Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

32122549 .. 32125468

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATTAACAGAGGCGACGCCTCAGTTACAAAAATAATAATTACTCGCATTAATGACGAGATGACAGGCGTGATGAAGAGACGCTGCCGCCAGGCAAGTCATCGCGACATTGCCGGCCACTTATCATTAGCGGAGGGACTTCCGCCAGTCCTGCTGACACCAACTCATCTAAGTATAGTAATGGAATATACTGAAGAAGGAGAACTATATGAGAGAATTTACAAGATGGCAAGGTTTTTCTTCCAGCAATTGATATCAAGACTTAAGTATTATCATACAATGGTAAAAAGTGATTCTTCTTGCAACATATATGTCATAGATCTTAAGCTTGAAAATTCACTGTTAGATGGCGGCACAACACCTTGTGTGAAAATATGCAATTTCAGAGACTCAATGCCAAAATCTGTTGTGGAAACACCTAATTATATTACACCTGAAGTCCTATATAGAAACAAAATATGGTGGAAAGGAAAATGTCTGGTCTTTGGGGCATATCCCTTTGAAGATCCTCAGGACCATTTAAACTTTACAAAAACCATTCGGCGAATTAGTGTACACTACTCAATCCCACAAAATATTGGAGTTTCCGGGAAATGTAGACATCTGTTTTCTAAAATATTTGTGGCAAACCCAGAGCAGAGAATAACAATCCCTGAAATTAAGAGCCATCCTTGGTTTGTAAAGAATTTACCTATAGAAATGATGGAAGGAGGAAGTTGGGAAAGCAATGAGGTGAACAATCCATCCCAAAGTGCAAGAAGACCTTTAAAGATCCCAATTGTCAGTAGGCATCTCGTTGGAAGCAGCGTGGCTATTGATGATACTTATGTTGGAGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

280

Amino Acids

32.03

Weight (kDa)

