Rw1G008400

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
N/A
Physical Location & Seq
Forward (+)
18128775 .. 18137883
9109 bp
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UTR
Exon/CDS
Intron
Rw1G008400.1

Sequence Viewer

Length: 402 bp
ATGGTTTGGCCACTTTTTTACAAGGTGGATCCCTCACATGTGAGACATCAAACTGGTACTTTTGGTGATGTATTTGTGGTTCAAGAATGCAAATACAAGGACTACACGGAAAGAGTGCTCCTTTGGAGAGAAGCTCTTGTGCAAGCAGCAAATTTGTCTGGATGGACTTTCAAGAAGGGAGAGTATGAATCTAAGTTCATCAACAACATAGTGGAGCAGTTCTCAGTCCAAGTACTAAATAGCACATGCTTGAATGTGGCTAAACACCCTGTTGGAATACAATCTTGCGTGGAAGTGCACTGGTATTTAGGTCTGAGTCAAGGTTGTTGTCGCATGGTCGGAATATGGGGCATAGCAGGAATAGGCAAGACAACGATTACCCTTTGTTCACAATTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

133

Amino Acids

15.12

Weight (kDa)

8.23

Isoelectric Point (pI)

27.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 79 5.2e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 23, 36
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 2 cut(s) 58, 234
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 4 cut(s) 83, 172, 253, 397
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw21I GWGCWC 2 cut(s) 120, 300
Alw26I GTCTC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 296
AlwI GGATC 2 cut(s) 23, 36
AoxI GGCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 300
BalI TGGCCA 1 cut(s) 10
BamHI GGATCC 1 cut(s) 28
Bbv12I GWGCWC 2 cut(s) 120, 300
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 37
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmcAI AGTACT 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 30
BplI GAGNNNNNCTC 4 cut(s) 118, 150, 206, 238
Bse1I ACTGG 2 cut(s) 58, 305
BseGI GGATG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 237, 305
BseNI ACTGG 2 cut(s) 58, 305
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 120, 300
BsmAI GTCTC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 120, 300
Bsp143I GATC 1 cut(s) 28
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 236, 306
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 2 cut(s) 23, 36
BsrI ACTGG 2 cut(s) 58, 305
BssMI GATC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 3 cut(s) 192, 223, 314
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 28
BstNSI RCATGY 2 cut(s) 41, 249
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 57, 233
CviAII CATG 3 cut(s) 38, 246, 334
CviJI RGCY 3 cut(s) 10, 134, 260
CviKI_1 RGCY 3 cut(s) 10, 134, 260
CviQI GTAC 2 cut(s) 57, 233
DdeI CTNAG 3 cut(s) 192, 223, 314
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 8
FaeI CATG 3 cut(s) 41, 249, 337
FaiI YATR 7 cut(s) 39, 186, 209, 247, 335, 346, 353
FatI CATG 3 cut(s) 37, 245, 333
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 3 cut(s) 41, 249, 337
HinfI GANTC 2 cut(s) 188, 316
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 298, 389
Hpy188I TCNGA 2 cut(s) 315, 341
Hpy188III TCNNGA 3 cut(s) 83, 159, 172
Hpy8I GTNNAC 2 cut(s) 298, 389
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 90, 142, 298
HpyF3I CTNAG 3 cut(s) 192, 223, 314
Hsp92II CATG 3 cut(s) 41, 249, 337
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 2 cut(s) 123, 214
LpnPI CCDG 5 cut(s) 39, 144, 282, 286, 342
Lsp1109I GCAGC 1 cut(s) 158
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 120, 300
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 3 cut(s) 151, 392, 397
MluNI TGGCCA 1 cut(s) 10
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 253, 319
MnlI CCTC 1 cut(s) 43
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 1 cut(s) 400
Msp20I TGGCCA 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 92
NdeII GATC 1 cut(s) 28
NlaIII CATG 3 cut(s) 41, 249, 337
NlaIV GGNNCC 1 cut(s) 30
NspI RCATGY 2 cut(s) 41, 249
PciI ACATGT 1 cut(s) 37
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PscI ACATGT 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 30
PsrI GAACNNNNNNTAC 2 cut(s) 63, 95
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 2 cut(s) 58, 234
RsaNI GTAC 2 cut(s) 57, 233
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 28
ScaI AGTACT 1 cut(s) 234
SchI GAGTC 1 cut(s) 325
SduI GDGCHC 2 cut(s) 120, 300
SetI ASST 4 cut(s) 27, 136, 313, 325
Sse9I AATT 3 cut(s) 151, 392, 397
TasI AATT 3 cut(s) 151, 392, 397
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TscAI CASTG 1 cut(s) 305
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 187, 201
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 296
XapI RAATTY 1 cut(s) 151
XceI RCATGY 2 cut(s) 41, 249
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.