Rw1G009850

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
N/A
Physical Location & Seq
Forward (+)
21906342 .. 21909886
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009850.1

Sequence Viewer

Length: 747 bp
ATGGCCCCAAGCGATGTAAACCGAGACTGGACGGAACTTCTGGGCGTCATTACGGCGTCGATACTGTCATGTCTCAGAGACATTGAGTCCTTGACAGTGGCTGAGATGGTATGCAAGACGTGGCGTGAAATCTACAAAGACCCAATGCGCTTCATGTTCGGGCCGTCGTTGCTTTACGATATAGTGAAGATGTGCCGCCGCGCCATACACAGTAGCTCCAGTAGTTTTGTCTATATCAACGTCGACTACTTTTGCGACAATGAACTATTAAAGTATATCAGTAACAGTTCAGCTGGATTTATTAGACACCTCAGTTTGTTCAATTGTGGCATTATAAATGACGCAGTGTTGTGTGAAGTAGCTTTGAGACTTCCAGTTTTGGAGGAACTTGACATTTCGATATCATTCAAATTTAACAACCGGAACGGAAGAAGGTCTTCCAGGCAATATTATAGGGACAAGGATGCAGTTACTATATCAAGAACCATGCATGGTTTACTCCTCCTTGAGATCCGTAGGAATAAGCTGACTTGCAATGGCTTGGCGAAAATTCTTGATTGTTGTCCTCAACTCGAGATCCTTGATTTGCGCGAGTGTAAAAACCTGAAACTTATGAGCAGAGATTTGGAAACAAGATGTGTTGAAAAATGCAAATTTTCAGCCAAAATGATGATTGTTAAGGCATTGATAATTGCCTTAAACCTAGTACGGTTCAGGTTGATAGATTCAGTCCGTCCATTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

248

Amino Acids

28.58

Weight (kDa)