9.05

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	52 - 226	1.5e-16	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	598
AccII	CGCG	1 cut(s)	105
AciI	CCGC	4 cut(s)	88, 131, 143, 351
AclWI	GGATC	2 cut(s)	500, 766
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	3 cut(s)	216, 334, 685
AcuI	CTGAAG	2 cut(s)	213, 456
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	555
AflII	CTTAAG	2 cut(s)	263, 323
AgsI	TTSAA	2 cut(s)	332, 503
AjnI	CCWGG	1 cut(s)	90
AloI	GAACNNNNNNTCC	2 cut(s)	728, 760
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	73, 381
AlwI	GGATC	2 cut(s)	500, 766
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	84, 804
ApoI	RAATTY	3 cut(s)	216, 334, 685
AseI	ATTAAT	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	514
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	514
AxyI	CCTNAGG	1 cut(s)	510
BaeI	ACNNNNGTAYC	1 cut(s)	813
BbsI	GAAGAC	1 cut(s)	766
BbvI	GCAGC	2 cut(s)	71, 816
BccI	CCATC	5 cut(s)	220, 341, 675, 697, 751
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	2 cut(s)	73, 381
BfmI	CTRYAG	1 cut(s)	693
BfrI	CTTAAG	2 cut(s)	263, 323
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	4 cut(s)	85, 88, 352, 805
BlsI	GCNGC	4 cut(s)	86, 89, 353, 806
Bme1390I	CCNGG	2 cut(s)	92, 589
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	92, 589
BmsI	GCATC	1 cut(s)	799
BpiI	GAAGAC	1 cut(s)	766
BpuMI	CCSGG	1 cut(s)	589
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	671
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	146
Bse21I	CCTNAGG	1 cut(s)	510
Bse3DI	GCAATG	2 cut(s)	108, 733
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	671
BseGI	GGATG	2 cut(s)	667, 743
BseMI	GCAATG	2 cut(s)	108, 733
BseMII	CTCAG	2 cut(s)	36, 524
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	71, 816
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	114, 588
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	2 cut(s)	73, 381
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	553
Bsp143I	GATC	3 cut(s)	319, 505, 771
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	4 cut(s)	88, 131, 143, 351
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	2 cut(s)	35, 523
BspFNI	CGCG	1 cut(s)	105
BspPI	GGATC	2 cut(s)	500, 766
BspTI	CTTAAG	2 cut(s)	263, 323
BsrDI	GCAATG	2 cut(s)	108, 733
BsrFI	RCCGGY	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	671
BssMI	GATC	3 cut(s)	319, 505, 771
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	18
BstAFI	CTTAAG	2 cut(s)	263, 323
BstAUI	TGTACA	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	3 cut(s)	22, 170, 510
BstF5I	GGATG	2 cut(s)	667, 743
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	322, 508, 774
BstMAI	GTCTC	2 cut(s)	73, 381
BstMBI	GATC	3 cut(s)	319, 505, 771
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	90, 587
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	71, 816
BstV2I	GAAGAC	1 cut(s)	766
BstX2I	RGATCY	3 cut(s)	319, 505, 771
BstYI	RGATCY	3 cut(s)	319, 505, 771
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	667, 743
BtsIMutI	CAGTG	1 cut(s)	338
BtuMI	TCGCGA	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	514
CseI	GACGC	2 cut(s)	26, 90
Csp6I	GTAC	1 cut(s)	554
CviJI	RGCY	4 cut(s)	117, 328, 666, 812
CviKI_1	RGCY	4 cut(s)	117, 328, 666, 812
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	3 cut(s)	22, 170, 510
DpnI	GATC	3 cut(s)	321, 507, 773
DpnII	GATC	3 cut(s)	319, 505, 771
DraI	TTTAAA	2 cut(s)	522, 768
DraIII	CACNNNGTG	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	671
Eco32I	GATATC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	213, 456
Eco81I	CCTNAGG	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
Esp3I	CGTCTC	1 cut(s)	73
FalI	AAGNNNNNCTT	4 cut(s)	280, 312, 748, 780
FaqI	GGGAC	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	85, 88, 352, 805
FokI	GGATG	2 cut(s)	654, 730
Fsp4HI	GCNGC	4 cut(s)	85, 88, 352, 805
GluI	GCNGC	4 cut(s)	85, 88, 352, 805
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	2 cut(s)	114, 588
HgaI	GACGC	2 cut(s)	26, 90
Hin1I	GRCGYC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	293, 389
HpaII	CCGG	2 cut(s)	114, 588
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	4 cut(s)	554, 556, 599, 736
Hpy188I	TCNGA	1 cut(s)	386
Hpy188III	TCNNGA	3 cut(s)	104, 258, 512
Hpy8I	GTNNAC	4 cut(s)	554, 556, 599, 736
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	191, 701
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	303, 378, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	22, 170, 510
Hsp92I	GRCGYC	1 cut(s)	18
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	319, 505, 771
Lsp1109I	GCAGC	2 cut(s)	71, 816
LweI	GCATC	1 cut(s)	799
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	321, 507, 773
MboI	GATC	3 cut(s)	319, 505, 771
MboII	GAAGA	6 cut(s)	88, 206, 232, 288, 515, 771
MfeI	CAATTG	2 cut(s)	248, 777
MflI	RGATCY	3 cut(s)	319, 505, 771
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	2 cut(s)	778, 811
MnlI	CCTC	7 cut(s)	5, 31, 127, 519, 704, 724, 827
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	8 cut(s)	6, 51, 264, 324, 521, 660, 767, 841
MspCI	CTTAAG	2 cut(s)	263, 323
MspI	CCGG	2 cut(s)	114, 588
MspR9I	CCNGG	2 cut(s)	92, 589
MunI	CAATTG	2 cut(s)	248, 777
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	151
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	319, 505, 771
NgoMIV	GCCGGC	1 cut(s)	113
NruI	TCGCGA	1 cut(s)	105
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	86, 89, 353, 806
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PshBI	ATTAAT	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	514
PsuI	RGATCY	3 cut(s)	319, 505, 771
RruI	TCGCGA	1 cut(s)	105
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
SaqAI	TTAA	8 cut(s)	6, 51, 264, 324, 521, 660, 767, 841
SatI	GCNGC	4 cut(s)	85, 88, 352, 805
Sau3AI	GATC	3 cut(s)	319, 505, 771
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	92, 589
SetI	ASST	9 cut(s)	236, 330, 364, 421, 436, 694, 735, 766, 838
SfaNI	GCATC	1 cut(s)	799
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	514
SmlI	CTYRAG	2 cut(s)	263, 323
SmoI	CTYRAG	2 cut(s)	263, 323
SsiI	CCGC	4 cut(s)	88, 131, 143, 351
SspI	AATATT	2 cut(s)	577, 618
StyD4I	CCNGG	2 cut(s)	90, 587
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	1 cut(s)	342
TatI	WGTACW	1 cut(s)	553
TauI	GCSGC	2 cut(s)	90, 354
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	8 cut(s)	6, 51, 264, 324, 521, 660, 767, 841
Tru9I	TTAA	8 cut(s)	6, 51, 264, 324, 521, 660, 767, 841
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	2 cut(s)	84, 804
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	345
Vha464I	CTTAAG	2 cut(s)	263, 323
VpaK11BI	GGWCC	1 cut(s)	514
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	3 cut(s)	216, 334, 685
XmiI	GTMKAC	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.