AT1G13910

Leucine Rich repeats (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0026909
Physical Location & Seq
Forward (+)
4755777 .. 4758076
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13910.2

Sequence Viewer

Length: 993 bp
ATGGCGAATTTGAGTTTGAGCTTGTATCTAATCCTCCGGATTTACGCTCTTTTGTTGCTGTTCAATGTCTCCTTCGCTAAAACACTTAAACGAGACATGAAAGCTTTGAATGAGATAAAGAAATTGGTGGGATGGAGATTGGTATACTCTTGGGTTGGAGATGATCCTTGTGGCGATGGAGTTTTGCCTCCGTGGTCTGGAGTTACTTGCTCTAAAGTTGGCGATTATCGTGTCGTCGTCAAGCTAGAAGTGTATTCAATGTCGATAGTTGGGAATTTCCCAAAGGCTATAACGAAGCTCTTAGATCTCACTGTTTTGGATATGCATAATAACAAATTAACAGGTCCTATTCCTCCAGAAATTGGGCGGCTTAAGCGGCTTATCACACTGAATTTGAGGTGGAACAAACTTCAACAGGCACTGCCTCCTGAAATTGGTGGATTGAAGAGTCTAACTTATCTGTACCTGAGTTTTAACAATTTCAAAGGAGAAATCCCCAAAGAACTTGCAAATCTCCATGAGCTCCAGTACTTACATATTCAGGAGAATCATTTTACTGGGCGAATTCCAGCAGAGCTGGGAACATTACAAAAACTTCGCCACTTGGATGCTGGCAACAATAACTTAGTGGGGAGTATAAGCGATCTTTTTCGCATTGAAGGATGCTTTCCAGCTCTTAGAAACCTGTTTTTAAACAATAATTACTTGACTGGAGGACTCCCAAACAAGCTTGCAAATCTAACAAACCTGGAGATCTTGTACTTATCTTTCAACAAAATGACTGGAGCAATACCCGCTGCACTTGCCAGTATACCAAGACTAACTAACTTGCACTTGGACCACAATCTATTCAATGGAAGTATACCTGAAGCCTTCTACAAGCATCCAAACCTAAAAGATATGTACATAGAAGGGAATGCTTTCAAATCAGACGTGAAGGCGATTGGTGCACATAAGGTCCTCGAACTTTCTGACACAGACTTCCTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

330

Amino Acids

37.02

Weight (kDa)