8.91

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AccI GTMKAC 1 cut(s) 243
AccII CGCG 2 cut(s) 201, 591
AciI CCGC 2 cut(s) 196, 199
AclWI GGATC 2 cut(s) 505, 571
AcsI RAATTY 3 cut(s) 410, 549, 653
AcyI GRCGYC 2 cut(s) 45, 56
AfaI GTAC 1 cut(s) 708
AfiI CCNNNNNNNGG 1 cut(s) 739
AgsI TTSAA 3 cut(s) 322, 409, 644
AhdI GACNNNNNGTC 1 cut(s) 85
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 1 cut(s) 440
AluBI AGCT 4 cut(s) 216, 293, 362, 526
AluI AGCT 4 cut(s) 216, 293, 362, 526
Alw26I GTCTC 4 cut(s) 18, 72, 77, 361
AlwI GGATC 2 cut(s) 505, 571
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 2 cut(s) 3, 161
ApoI RAATTY 3 cut(s) 410, 549, 653
Asp700I GAANNNNTTC 1 cut(s) 436
AspLEI GCGC 3 cut(s) 150, 203, 591
AspS9I GGNCC 2 cut(s) 4, 161
AvaI CYCGRG 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 429
BccI CCATC 1 cut(s) 100
BceAI ACGGC 2 cut(s) 69, 148
BciT130I CCWGG 1 cut(s) 442
BcoDI GTCTC 4 cut(s) 18, 72, 77, 361
BfaI CTAG 1 cut(s) 704
BisI GCNGC 2 cut(s) 196, 199
BlsI GCNGC 2 cut(s) 197, 200
Bme1390I CCNGG 1 cut(s) 442
BmeRI GACNNNNNGTC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 572
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 4, 161
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 454
BpiI GAAGAC 1 cut(s) 429
BpmI CTGGAG 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 527
BsaHI GRCGYC 2 cut(s) 45, 56
BsaWI WCCGGW 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 739
Bse1I ACTGG 3 cut(s) 32, 219, 374
Bse3DI GCAATG 1 cut(s) 541
BseBI CCWGG 1 cut(s) 442
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 739
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 3 cut(s) 88, 93, 325
BseNI ACTGG 3 cut(s) 32, 219, 374
BseRI GAGGAG 1 cut(s) 491
Bsh1236I CGCG 2 cut(s) 201, 591
BshFI GGCC 2 cut(s) 5, 163
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 1 cut(s) 421
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 739
BsmAI GTCTC 4 cut(s) 18, 72, 77, 361
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 2 cut(s) 5, 163
BsoBI CYCGRG 1 cut(s) 572
Bsp143I GATC 2 cut(s) 510, 576
BspACI CCGC 2 cut(s) 196, 199
BspANI GGCC 2 cut(s) 5, 163
BspCNI CTCAG 3 cut(s) 87, 94, 324
BspFNI CGCG 2 cut(s) 201, 591
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 505, 571
BsrDI GCAATG 1 cut(s) 541
BsrI ACTGG 3 cut(s) 32, 219, 374
BssMI GATC 2 cut(s) 510, 576
BssNI GRCGYC 2 cut(s) 45, 56
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 5 cut(s) 66, 97, 212, 287, 711
BstACI GRCGYC 2 cut(s) 45, 56
BstDEI CTNAG 3 cut(s) 74, 102, 311
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 2 cut(s) 201, 591
BstHHI GCGC 3 cut(s) 150, 203, 591
BstKTI GATC 2 cut(s) 513, 579
BstMAI GTCTC 4 cut(s) 18, 72, 77, 361
BstMBI GATC 2 cut(s) 510, 576
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 440
BstUI CGCG 2 cut(s) 201, 591
BstV2I GAAGAC 1 cut(s) 429
BstX2I RGATCY 2 cut(s) 510, 576
BstYI RGATCY 2 cut(s) 510, 576
BsuRI GGCC 2 cut(s) 5, 163
BtgZI GCGATG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 102, 351
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 3 cut(s) 150, 203, 591
Cfr13I GGNCC 2 cut(s) 4, 161
CseI GACGC 3 cut(s) 34, 45, 350
Csp6I GTAC 1 cut(s) 707
CviAII CATG 4 cut(s) 69, 154, 487, 491
CviJI RGCY 9 cut(s) 5, 101, 163, 216, 293, 362, 526, 540, 662
CviKI_1 RGCY 9 cut(s) 5, 101, 163, 216, 293, 362, 526, 540, 662
CviQI GTAC 1 cut(s) 707
DdeI CTNAG 3 cut(s) 74, 102, 311
DpnI GATC 2 cut(s) 512, 578
DpnII GATC 2 cut(s) 510, 576
DriI GACNNNNNGTC 1 cut(s) 85
Eam1105I GACNNNNNGTC 1 cut(s) 85
Eco32I GATATC 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 440
EcoRV GATATC 1 cut(s) 402
EcoT22I ATGCAT 1 cut(s) 492
FaeI CATG 4 cut(s) 72, 157, 490, 494
FalI AAGNNNNNCTT 2 cut(s) 421, 453
FaqI GGGAC 1 cut(s) 470
FatI CATG 4 cut(s) 68, 153, 486, 490
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 196, 199
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 2 cut(s) 196, 199
FspBI CTAG 1 cut(s) 704
GlaI GCGC 3 cut(s) 149, 202, 590
GluI GCNGC 2 cut(s) 196, 199
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 2 cut(s) 5, 163
HapII CCGG 1 cut(s) 421
HgaI GACGC 3 cut(s) 34, 45, 350
HhaI GCGC 3 cut(s) 150, 203, 591
Hin1I GRCGYC 2 cut(s) 45, 56
Hin1II CATG 4 cut(s) 72, 157, 490, 494
Hin6I GCGC 3 cut(s) 148, 201, 589
HinP1I GCGC 3 cut(s) 148, 201, 589
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 2 cut(s) 86, 725
HpaII CCGG 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 19, 244, 497
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 3 cut(s) 480, 554, 574
Hpy8I GTNNAC 3 cut(s) 19, 244, 497
Hpy99I CGWCG 3 cut(s) 61, 169, 245
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 5 cut(s) 66, 97, 212, 287, 711
HpyCH4IV ACGT 2 cut(s) 119, 240
HpyCH4V TGCA 5 cut(s) 114, 467, 490, 534, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 3 cut(s) 74, 102, 311
HpySE526I ACGT 2 cut(s) 119, 240
Hsp92I GRCGYC 2 cut(s) 45, 56
Hsp92II CATG 4 cut(s) 72, 157, 490, 494
HspAI GCGC 3 cut(s) 148, 201, 589
Kzo9I GATC 2 cut(s) 510, 576
LmnI GCTCC 1 cut(s) 221
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 704
MaeII ACGT 2 cut(s) 119, 240
MaeIII GTNAC 2 cut(s) 281, 469
MalI GATC 2 cut(s) 512, 578
MboI GATC 2 cut(s) 510, 576
MboII GAAGA 3 cut(s) 199, 429, 441
MfeI CAATTG 1 cut(s) 322
MflI RGATCY 2 cut(s) 510, 576
MluCI AATT 5 cut(s) 322, 410, 549, 653, 690
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 4 cut(s) 320, 376, 512, 576
Mph1103I ATGCAT 1 cut(s) 492
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 5 cut(s) 269, 414, 678, 698, 745
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 442
MunI CAATTG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 2 cut(s) 201, 591
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 2 cut(s) 510, 576
NlaIII CATG 4 cut(s) 72, 157, 490, 494
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 572
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 1 cut(s) 725
PkrI GCNGC 2 cut(s) 197, 200
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PsiI TTATAA 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 161
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 2 cut(s) 510, 576
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 708
RsaNI GTAC 1 cut(s) 707
SalI GTCGAC 1 cut(s) 242
SaqAI TTAA 5 cut(s) 269, 414, 678, 698, 745
SatI GCNGC 2 cut(s) 196, 199
Sau3AI GATC 2 cut(s) 510, 576
Sau96I GGNCC 2 cut(s) 4, 161
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 442
SfaNI GCATC 1 cut(s) 454
Sfr274I CTCGAG 1 cut(s) 572
SlaI CTCGAG 1 cut(s) 572
SmlI CTYRAG 2 cut(s) 506, 572
SmoI CTYRAG 2 cut(s) 506, 572
Sse9I AATT 5 cut(s) 322, 410, 549, 653, 690
SsiI CCGC 2 cut(s) 196, 199
SspI AATATT 1 cut(s) 449
SspMI CTAG 1 cut(s) 704
StyD4I CCNGG 1 cut(s) 440
TaaI ACNGT 5 cut(s) 66, 97, 212, 287, 711
TaiI ACGT 2 cut(s) 122, 243
TaqI TCGA 4 cut(s) 59, 243, 398, 573
TasI AATT 5 cut(s) 322, 410, 549, 653, 690
TauI GCSGC 2 cut(s) 198, 201
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 5 cut(s) 269, 414, 678, 698, 745
Tru9I TTAA 5 cut(s) 269, 414, 678, 698, 745
TscAI CASTG 2 cut(s) 102, 351
TspDTI ATGAA 2 cut(s) 142, 276
TspGWI ACGGA 4 cut(s) 47, 441, 503, 722
TspRI CASTG 2 cut(s) 102, 351
XapI RAATTY 3 cut(s) 410, 549, 653
XhoI CTCGAG 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 1 cut(s) 704
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.