Rw2G021360

Wall-associated receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
N/A
Physical Location & Seq
Reverse (-)
29606723 .. 29607031
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021360.1

Sequence Viewer

Length: 309 bp
ATGGGCTTAAACAGGCAAGCCCAGGGATACAAAAACAAAGCAGCAAACATAAGGCCCAAGACCAGCCTCCACAACGACGACGCCATCGAGAACGAAGTCGGACTTGCAATCTGGCCAAAACCGGAGAGGAAGAAGAGTGAAACTTGCTGCACCTGGATGATCCGACACCAGAAAAGCTCCAATCAACTACAATCCATATACAAAGGCATGAAACCCAGGACTCAAACCATCTCTGAAACGGAGAACTTCTCCTGCCAAATGATCAACCAGAAAAGCCAGTTGAAGAGAGAGGGAGGTGAGATCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

102

Amino Acids

11.72

Weight (kDa)

9.58

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 154, 295
AcoI YGGCCR 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 81
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 3 cut(s) 21, 152, 215
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
AlwI GGATC 2 cut(s) 154, 295
AoxI GGCC 2 cut(s) 53, 113
ApeKI GCWGC 2 cut(s) 41, 147
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 308
BalI TGGCCA 1 cut(s) 115
BbvI GCAGC 2 cut(s) 53, 134
BccI CCATC 2 cut(s) 92, 236
BciT130I CCWGG 3 cut(s) 23, 154, 217
BciVI GTATCC 1 cut(s) 20
BclI TGATCA 1 cut(s) 261
BfuI GTATCC 1 cut(s) 20
BisI GCNGC 2 cut(s) 42, 148
BlsI GCNGC 2 cut(s) 43, 149
Bme1390I CCNGG 3 cut(s) 23, 154, 217
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 3 cut(s) 23, 154, 217
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 21, 22, 215
BsaWI WCCGGW 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 277
BseBI CCWGG 3 cut(s) 23, 154, 217
BseDI CCNNGG 3 cut(s) 21, 22, 215
BseGI GGATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 277
BseXI GCAGC 2 cut(s) 53, 134
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 2 cut(s) 55, 115
BsiSI CCGG 1 cut(s) 122
BsnI GGCC 2 cut(s) 55, 115
Bsp143I GATC 3 cut(s) 159, 261, 300
BspANI GGCC 2 cut(s) 55, 115
BspPI GGATC 2 cut(s) 154, 295
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 3 cut(s) 21, 22, 215
BssMI GATC 3 cut(s) 159, 261, 300
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 3 cut(s) 23, 154, 217
Bst6I CTCTTC 2 cut(s) 128, 278
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 18
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 3 cut(s) 162, 264, 303
BstMBI GATC 3 cut(s) 159, 261, 300
BstNI CCWGG 3 cut(s) 23, 154, 217
BstSCI CCNGG 3 cut(s) 21, 152, 215
BstV1I GCAGC 2 cut(s) 53, 134
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BsuI GTATCC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 55, 115
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 89
CviAII CATG 1 cut(s) 208
CviJI RGCY 7 cut(s) 6, 20, 55, 66, 115, 177, 276
CviKI_1 RGCY 7 cut(s) 6, 20, 55, 66, 115, 177, 276
DpnI GATC 3 cut(s) 161, 263, 302
DpnII GATC 3 cut(s) 159, 261, 300
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 128, 278
EarI CTCTTC 2 cut(s) 128, 278
EcoRII CCWGG 3 cut(s) 21, 152, 215
FaeI CATG 1 cut(s) 211
FaiI YATR 4 cut(s) 50, 197, 199, 209
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FatI CATG 1 cut(s) 207
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 42, 148
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 2 cut(s) 42, 148
GluI GCNGC 2 cut(s) 42, 148
HaeIII GGCC 2 cut(s) 55, 115
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 211
HinfI GANTC 1 cut(s) 220
HpaII CCGG 1 cut(s) 122
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 3 cut(s) 101, 164, 235
Hpy188III TCNNGA 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 80, 83
HpyCH4V TGCA 2 cut(s) 107, 150
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 3 cut(s) 159, 261, 300
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 2 cut(s) 53, 134
MalI GATC 3 cut(s) 161, 263, 302
MboI GATC 3 cut(s) 159, 261, 300
MboII GAAGA 3 cut(s) 142, 145, 295
MflI RGATCY 1 cut(s) 300
MlsI TGGCCA 1 cut(s) 115
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 2 cut(s) 79, 187
MnlI CCTC 4 cut(s) 77, 120, 283, 287
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 155
Msp20I TGGCCA 1 cut(s) 115
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 3 cut(s) 23, 154, 217
MvaI CCWGG 3 cut(s) 23, 154, 217
NdeII GATC 3 cut(s) 159, 261, 300
NlaIII CATG 1 cut(s) 211
PasI CCCWGGG 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PkrI GCNGC 2 cut(s) 43, 149
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 21, 152, 215
PspGI CCWGG 3 cut(s) 21, 152, 215
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 2 cut(s) 42, 148
Sau3AI GATC 3 cut(s) 159, 261, 300
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 3 cut(s) 23, 154, 217
SetI ASST 3 cut(s) 155, 179, 298
SmiMI CAYNNNNRTG 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 21, 152, 215
TaqI TCGA 1 cut(s) 87
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseI GCWGC 2 cut(s) 41, 147
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.