AT1G17540

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0021912
Physical Location & Seq
Reverse (-)
6029138 .. 6032860
3723 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17540.1

Sequence Viewer

Length: 2187 bp
ATGGCTGCAAGAAGACTCAAAGGAAAAGACAGCAAAGCAGTTACCGCCATAGCCATTGATAAAGATAAGAACAGCCAACACGCTTTGAAATGGGCTGTTGAGAATATCATCATCGATTCTCCAAACTGTATCCTTCTCCATGTTCAAACCAAACTGAGATTTGGGGCAGGAGAAAACACAGAAGCACCACATGACAACCAAGAAGAGGCGCATCAGTTCTTCCTTCCCTTTAGAGGATTCTGTGCTCGGAAAGGGATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATTGTTGACTACATCACCAACAATTCCATTTCAAATATAGTCATTGGAGCCTCTGCTCGAAATTCTTTCCTCAAGAAGTTTAAGAGCGTAGATGTGCCAACGACTCTGCTTAAAACAACACCAGATACATGTGCTGTCTTCATTGTGTCTAAAGGGAAGCTCTTAACAAGCAGATCAGCGAGTCGGCCTCAGACACCTCAAGGTCCTCACACGCCTCAAGGTCCTCAGACACCTCAAGCTCCTCAACACCCTCCTCATCCTTCAAAACATCCCTCAATGATGTCTGATCCTGGCCCAACAAGTTCCACTTCCAGTGAATCCGGAAGGTCATCTCCTGCATTGAACGGAGAATTATCTCCACCTACACCTCATTACAAGCCATCTTTGTATAGGAGTTCTATGTCAGAGCTTAGTAATGAATTTCCCAGCGATCACAGTGCTGAATCAAATGCTAGCTTCTACAGCATCCTAGGACGATCCACATATGGAGGAAGCTCACACTCTTCCATGTCTGAGATAACTGATGGAGAGGAAAGCTTATCTGGGGGCAATATCACTGAACACCAGAATCAAAATCTTGAAGCAGAAGTGAGAAGATTGAGATTCGAATTGCAGCAGTTTAATGCTTCCATGTCCAGAGAAAGTGCCCCTCATCTTCTAGGACCTAGAGCTACCGCCGAAACTGAAAGGCTGGAGGAAGCAAAGGCAGCAAGAGAGATGCTTAGGGCATTGTCTGAGATGGACAAGCAAAAAACACAGACTGCGATCCAAGCAACTGAAGTGGCACAACGTCTAGCGGAAATAGAGACCCAGAAGAGACGACTTGTGGAGATGCAAGCCAGGTTCAAGGAACAGAATATGGCCGATAGTATTTCCTACAGACGATATAGCATCAGAGATGTTGAAGGTGCTACCGACGGTTTTTCAGATGCTCTAAAGATTGGGGAAGGAGGGTATGGACCTGTGTATAAAGCCGTTCTTGAAAACACTTCTGTTGCCATCAAACTCTTGAAGTCAGATGTCTCACAAGGCCTGAAGCAGTTTAACCAAGAGATCGAGGTTCTAAGTTGCATGAGGCACCCTAACATGGTGATCCTCCTCGGTGCTTGTCCCGAATATGGCTGCCTGGTGTATGAGTACATGGAAAATGGAACATTAGAAGATCGTCTCTTTTGCAAAGATAATACTCCACCACTATCTTGGAGAGCACGGTTCAGAATCGCTGCTGAGATTGCTACAGGACTTCTTTTCCTTCATCAGGCCAAACCCGAGCCGCTAGTACATCGAGATCTGAAGCCAGCAAACATTCTGATAGACAGACATTTCACTAGCAAAATCAGTGACGTTGGTTTAGCTCGGTTGGTACCTGCAGCTGTTGCTGATAGCTTCTCCAACTATCACATGACTGCTGCAGCCGGTACATTTTGTTACATCGACCCCGAGTACCAGCAAACGGGAATGCTTGGGGTGAAGTCTGACTTGTACTCATTTGGTGTGGTGCTTCTGCAAATCATCACAGCGATGCCAGCAATGGGTTTAAGCCATAGAGTAGAGAAAGCAATTGAGAAGAAGAAACTCCGAGAAGTTTTGGATCCAAAAATATCAGACTGGCCTGAAGAAGAGACAATGGTGCTAGCTCAATTGGCTTTGCAGTGCTGCGAGCTGCGGAAAAAGGACAGACCTGATCTTGCTTCCGTTCTGTTGCCTGCACTGAGCAAGCTAAGAGAGTTTGCAACAGAGGATCATGAAGTACATAACTCTGATAGAACATTTCATGTGTCACGTGCTCACAATTTGGTTCCTCTTTCCCCAATATCTTCCTGTCAGACAGAGGATGATGCTTGGGAAAATCCTATTGACAGAAAGATTGGAACTTCGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

