Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14371850 .. 14376155

Gene Structure 4306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACCGCATTGACATTATTGTCAATTGCTCACAATGCATTCTCTGGGCCCATTCCCAAGGAGCTTGGAAACCTCAAGGACTTAAATATGCTGTCCTTTGGAATAAATAACTTCTCCGGAACACTCCCTCCCGAACTTGGTAATTTGGTCAAGCTTCAACAACTTTACATAAACAGCTGCGGACTCGGTGGTGAAATTCCTTCAACATTTGCTAACCTCCGCAATATGCAAGTCCTATGGGCATCAGACAATCCCTTCTCAGGAAGGATACCTGATTTCATTGGGAATTGGACAAAGATAAACTCTCTGCGATTTCAAGGGAACTCTTTTAGAGGTCCAATACCGACCAGTTTTTCTCAACTAACTGCCTTGAATTCTCTGCGAATCAGTGATATCTACAAAGTAAGCTCCTCTCTTGATTTCATTAAGAATTTGAAGAACTTGACTGATTTAGCGCTACGAAATGCATTAATTACTGGTAGCATCCCTTCTGATATTGGAGAATACCAAAATTTACAGATACTGGATTTGAGTTTCAACAATTTAACAGGTCAACTTCCAGGTGGCTTGTTCAACATGAGTTCTCTAACATACTTATTTCTTGGAAACAATAGCTTGCAGGGAGCTCTTCCTAGCCAAAAGAGTGATATTCTTCACACTATAGATTTGTCTTACAACTATTTATCAGGAAGTCTTCCCCCATGGGTAACCTCAATGTCACAGCTGAACTTAGTGGTGAACAACTTCACATTGGACAGTTCAAACATAAAATGCAAAATTCTCAATCAACTGTGGTGGACTAGAACTGAGAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

272

Amino Acids

30.04

Weight (kDa)