9.14

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 94 - 204 2e-14 Leucine-rich repeat region
LRR_8 PF13855 103 - 161 9.8e-07 Leucine rich repeat
LRR_8 PF13855 224 - 283 1.3e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13910 AT1G13910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AccI GTMKAC 3 cut(s) 144, 811, 862
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 3 cut(s) 367, 376, 795
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 4 cut(s) 7, 274, 391, 564
AcuI CTGAAG 1 cut(s) 888
AfaI GTAC 4 cut(s) 464, 530, 761, 905
AfiI CCNNNNNNNGG 3 cut(s) 197, 362, 434
AflII CTTAAG 1 cut(s) 371
AjiI CACGTC 1 cut(s) 934
AjnI CCWGG 1 cut(s) 747
AluBI AGCT 8 cut(s) 21, 104, 244, 298, 523, 577, 674, 730
AluI AGCT 8 cut(s) 21, 104, 244, 298, 523, 577, 674, 730
Alw21I GWGCWC 2 cut(s) 525, 952
Alw26I GTCTC 2 cut(s) 73, 87
Alw44I GTGCAC 1 cut(s) 948
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 421
Aor13HI TCCGGA 1 cut(s) 36
ApaLI GTGCAC 1 cut(s) 948
ApeKI GCWGC 1 cut(s) 797
ApoI RAATTY 4 cut(s) 7, 274, 391, 564
Asp700I GAANNNNTTC 1 cut(s) 920
AspS9I GGNCC 3 cut(s) 344, 838, 958
AvaII GGWCC 3 cut(s) 344, 838, 958
BaeGI GKGCMC 1 cut(s) 952
BanII GRGCYC 1 cut(s) 525
Bbv12I GWGCWC 2 cut(s) 525, 952
BbvI GCAGC 1 cut(s) 784
BccI CCATC 2 cut(s) 126, 170
BciT130I CCWGG 1 cut(s) 749
BcoDI GTCTC 2 cut(s) 73, 87
BfaI CTAG 1 cut(s) 245
BfrI CTTAAG 1 cut(s) 371
BglII AGATCT 2 cut(s) 304, 753
BisI GCNGC 3 cut(s) 368, 377, 798
BlsI GCNGC 3 cut(s) 369, 378, 799
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 1 cut(s) 749
Bme18I GGWCC 3 cut(s) 344, 838, 958
BmgBI CACGTC 1 cut(s) 934
BmgT120I GGNCC 3 cut(s) 344, 838, 958
BmrFI CCNGG 1 cut(s) 749
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 3 cut(s) 598, 653, 892
BmuI ACTGGG 1 cut(s) 567
BpmI CTGGAG 6 cut(s) 219, 339, 509, 732, 770, 804
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 362, 434
Bse1I ACTGG 5 cut(s) 526, 562, 715, 787, 807
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 1 cut(s) 749
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 4 cut(s) 137, 613, 668, 883
BseLI CCNNNNNNNGG 3 cut(s) 197, 362, 434
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 5 cut(s) 526, 562, 715, 787, 807
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 1 cut(s) 784
BseYI CCCAGC 1 cut(s) 577
BsgI GTGCAG 1 cut(s) 783
BsiHKAI GWGCWC 2 cut(s) 525, 952
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 3 cut(s) 197, 362, 434
BsmAI GTCTC 2 cut(s) 73, 87
BsmI GAATGC 1 cut(s) 922
Bsp1286I GDGCHC 2 cut(s) 525, 952
Bsp13I TCCGGA 1 cut(s) 36
Bsp1407I TGTACA 1 cut(s) 903
Bsp143I GATC 4 cut(s) 163, 304, 643, 753
BspACI CCGC 3 cut(s) 367, 376, 795
BspCNI CTCAG 1 cut(s) 459
BspEI TCCGGA 1 cut(s) 36
BspPI GGATC 1 cut(s) 158
BspTI CTTAAG 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 903
BsrI ACTGG 5 cut(s) 526, 562, 715, 787, 807
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 4 cut(s) 163, 304, 643, 753
BssNAI GTATAC 3 cut(s) 145, 812, 863
Bst1107I GTATAC 3 cut(s) 145, 812, 863
Bst2UI CCWGG 1 cut(s) 749
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 440
BstAFI CTTAAG 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 903
BstC8I GCNNGC 2 cut(s) 613, 732
BstDEI CTNAG 4 cut(s) 301, 467, 625, 677
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 4 cut(s) 137, 613, 668, 883
BstKTI GATC 4 cut(s) 166, 307, 646, 756
BstMAI GTCTC 2 cut(s) 73, 87
BstMBI GATC 4 cut(s) 163, 304, 643, 753
BstMWI GCNNNNNNNGC 5 cut(s) 373, 376, 794, 803, 947
BstNI CCWGG 1 cut(s) 749
BstSCI CCNGG 1 cut(s) 747
BstSLI GKGCMC 1 cut(s) 952
BstV1I GCAGC 1 cut(s) 784
BstX2I RGATCY 2 cut(s) 304, 753
BstYI RGATCY 2 cut(s) 304, 753
BstZ17I GTATAC 3 cut(s) 145, 812, 863
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 189
BtrI CACGTC 1 cut(s) 934
BtsCI GGATG 4 cut(s) 137, 613, 668, 883
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 3 cut(s) 309, 386, 419
Cac8I GCNNGC 2 cut(s) 613, 732
CaiI CAGNNNCTG 1 cut(s) 421
Cfr13I GGNCC 3 cut(s) 344, 838, 958
Csp6I GTAC 4 cut(s) 463, 529, 760, 904
CviAII CATG 2 cut(s) 97, 518
CviQI GTAC 4 cut(s) 463, 529, 760, 904
DdeI CTNAG 4 cut(s) 301, 467, 625, 677
DpnI GATC 4 cut(s) 165, 306, 645, 755
DpnII GATC 4 cut(s) 163, 304, 643, 753
DraI TTTAAA 1 cut(s) 693
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Ecl136II GAGCTC 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 525