728

Amino Acids

80.57

Weight (kDa)

6.34

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 17 - 128 1.5e-06 Universal stress protein family
Pkinase PF00069 413 - 667 2.7e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 414 - 667 5.9e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17540 AT1G72760 AT1G72760 AT1G72760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1678
Acc65I GGTACC 1 cut(s) 1666
AccB1I GGYRCC 2 cut(s) 1380, 1666
AccIII TCCGGA 1 cut(s) 623
AciI CCGC 5 cut(s) 45, 978, 1100, 1577, 1969
AclWI GGATC 7 cut(s) 584, 774, 1063, 1390, 1889, 1902, 2052
AcoI YGGCCR 1 cut(s) 1164
AcsI RAATTY 2 cut(s) 364, 722
AcuI CTGAAG 4 cut(s) 1101, 1358, 1616, 1938
AcvI CACGTG 1 cut(s) 2087
AfaI GTAC 7 cut(s) 1442, 1584, 1668, 1723, 1748, 1787, 2055
AfiI CCNNNNNNNGG 7 cut(s) 205, 233, 1390, 1421, 1561, 1756, 1835
AflIII ACRYGT 1 cut(s) 431
AjnI CCWGG 3 cut(s) 592, 1142, 1428
Alw21I GWGCWC 3 cut(s) 247, 1513, 2092
Alw26I GTCTC 5 cut(s) 1103, 1114, 1330, 1475, 1919
AlwI GGATC 7 cut(s) 584, 774, 1063, 1390, 1889, 1902, 2052
Ama87I CYCGRG 3 cut(s) 295, 1571, 1742
Aor13HI TCCGGA 1 cut(s) 623
AoxI GGCC 6 cut(s) 488, 595, 1164, 1333, 1563, 1913
ApoI RAATTY 2 cut(s) 364, 722
Asp718I GGTACC 1 cut(s) 1666
AspA2I CCTAGG 1 cut(s) 772
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 5 cut(s) 506, 524, 596, 965, 1262
AsuHPI GGTGA 3 cut(s) 310, 1405, 1783
AsuII TTCGAA 1 cut(s) 909
AsuNHI GCTAGC 2 cut(s) 755, 1936
AvaI CYCGRG 3 cut(s) 295, 1571, 1742
AvaII GGWCC 4 cut(s) 506, 524, 965, 1262
AvrII CCTAGG 1 cut(s) 772
BaeGI GKGCMC 1 cut(s) 952
BamHI GGATCC 1 cut(s) 1894
BanI GGYRCC 2 cut(s) 1380, 1666
BbrPI CACGTG 1 cut(s) 2087
BbsI GAAGAC 2 cut(s) 19, 433
Bbv12I GWGCWC 3 cut(s) 247, 1513, 2092
BbvI GCAGC 9 cut(s) 928, 1022, 1412, 1513, 1685, 1699, 1727, 1946, 1953
BccI CCATC 4 cut(s) 691, 821, 1036, 1310
BceAI ACGGC 1 cut(s) 1262
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 3 cut(s) 594, 1144, 1430
BciVI GTATCC 1 cut(s) 140
BcoDI GTCTC 5 cut(s) 1103, 1114, 1330, 1475, 1919
BfaI CTAG 8 cut(s) 756, 773, 962, 969, 1097, 1580, 1632, 1937
BfmI CTRYAG 5 cut(s) 763, 1180, 1539, 1671, 1713
BfuAI ACCTGC 1 cut(s) 1678
BfuI GTATCC 1 cut(s) 140
BglII AGATCT 1 cut(s) 1591
BlnI CCTAGG 1 cut(s) 772
Bme1390I CCNGG 3 cut(s) 594, 1144, 1430
Bme18I GGWCC 4 cut(s) 506, 524, 965, 1262
BmeT110I CYCGRG 3 cut(s) 295, 1571, 1742
BmgT120I GGNCC 5 cut(s) 506, 524, 596, 965, 1262
BmiI GGNNCC 5 cut(s) 352, 1382, 1668, 1896, 2103
BmrFI CCNGG 3 cut(s) 594, 1144, 1430
BmsI GCATC 8 cut(s) 220, 777, 1011, 1125, 1203, 1222, 1815, 2131
BmtI GCTAGC 2 cut(s) 759, 1940
BpiI GAAGAC 2 cut(s) 19, 433
