Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

83123762 .. 83126010

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G047950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAATGCTTTTTACTCTATGGCTGCTTATGCTTCTGCTACCAATTTATGTGCTTGCACAAACTAATGGTAGCATAGCAGTCGGTGCTTCTCTCTCTACAGCAGATGGGAATCTTGTGTTCACTGCTAAGAAACCTTTTCATTCAACTGCAACTACCACTGGGACTATTCCAGGTAGTGAAGGTCGACAACTGGTCTTCAATGAGTCGGGCAACTTCTATATTCTGCGAGTGAATGGTGGACATTTCACTTTCACAGATGAGGAACGTTCAGCAAGGGACTACTATCTTCGTACAACTCTCAGCTTTGATGGGGTTTTGGCTCAATATTTCCTCCCAAAGACTTCCAATGGCAATGAAAGCTGGGCTGCTCTTTGGTCAGATCCGCCTAATATTTGCCAAAAAATTAAGATGAATTCGGGTCCTGGTATTTGTGGTTACAACAGTATCTGCACTCTCAAAGCAGATAGGAGGCCATCCTGTGAATGCCTAACAGGATACTCTTTACTTAATCCAGCAGATGCATACGGGAACTGTTATCCAGATTCCAAACAAGGCTGTGAAGATGAGCTTAGTTATACAAAAGATCTATATGATGTTCAGAACATACTTCTGGATGATCATTACAATGCTTGGATCTTAAATTTTGGCTTGTCGAAACTTCTGATGATGAATGAGAGCCAGACATATACTGTCATTAGAGGAACTAAAGGGAGAAGTGTTGATACGGATAATACCAGCGAAGAGAAAGCAATTTTAACCGACTGGGTTTATAATTGTTACCAAGACGGACTTTTAGATGAGGTTCTAAATCACCAAGTCAATGCCTTGGATGACAAGACTGAGCTGGAAAAGACAGTGATGATTGCTATGTGGTGTATCCAAGAAGACCGATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

300

Amino Acids

33.62

Weight (kDa)