7.74

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	20 - 129	9.6e-10	Leucine-rich repeat region
LRR_14	PF23598	119 - 204	2.1e-07	Leucine-rich repeat region
LRR_8	PF13855	171 - 228	9.3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	3 cut(s)	6, 180, 220
AcsI	RAATTY	5 cut(s)	195, 373, 430, 511, 777
AfeI	AGCGCT	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	137, 260
AgsI	TTSAA	8 cut(s)	158, 204, 317, 373, 436, 538, 574, 762
AjnI	CCWGG	1 cut(s)	559
AloI	GAACNNNNNNTCC	2 cut(s)	112, 144
AluBI	AGCT	7 cut(s)	64, 154, 177, 408, 615, 626, 724
AluI	AGCT	7 cut(s)	64, 154, 177, 408, 615, 626, 724
Alw21I	GWGCWC	1 cut(s)	628
AlwNI	CAGNNNCTG	1 cut(s)	523
Aor13HI	TCCGGA	1 cut(s)	116
Aor51HI	AGCGCT	1 cut(s)	456
AoxI	GGCC	1 cut(s)	47
ApaI	GGGCCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	5 cut(s)	195, 373, 430, 511, 777
AseI	ATTAAT	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	3 cut(s)	47, 48, 335
AsuHPI	GGTGA	2 cut(s)	203, 748
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	51
BanII	GRGCYC	2 cut(s)	51, 628
BarI	GAAGNNNNNNTAC	2 cut(s)	472, 504
BbsI	GAAGAC	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	561
BciVI	GTATCC	1 cut(s)	261
BfaI	CTAG	2 cut(s)	633, 801
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	261
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	47, 48, 335
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	2 cut(s)	251, 492
BpiI	GAAGAC	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	57, 701
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 260
Bse1I	ACTGG	3 cut(s)	348, 481, 528
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	57, 701
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	137, 260
BseMII	CTCAG	2 cut(s)	273, 798
BseNI	ACTGG	3 cut(s)	348, 481, 528
BseRI	GAGGAG	1 cut(s)	400
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	137, 260
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	49
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	51, 628
Bsp13I	TCCGGA	1 cut(s)	116
Bsp19I	CCATGG	1 cut(s)	701
BspACI	CCGC	3 cut(s)	6, 180, 220
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	272, 799
BspEI	TCCGGA	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	633
BsrI	ACTGG	3 cut(s)	348, 481, 528
BssECI	CCNNGG	2 cut(s)	57, 701
BssT1I	CCWWGG	2 cut(s)	57, 701
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	758, 792
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	3 cut(s)	259, 730, 807
BstDSI	CCRYGG	1 cut(s)	701
BstEII	GGTNACC	1 cut(s)	706
BstF5I	GGATG	1 cut(s)	483
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	561
BstPI	GGTNACC	1 cut(s)	706
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	686
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	701
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	617
CaiI	CAGNNNCTG	1 cut(s)	523
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	3 cut(s)	47, 48, 335
CspCI	CAANNNNNGTGG	2 cut(s)	776, 811
CviAII	CATG	2 cut(s)	577, 702
DdeI	CTNAG	3 cut(s)	259, 730, 807
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	626
Eco130I	CCWWGG	2 cut(s)	57, 701
Eco24I	GRGCYC	2 cut(s)	51, 628
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	335
Eco47III	AGCGCT	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	626
Eco91I	GGTNACC	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	559
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	2 cut(s)	57, 701
EcoT22I	ATGCAT	2 cut(s)	40, 469
EcoT38I	GRGCYC	2 cut(s)	51, 628
ErhI	CCWWGG	2 cut(s)	57, 701
FaeI	CATG	2 cut(s)	580, 705
FaiI	YATR	9 cut(s)	89, 170, 227, 238, 578, 592, 662, 703, 767
FatI	CATG	2 cut(s)	576, 701
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	2 cut(s)	51, 628
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	2 cut(s)	633, 801
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	580, 705
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	554
HindII	GTYRAC	1 cut(s)	554
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	183, 384
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	203, 748
Hpy166II	GTNNAC	3 cut(s)	554, 739, 798
Hpy188I	TCNGA	2 cut(s)	247, 493
Hpy188III	TCNNGA	5 cut(s)	117, 131, 261, 416, 687
Hpy8I	GTNNAC	3 cut(s)	554, 739, 798
HpyAV	CCTTC	4 cut(s)	210, 258, 265, 498
HpyCH4III	ACNGT	2 cut(s)	758, 792
HpyCH4V	TGCA	5 cut(s)	38, 229, 467, 619, 774
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	3 cut(s)	259, 730, 807
Hsp92II	CATG	2 cut(s)	580, 705
HspAI	GCGC	1 cut(s)	455
Kpn2I	TCCGGA	1 cut(s)	116
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	3 cut(s)	61, 413, 623
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	2 cut(s)	251, 492
MaeI	CTAG	2 cut(s)	633, 801
MaeIII	GTNAC	2 cut(s)	706, 717
MboII	GAAGA	4 cut(s)	448, 620, 644, 686
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	2 cut(s)	51, 628
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	7 cut(s)	83, 138, 227, 326, 421, 721, 804
Mph1103I	ATGCAT	2 cut(s)	40, 469
MroI	TCCGGA	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	743
MseI	TTAA	4 cut(s)	83, 426, 470, 545
MspA1I	CMGCKG	2 cut(s)	177, 724
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	561
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	35
NcoI	CCATGG	1 cut(s)	701
NlaIII	CATG	2 cut(s)	580, 705
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	717
NsiI	ATGCAT	2 cut(s)	40, 469
PciSI	GCTCTTC	1 cut(s)	633
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PshBI	ATTAAT	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	559
PspEI	GGTNACC	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	49
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	3 cut(s)	47, 48, 335
PstNI	CAGNNNCTG	1 cut(s)	523
PvuII	CAGCTG	2 cut(s)	177, 724
SacI	GAGCTC	1 cut(s)	628
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	4 cut(s)	83, 426, 470, 545
SatI	GCNGC	1 cut(s)	178
Sau96I	GGNCC	3 cut(s)	47, 48, 335
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	2 cut(s)	51, 628
SfaNI	GCATC	2 cut(s)	251, 492
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SsiI	CCGC	3 cut(s)	6, 180, 220
SspMI	CTAG	2 cut(s)	633, 801
SstI	GAGCTC	1 cut(s)	628
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	2 cut(s)	57, 701
TaaI	ACNGT	2 cut(s)	758, 792
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	4 cut(s)	83, 426, 470, 545
Tru9I	TTAA	4 cut(s)	83, 426, 470, 545
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	717
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	717
TspDTI	ATGAA	2 cut(s)	268, 412
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	470
XapI	RAATTY	5 cut(s)	195, 373, 430, 511, 777
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	2 cut(s)	633, 801
Zsp2I	ATGCAT	2 cut(s)	40, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.