Eco47I GGWCC 3 cut(s) 344, 838, 958
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 888
EcoICRI GAGCTC 1 cut(s) 523
EcoO109I RGGNCCY 2 cut(s) 344, 958
EcoRI GAATTC 1 cut(s) 564
EcoRII CCWGG 1 cut(s) 747
EcoT22I ATGCAT 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 525
FaeI CATG 2 cut(s) 100, 521
FatI CATG 2 cut(s) 96, 517
FauI CCCGC 1 cut(s) 802
FblI GTMKAC 3 cut(s) 144, 811, 862
Fnu4HI GCNGC 3 cut(s) 368, 377, 798
FokI GGATG 4 cut(s) 144, 620, 675, 870
FriOI GRGCYC 1 cut(s) 525
Fsp4HI GCNGC 3 cut(s) 368, 377, 798
FspBI CTAG 1 cut(s) 245
GluI GCNGC 3 cut(s) 368, 377, 798
GsaI CCCAGC 1 cut(s) 581
GsuI CTGGAG 6 cut(s) 219, 339, 509, 732, 770, 804
HapII CCGG 1 cut(s) 37
Hin1II CATG 2 cut(s) 100, 521
HindIII AAGCTT 2 cut(s) 102, 728
HinfI GANTC 3 cut(s) 448, 547, 717
HpaII CCGG 1 cut(s) 37
Hpy166II GTNNAC 4 cut(s) 145, 812, 863, 950
Hpy188I TCNGA 2 cut(s) 931, 973
Hpy188III TCNNGA 5 cut(s) 37, 198, 356, 428, 542
Hpy8I GTNNAC 4 cut(s) 145, 812, 863, 950
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 5 cut(s) 82, 653, 883, 905, 931
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 933
HpyCH4V TGCA 6 cut(s) 325, 509, 734, 800, 832, 950
HpyF10VI GCNNNNNNNGC 5 cut(s) 373, 376, 794, 803, 947
HpyF3I CTNAG 4 cut(s) 301, 467, 625, 677
HpySE526I ACGT 1 cut(s) 933
Hsp92II CATG 2 cut(s) 100, 521
Kpn2I TCCGGA 1 cut(s) 36
Kzo9I GATC 4 cut(s) 163, 304, 643, 753
LmnI GCTCC 2 cut(s) 528, 785
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 3 cut(s) 598, 653, 892
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 933
MaeIII GTNAC 1 cut(s) 202
MalI GATC 4 cut(s) 165, 306, 645, 755
MboI GATC 4 cut(s) 163, 304, 643, 753
MboII GAAGA 1 cut(s) 457
MflI RGATCY 2 cut(s) 304, 753
MhlI GDGCHC 2 cut(s) 525, 952
MlyI GAGTC 2 cut(s) 457, 711
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 7 cut(s) 44, 198, 363, 390, 435, 707, 971
Mph1103I ATGCAT 1 cut(s) 327
MroI TCCGGA 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 5 cut(s) 87, 338, 372, 474, 692
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 797
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 749
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 1 cut(s) 749
MwoI GCNNNNNNNGC 5 cut(s) 373, 376, 794, 803, 947
NdeII GATC 4 cut(s) 163, 304, 643, 753
NlaIII CATG 2 cut(s) 100, 521
NsiI ATGCAT 1 cut(s) 327
PctI GAATGC 1 cut(s) 922
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 1 cut(s) 547
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 3 cut(s) 369, 378, 799
PleI GAGTC 2 cut(s) 456, 711
PpsI GAGTC 2 cut(s) 456, 711
PpuMI RGGWCCY 2 cut(s) 344, 958
Psp124BI GAGCTC 1 cut(s) 525
Psp5II RGGWCCY 2 cut(s) 344, 958
Psp6I CCWGG 1 cut(s) 747
PspFI CCCAGC 1 cut(s) 577
PspGI CCWGG 1 cut(s) 747
PspPI GGNCC 3 cut(s) 344, 838, 958
PspPPI RGGWCCY 2 cut(s) 344, 958
PstNI CAGNNNCTG 1 cut(s) 421
PsuI RGATCY 2 cut(s) 304, 753
RsaI GTAC 4 cut(s) 464, 530, 761, 905
RsaNI GTAC 4 cut(s) 463, 529, 760, 904
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 1 cut(s) 525
SaqAI TTAA 5 cut(s) 87, 338, 372, 474, 692
SatI GCNGC 3 cut(s) 368, 377, 798
Sau3AI GATC 4 cut(s) 163, 304, 643, 753
Sau96I GGNCC 3 cut(s) 344, 838, 958
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 2 cut(s) 457, 711
ScrFI CCNGG 1 cut(s) 749
SduI GDGCHC 2 cut(s) 525, 952
SfaNI GCATC 3 cut(s) 598, 653, 892
SinI GGWCC 3 cut(s) 344, 838, 958
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SsiI CCGC 3 cut(s) 367, 376, 795
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 747
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 936
TaqI TCGA 2 cut(s) 263, 963
TatI WGTACW 3 cut(s) 528, 759, 903
TauI GCSGC 2 cut(s) 370, 379
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 5 cut(s) 87, 338, 372, 474, 692
Tru9I TTAA 5 cut(s) 87, 338, 372, 474, 692
TscAI CASTG 3 cut(s) 316, 393, 426
TseI GCWGC 1 cut(s) 797
TspDTI ATGAA 1 cut(s) 113
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 3 cut(s) 316, 393, 426
Van91I CCANNNNNTGG 1 cut(s) 362
Vha464I CTTAAG 1 cut(s) 371
VneI GTGCAC 1 cut(s) 948
VpaK11BI GGWCC 3 cut(s) 344, 838, 958
XapI RAATTY 4 cut(s) 7, 274, 391, 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmiI GTMKAC 3 cut(s) 144, 811, 862
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 1 cut(s) 245
ZrmI AGTACT 1 cut(s) 530
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.