4.71

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	81 - 168	9.2e-06	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
AccI	GTMKAC	1 cut(s)	187
AciI	CCGC	1 cut(s)	386
AclI	AACGTT	1 cut(s)	268
AclWI	GGATC	2 cut(s)	377, 644
AcsI	RAATTY	2 cut(s)	415, 643
AfaI	GTAC	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	147, 202
AhdI	GACNNNNNGTC	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	172, 424
AluBI	AGCT	4 cut(s)	306, 363, 571, 847
AluI	AGCT	4 cut(s)	306, 363, 571, 847
AlwI	GGATC	2 cut(s)	377, 644
AlwNI	CAGNNNCTG	1 cut(s)	450
AoxI	GGCC	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	25, 368
ApoI	RAATTY	2 cut(s)	415, 643
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	806
AvaII	GGWCC	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	430, 463
BarI	GAAGNNNNNNTAC	2 cut(s)	709, 741
BbsI	GAAGAC	2 cut(s)	190, 894
BbvI	GCAGC	2 cut(s)	12, 355
BccI	CCATC	3 cut(s)	101, 305, 484
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	2 cut(s)	174, 426
BciVI	GTATCC	2 cut(s)	491, 890
BclI	TGATCA	1 cut(s)	619
BfmI	CTRYAG	1 cut(s)	99
BfuI	GTATCC	2 cut(s)	491, 890
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	2 cut(s)	26, 369
BlsI	GCNGC	2 cut(s)	27, 370
Bme1390I	CCNGG	2 cut(s)	174, 426
Bme18I	GGWCC	1 cut(s)	422
BmeRI	GACNNNNNGTC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	2 cut(s)	174, 426
BmrI	ACTGGG	2 cut(s)	171, 775
BmsI	GCATC	1 cut(s)	511
BmuI	ACTGGG	2 cut(s)	171, 775
BpiI	GAAGAC	2 cut(s)	190, 894
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	828
Bse1I	ACTGG	3 cut(s)	166, 198, 770
Bse3DI	GCAATG	2 cut(s)	12, 361
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	174, 426
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	3 cut(s)	476, 622, 838
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	2 cut(s)	12, 361
BseMII	CTCAG	2 cut(s)	316, 834
BseNI	ACTGG	3 cut(s)	166, 198, 770
BseXI	GCAGC	2 cut(s)	12, 355
BseYI	CCCAGC	1 cut(s)	363
BsgI	GTGCAG	1 cut(s)	436
BshFI	GGCC	1 cut(s)	475
BslFI	GGGAC	2 cut(s)	178, 293
BsmFI	GGGAC	2 cut(s)	178, 293
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	382, 586, 619, 636
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	2 cut(s)	315, 835
BspLI	GGNNCC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	377, 644
BsrDI	GCAATG	2 cut(s)	12, 361
BsrI	ACTGG	3 cut(s)	166, 198, 770
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	4 cut(s)	382, 586, 619, 636
BssT1I	CCWWGG	1 cut(s)	828
Bst2UI	CCWGG	2 cut(s)	174, 426
Bst4CI	ACNGT	4 cut(s)	446, 536, 694, 859
Bst6I	CTCTTC	1 cut(s)	738
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	4 cut(s)	129, 302, 572, 843
BstF5I	GGATG	3 cut(s)	476, 622, 838
BstKTI	GATC	4 cut(s)	385, 589, 622, 639
BstMBI	GATC	4 cut(s)	382, 586, 619, 636
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 86, 360
BstNI	CCWGG	2 cut(s)	174, 426
BstSCI	CCNGG	2 cut(s)	172, 424
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	12, 355
BstV2I	GAAGAC	2 cut(s)	190, 894
BstX2I	RGATCY	3 cut(s)	382, 586, 636
BstYI	RGATCY	3 cut(s)	382, 586, 636
BsuI	GTATCC	2 cut(s)	491, 890
BsuRI	GGCC	1 cut(s)	475
BtsCI	GGATG	3 cut(s)	476, 622, 838
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	123, 159, 864
Cac8I	GCNNGC	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	294
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	4 cut(s)	129, 302, 572, 843
DpnI	GATC	4 cut(s)	384, 588, 621, 638
DpnII	GATC	4 cut(s)	382, 586, 619, 636
DriI	GACNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	738
Eam1105I	GACNNNNNGTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	738
EciI	GGCGGA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	172, 424
EcoT14I	CCWWGG	1 cut(s)	828
EcoT22I	ATGCAT	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	828
FalI	AAGNNNNNCTT	4 cut(s)	555, 587, 777, 809
FaqI	GGGAC	2 cut(s)	178, 293
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	26, 369
FokI	GGATG	3 cut(s)	463, 629, 845
Fsp4HI	GCNGC	2 cut(s)	26, 369
GluI	GCNGC	2 cut(s)	26, 369
GsaI	CCCAGC	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	475
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HinfI	GANTC	3 cut(s)	112, 206, 545
HphI	GGTGA	1 cut(s)	806
Hpy166II	GTNNAC	3 cut(s)	123, 188, 242
Hpy188I	TCNGA	3 cut(s)	382, 603, 666
Hpy188III	TCNNGA	2 cut(s)	542, 614
Hpy8I	GTNNAC	3 cut(s)	123, 188, 242
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	4 cut(s)	446, 536, 694, 859
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	59, 152, 453, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 86, 360
HpyF3I	CTNAG	4 cut(s)	129, 302, 572, 843
HpySE526I	ACGT	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	382, 586, 619, 636
Lsp1109I	GCAGC	2 cut(s)	12, 355
LweI	GCATC	1 cut(s)	511
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	2 cut(s)	437, 779
MalI	GATC	4 cut(s)	384, 588, 621, 638
MboI	GATC	4 cut(s)	382, 586, 619, 636
MboII	GAAGA	5 cut(s)	190, 281, 575, 755, 899
MflI	RGATCY	3 cut(s)	382, 586, 636
MluCI	AATT	6 cut(s)	45, 405, 415, 643, 753, 775
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	256, 344, 465, 695, 796
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	4 cut(s)	408, 510, 641, 758
MslI	CAYNNNNRTG	1 cut(s)	627
MspR9I	CCNGG	2 cut(s)	174, 426
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	2 cut(s)	174, 426
MwoI	GCNNNNNNNGC	3 cut(s)	31, 86, 360
NdeII	GATC	4 cut(s)	382, 586, 619, 636
NlaIV	GGNNCC	1 cut(s)	423
NsiI	ATGCAT	1 cut(s)	526
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	112, 545
PkrI	GCNGC	2 cut(s)	27, 370
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	774
Psp1406I	AACGTT	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	172, 424
PspFI	CCCAGC	1 cut(s)	363
PspGI	CCWGG	2 cut(s)	172, 424
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	422
PspPPI	RGGWCCY	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	450
PsuI	RGATCY	3 cut(s)	382, 586, 636
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	627
SalI	GTCGAC	1 cut(s)	186
SaqAI	TTAA	4 cut(s)	408, 510, 641, 758
SatI	GCNGC	2 cut(s)	26, 369
Sau3AI	GATC	4 cut(s)	382, 586, 619, 636
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	174, 426
SetI	ASST	9 cut(s)	139, 178, 187, 271, 308, 365, 573, 807, 849
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	627
Sse9I	AATT	6 cut(s)	45, 405, 415, 643, 753, 775
SsiI	CCGC	1 cut(s)	386
SspI	AATATT	2 cut(s)	329, 394
StyD4I	CCNGG	2 cut(s)	172, 424
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	4 cut(s)	446, 536, 694, 859
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	187, 656
TasI	AATT	6 cut(s)	45, 405, 415, 643, 753, 775
TfiI	GAWTC	2 cut(s)	112, 545
Tru1I	TTAA	4 cut(s)	408, 510, 641, 758
Tru9I	TTAA	4 cut(s)	408, 510, 641, 758
TscAI	CASTG	3 cut(s)	130, 166, 864
TseI	GCWGC	2 cut(s)	25, 368
TspDTI	ATGAA	4 cut(s)	131, 372, 428, 686
TspGWI	ACGGA	2 cut(s)	743, 804
TspRI	CASTG	3 cut(s)	130, 166, 864
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	2 cut(s)	415, 643
XmiI	GTMKAC	1 cut(s)	187
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.