Rw5G004370

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
N/A
Physical Location & Seq
Reverse (-)
4548771 .. 4549871
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G004370.1

Sequence Viewer

Length: 426 bp
ATGAGGAGAGCAGCATTGGATTGGCCTTGCCGTTTCAATATTATTCAGGGCGTTGCTAGAGGGGTTCTTTATCTCCATCTCGATTCCTGTTTGAAAGTAATACATAGAGATCTGAAAGCATGGAACTTATGGAATGAAGGCAGTGAATTGGCACTGGTTGATGAAGTATTGGGTGATTCATATTCCTCATCAGAAGTAATGAGATGTGTGCACATTGGGCTTCTTTGTGCACAGGACAATGTTGCGGACAGACCAACCATGGCAGATGTAGTTCTCATGCTAAGTAGTAATACAGATGGTCCCCAACCTAAGGAGCCTATATTCAATATCCTGTATTCGACCATGGCAGTAATTCATCCTCAACCACGGTATGAAAGTACTTGCTCCACAAATGACACTTGCATAACAGGGATTGAAGGACGATAG

Protein Analysis

141

Amino Acids

15.75

Weight (kDa)

5.23

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 4 cut(s) 37, 94, 325, 416
Alw21I GWGCWC 2 cut(s) 213, 232
Alw44I GTGCAC 2 cut(s) 209, 228
AoxI GGCC 1 cut(s) 23
ApaLI GTGCAC 2 cut(s) 209, 228
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 309
BaeGI GKGCMC 2 cut(s) 213, 232
Bbv12I GWGCWC 2 cut(s) 213, 232
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 84, 290
BceAI ACGGC 1 cut(s) 15
BfaI CTAG 1 cut(s) 57
BglII AGATCT 1 cut(s) 109
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmcAI AGTACT 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 301, 315
BsaJI CCNNGG 3 cut(s) 258, 342, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 258, 342, 365
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 2 cut(s) 213, 232
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 213, 232
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 213, 232
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 2 cut(s) 258, 342
BspACI CCGC 1 cut(s) 245
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 301, 315
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 3 cut(s) 258, 342, 365
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 258, 342
Bst4CI ACNGT 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 281, 309
BstDSI CCRYGG 3 cut(s) 258, 342, 365
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstSLI GKGCMC 2 cut(s) 213, 232
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 309
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 3 cut(s) 258, 342, 365
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 148, 152
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 378
CviAII CATG 4 cut(s) 120, 259, 277, 343
CviJI RGCY 3 cut(s) 25, 220, 316
CviKI_1 RGCY 3 cut(s) 25, 220, 316
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 2 cut(s) 281, 309
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 258, 342
Eco47I GGWCC 1 cut(s) 299
Eco81I CCTNAGG 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 258, 342
ErhI CCWWGG 2 cut(s) 258, 342
FaeI CATG 4 cut(s) 123, 262, 280, 346
FaqI GGGAC 1 cut(s) 285
FatI CATG 4 cut(s) 119, 258, 276, 342
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 4 cut(s) 123, 262, 280, 346
HinfI GANTC 2 cut(s) 83, 176
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 211, 230
Hpy188I TCNGA 2 cut(s) 114, 193
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 211, 230
HpyAV CCTTC 2 cut(s) 131, 410
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 3 cut(s) 211, 230, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 2 cut(s) 281, 309
Hsp92II CATG 4 cut(s) 123, 262, 280, 346
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 313, 389
LpnPI CCDG 6 cut(s) 32, 100, 140, 218, 344, 393
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 1 cut(s) 57
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 213, 232
MluCI AATT 2 cut(s) 146, 351
MnlI CCTC 3 cut(s) 53, 196, 369
MwoI GCNNNNNNNGC 1 cut(s) 217
NcoI CCATGG 2 cut(s) 258, 342
NdeII GATC 1 cut(s) 109
NlaIII CATG 4 cut(s) 123, 262, 280, 346
NlaIV GGNNCC 2 cut(s) 301, 315
PfeI GAWTC 2 cut(s) 83, 176
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 301, 315
PspPI GGNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 299
ScaI AGTACT 1 cut(s) 379
SduI GDGCHC 2 cut(s) 213, 232
SetI ASST 1 cut(s) 310
SinI GGWCC 1 cut(s) 299
Sse9I AATT 2 cut(s) 146, 351
SsiI CCGC 1 cut(s) 245
SspI AATATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 57
StyI CCWWGG 2 cut(s) 258, 342
TaaI ACNGT 1 cut(s) 369
TaqI TCGA 2 cut(s) 81, 338
TasI AATT 2 cut(s) 146, 351
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 2 cut(s) 83, 176
TscAI CASTG 2 cut(s) 148, 159
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 5 cut(s) 150, 168, 177, 344, 387
TspRI CASTG 2 cut(s) 148, 159
VneI GTGCAC 2 cut(s) 209, 228
VpaK11BI GGWCC 1 cut(s) 299
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.