BplI GAGNNNNNCTC 2 cut(s) 475, 507
BpmI CTGGAG 1 cut(s) 1016
Bpu10I CCTNAGC 1 cut(s) 1025
Bpu14I TTCGAA 1 cut(s) 909
BpuEI CTTGAG 4 cut(s) 359, 486, 504, 522
Bsa29I ATCGAT 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 2087
BsaI GGTCTC 1 cut(s) 1103
BsaJI CCNNGG 2 cut(s) 772, 1402
BsaWI WCCGGW 1 cut(s) 623
Bsc4I CCNNNNNNNGG 7 cut(s) 205, 233, 1390, 1421, 1561, 1756, 1835
Bse118I RCCGGY 1 cut(s) 1718
Bse1I ACTGG 2 cut(s) 615, 1916
Bse3DI GCAATG 1 cut(s) 1839
BseAI TCCGGA 1 cut(s) 623
BseBI CCWGG 3 cut(s) 594, 1144, 1430
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 772, 1402
BseGI GGATG 4 cut(s) 559, 571, 768, 2143
BseLI CCNNNNNNNGG 7 cut(s) 205, 233, 1390, 1421, 1561, 1756, 1835
BseMI GCAATG 1 cut(s) 1839
BseMII CTCAG 7 cut(s) 146, 506, 542, 807, 1029, 1521, 2006
BseNI ACTGG 2 cut(s) 615, 1916
BseRI GAGGAG 3 cut(s) 534, 546, 1391
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 9 cut(s) 928, 1022, 1412, 1513, 1685, 1699, 1727, 1946, 1953
BseYI CCCAGC 1 cut(s) 728
BsgI GTGCAG 1 cut(s) 1995
BshFI GGCC 6 cut(s) 490, 597, 1166, 1335, 1565, 1915
BshNI GGYRCC 2 cut(s) 1380, 1666
BshVI ATCGAT 1 cut(s) 114
BsiHKAI GWGCWC 3 cut(s) 247, 1513, 2092
BsiHKCI CYCGRG 3 cut(s) 295, 1571, 1742
BsiSI CCGG 2 cut(s) 624, 1719
BslFI GGGAC 1 cut(s) 1398
BslI CCNNNNNNNGG 7 cut(s) 205, 233, 1390, 1421, 1561, 1756, 1835
BsmAI GTCTC 5 cut(s) 1103, 1114, 1330, 1475, 1919
BsmBI CGTCTC 2 cut(s) 1114, 1475
BsmFI GGGAC 1 cut(s) 1398
BsmI GAATGC 1 cut(s) 1767
BsnI GGCC 6 cut(s) 490, 597, 1166, 1335, 1565, 1915
Bso31I GGTCTC 1 cut(s) 1103
BsoBI CYCGRG 3 cut(s) 295, 1571, 1742
Bsp119I TTCGAA 1 cut(s) 909
Bsp1286I GDGCHC 4 cut(s) 247, 952, 1513, 2092
Bsp13I TCCGGA 1 cut(s) 623
BspACI CCGC 5 cut(s) 45, 978, 1100, 1577, 1969
BspANI GGCC 6 cut(s) 490, 597, 1166, 1335, 1565, 1915
BspCNI CTCAG 7 cut(s) 147, 505, 541, 808, 1030, 1522, 2007
BspDI ATCGAT 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 623
BspHI TCATGA 1 cut(s) 2047
BspLI GGNNCC 5 cut(s) 352, 1382, 1668, 1896, 2103
BspMAI CTGCAG 2 cut(s) 1675, 1717
BspMI ACCTGC 1 cut(s) 1678
BspOI GCTAGC 2 cut(s) 759, 1940
BspPI GGATC 7 cut(s) 584, 774, 1063, 1390, 1889, 1902, 2052
BspT104I TTCGAA 1 cut(s) 909
BspT107I GGYRCC 2 cut(s) 1380, 1666
BspTNI GGTCTC 1 cut(s) 1103
BsrDI GCAATG 1 cut(s) 1839
BsrFI RCCGGY 1 cut(s) 1718
BsrI ACTGG 2 cut(s) 615, 1916
BssAI RCCGGY 1 cut(s) 1718
BssECI CCNNGG 2 cut(s) 772, 1402
BssT1I CCWWGG 1 cut(s) 772
Bst2UI CCWGG 3 cut(s) 594, 1144, 1430
Bst4CI ACNGT 4 cut(s) 128, 740, 1223, 1515
Bst6I CTCTTC 4 cut(s) 198, 811, 1112, 1917
BstAPI GCANNNNNTGC 1 cut(s) 1679
BstBAI YACGTR 1 cut(s) 2087
BstBI TTCGAA 1 cut(s) 909
