Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023702

Physical Location & Seq

Genomic Coordinates Reverse (-)

642505 .. 644903

Gene Structure 2399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAAGAAGAACTTGTATTTTAGGTATAAGCCGGATGTTATCAAAGGAGATATGGATTCTATACGTCGTGACGTCCTCGACTTTTATATAAACTTGGGAACTAAGGTTATAGATGAATCTCATGATCAAGACACCACAGATCTTGATAAATGCATTTTGTATATCCGTCACTCTACTTTGAATCAAGAGACTTCCGGACTCCAGATTCTTGCCACTGGAGCACTTGGAGGAAGATTTGATCATGAAGCCGGTAATCTCAACGTCTTATATCGATATCCAGATACAAGGATAGTCCTTTTATCTGACGATTGCCTCATCCAACTCCTTCCAAAGACTCATCGACATGAAATACATATTCAGTCTTCTCTAGAAGGGCCTCACTGTGGACTCATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTCAATGGGATCTCAGCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCCAACTTGGTTAAAGAAGAGAAAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGACTTTCCATACAAGACCATACACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004788 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042357 GO:0042723 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

TPK_B1_binding TPK_catalytic

Protein Analysis

197

Amino Acids

22.17

Weight (kDa)

5.71

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPK_catalytic	PF04263	7 - 97	5e-25	Thiamin pyrophosphokinase, catalytic domain
TPK_B1_binding	PF04265	114 - 180	2.1e-23	Thiamin pyrophosphokinase, vitamin B1 binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0023702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02880 AT1G02880 AT1G02880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	194
AclWI	GGATC	2 cut(s)	450, 540
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	181, 437
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	450, 540
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	223
BccI	CCATC	2 cut(s)	415, 560
BclI	TGATCA	2 cut(s)	124, 238
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	368
BglII	AGATCT	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	2 cut(s)	185, 237
Bsa29I	ATCGAT	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	220
Bse21I	CCTNAGG	1 cut(s)	427
Bse8I	GATNNNNATC	1 cut(s)	531
BseAI	TCCGGA	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	271
BseGI	GGATG	3 cut(s)	40, 315, 485
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	3 cut(s)	441, 447, 460
BseNI	ACTGG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	32, 195, 249
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	194
Bsp143I	GATC	5 cut(s)	124, 139, 238, 442, 532
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	3 cut(s)	440, 448, 459
BspDI	ATCGAT	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	194
BspHI	TCATGA	2 cut(s)	121, 241
BspPI	GGATC	2 cut(s)	450, 540
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	5 cut(s)	124, 139, 238, 442, 532
BssNI	GRCGYC	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	383, 517
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	72
BstDEI	CTNAG	5 cut(s)	102, 427, 446, 456, 591
BstF5I	GGATG	3 cut(s)	40, 315, 485
BstKTI	GATC	5 cut(s)	127, 142, 241, 445, 535
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	5 cut(s)	124, 139, 238, 442, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	3 cut(s)	139, 442, 532
BstYI	RGATCY	3 cut(s)	139, 442, 532
Bsu15I	ATCGAT	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	376
BsuTUI	ATCGAT	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	40, 315, 485
BtsIMutI	CAGTG	3 cut(s)	213, 379, 453
CciI	TCATGA	2 cut(s)	121, 241
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	374
ClaI	ATCGAT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	483
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	3 cut(s)	122, 242, 344
CviJI	RGCY	4 cut(s)	31, 248, 376, 433
CviKI_1	RGCY	4 cut(s)	31, 248, 376, 433
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	5 cut(s)	102, 427, 446, 456, 591
DpnI	GATC	5 cut(s)	126, 141, 240, 444, 534
DpnII	GATC	5 cut(s)	124, 139, 238, 442, 532
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco32I	GATATC	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	427
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRV	GATATC	1 cut(s)	275
EcoT22I	ATGCAT	1 cut(s)	155
FaeI	CATG	3 cut(s)	125, 245, 347
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	3 cut(s)	121, 241, 343
FbaI	TGATCA	2 cut(s)	124, 238
FokI	GGATG	3 cut(s)	47, 302, 472
FspBI	CTAG	1 cut(s)	368
GsuI	CTGGAG	2 cut(s)	185, 237
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	3 cut(s)	32, 195, 249
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	125, 245, 347
HinfI	GANTC	9 cut(s)	56, 116, 181, 198, 205, 334, 387, 521, 527
HpaII	CCGG	3 cut(s)	32, 195, 249
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	3 cut(s)	304, 526, 532
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	335, 365
HpyCH4III	ACNGT	2 cut(s)	383, 517
HpyCH4IV	ACGT	3 cut(s)	64, 72, 261
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	5 cut(s)	102, 427, 446, 456, 591
HpySE526I	ACGT	3 cut(s)	64, 72, 261
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	125, 245, 347
Kpn2I	TCCGGA	1 cut(s)	194
Ksp22I	TGATCA	2 cut(s)	124, 238
Kzo9I	GATC	5 cut(s)	124, 139, 238, 442, 532
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	45, 201, 208, 215, 262, 291, 414, 526, 549
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	3 cut(s)	64, 72, 261
MaeIII	GTNAC	2 cut(s)	68, 167
MalI	GATC	5 cut(s)	126, 141, 240, 444, 534
MboI	GATC	5 cut(s)	124, 139, 238, 442, 532
MboII	GAAGA	6 cut(s)	16, 19, 243, 354, 515, 527
MflI	RGATCY	3 cut(s)	139, 442, 532
MhlI	GDGCHC	1 cut(s)	223
MlyI	GAGTC	3 cut(s)	192, 328, 381
MmeI	TCCRAC	2 cut(s)	343, 513
MnlI	CCTC	5 cut(s)	86, 221, 323, 387, 436
Mph1103I	ATGCAT	1 cut(s)	155
MroI	TCCGGA	1 cut(s)	194
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	342, 458
MspI	CCGG	3 cut(s)	32, 195, 249
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	5 cut(s)	124, 139, 238, 442, 532
NlaIII	CATG	3 cut(s)	125, 245, 347
NmuCI	GTSAC	2 cut(s)	68, 167
NsiI	ATGCAT	1 cut(s)	155
PagI	TCATGA	2 cut(s)	121, 241
PfeI	GAWTC	6 cut(s)	56, 116, 181, 205, 521, 527
PleI	GAGTC	3 cut(s)	192, 328, 381
PpsI	GAGTC	3 cut(s)	192, 328, 381
PspPI	GGNCC	1 cut(s)	374
PsuI	RGATCY	3 cut(s)	139, 442, 532
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
RseI	CAYNNNNRTG	2 cut(s)	342, 458
SaqAI	TTAA	1 cut(s)	498
Sau3AI	GATC	5 cut(s)	124, 139, 238, 442, 532
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	3 cut(s)	192, 328, 381
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	7 cut(s)	26, 67, 75, 108, 264, 428, 592
SmiMI	CAYNNNNRTG	2 cut(s)	342, 458
SspMI	CTAG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	383, 517
TaiI	ACGT	3 cut(s)	67, 75, 264
TaqI	TCGA	4 cut(s)	78, 271, 340, 519
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	6 cut(s)	56, 116, 181, 205, 521, 527
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	3 cut(s)	220, 386, 460
TseFI	GTSAC	2 cut(s)	68, 167
Tsp45I	GTSAC	2 cut(s)	68, 167
TspDTI	ATGAA	4 cut(s)	17, 129, 258, 360
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	3 cut(s)	220, 386, 460
XbaI	TCTAGA	1 cut(s)	367
XspI	CTAG	1 cut(s)	368
ZraI	GACGTC	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.