 76, 276
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	198
PshBI	ATTAAT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	199, 333
PspPI	GGNCC	2 cut(s)	198, 331
PspPPI	RGGWCCY	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	2 cut(s)	194, 294
RsaNI	GTAC	2 cut(s)	193, 293
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	3 cut(s)	48, 75, 275
Sau3AI	GATC	3 cut(s)	85, 178, 253
Sau96I	GGNCC	2 cut(s)	198, 331
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	5 cut(s)	76, 94, 149, 203, 240
SexAI	ACCWGGT	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	261
SinI	GGWCC	2 cut(s)	198, 331
SmiMI	CAYNNNNRTG	1 cut(s)	39
SsiI	CCGC	3 cut(s)	18, 274, 337
StyD4I	CCNGG	1 cut(s)	91
TaqI	TCGA	1 cut(s)	88
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseI	GCWGC	2 cut(s)	47, 74
VpaK11BI	GGWCC	2 cut(s)	198, 331
VspI	ATTAAT	1 cut(s)	60
XceI	RCATGY	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.