BstC8I GCNNGC 8 cut(s) 757, 1140, 1602, 1830, 1938, 1964, 2010, 2021
BstENI CCTNNNNNAGG 1 cut(s) 1559
BstF5I GGATG 4 cut(s) 559, 571, 768, 2143
BstHHI GCGC 1 cut(s) 211
BstMAI GTCTC 5 cut(s) 1103, 1114, 1330, 1475, 1919
BstMWI GCNNNNNNNGC 8 cut(s) 44, 765, 1010, 1073, 1535, 1679, 1829, 1946
BstNI CCWGG 3 cut(s) 594, 1144, 1430
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 3 cut(s) 592, 1142, 1428
BstSFI CTRYAG 5 cut(s) 763, 1180, 1539, 1671, 1713
BstSLI GKGCMC 1 cut(s) 952
BstV1I GCAGC 9 cut(s) 928, 1022, 1412, 1513, 1685, 1699, 1727, 1946, 1953
BstV2I GAAGAC 2 cut(s) 19, 433
BstX2I RGATCY 2 cut(s) 1591, 1894
BstXI CCANNNNNNTGG 1 cut(s) 1503
BstYI RGATCY 2 cut(s) 1591, 1894
Bsu15I ATCGAT 1 cut(s) 114
BsuI GTATCC 1 cut(s) 140
BsuRI GGCC 6 cut(s) 490, 597, 1166, 1335, 1565, 1915
BsuTUI ATCGAT 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 1838
BtsCI GGATG 4 cut(s) 559, 571, 768, 2143
BtsI GCAGTG 1 cut(s) 1961
BtsIMutI CAGTG 6 cut(s) 622, 745, 858, 1648, 1961, 2012
BveI ACCTGC 1 cut(s) 1678
Cac8I GCNNGC 8 cut(s) 757, 1140, 1602, 1830, 1938, 1964, 2010, 2021
CciI TCATGA 1 cut(s) 2047
CfoI GCGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 1718
Cfr13I GGNCC 5 cut(s) 506, 524, 596, 965, 1262
ClaI ATCGAT 1 cut(s) 114
Csp6I GTAC 7 cut(s) 1441, 1583, 1667, 1722, 1747, 1786, 2054
CspCI CAANNNNNGTGG 2 cut(s) 1065, 1100
CviQI GTAC 7 cut(s) 1441, 1583, 1667, 1722, 1747, 1786, 2054
EaeI YGGCCR 1 cut(s) 1164
Eam1104I CTCTTC 4 cut(s) 198, 811, 1112, 1917
EarI CTCTTC 4 cut(s) 198, 811, 1112, 1917
Eco130I CCWWGG 1 cut(s) 772
Eco147I AGGCCT 1 cut(s) 1335
Eco31I GGTCTC 1 cut(s) 1103
Eco47I GGWCC 4 cut(s) 506, 524, 965, 1262
Eco57I CTGAAG 4 cut(s) 1101, 1358, 1616, 1938
Eco72I CACGTG 1 cut(s) 2087
Eco88I CYCGRG 3 cut(s) 295, 1571, 1742
EcoNI CCTNNNNNAGG 1 cut(s) 1559
EcoO109I RGGNCCY 3 cut(s) 506, 524, 965
EcoRII CCWGG 3 cut(s) 592, 1142, 1428
EcoT14I CCWWGG 1 cut(s) 772
ErhI CCWWGG 1 cut(s) 772
Esp3I CGTCTC 2 cut(s) 1114, 1475
FalI AAGNNNNNCTT 6 cut(s) 595, 627, 1266, 1298, 1766, 1798
FaqI GGGAC 1 cut(s) 1398
FauNDI CATATG 1 cut(s) 787
FokI GGATG 4 cut(s) 546, 558, 755, 2150
FspBI CTAG 8 cut(s) 756, 773, 962, 969, 1097, 1580, 1632, 1937
GlaI GCGC 1 cut(s) 210
GsaI CCCAGC 1 cut(s) 732
GsuI CTGGAG 1 cut(s) 1016
HaeIII GGCC 6 cut(s) 490, 597, 1166, 1335, 1565, 1915
HapII CCGG 2 cut(s) 624, 1719
HhaI GCGC 1 cut(s) 211
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 838
HpaII CCGG 2 cut(s) 624, 1719
HphI GGTGA 3 cut(s) 310, 1405, 1783
Hpy166II GTNNAC 1 cut(s) 310
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 2 cut(s) 1223, 2185
HpyAV CCTTC 7 cut(s) 143, 233, 573, 621, 1202, 1244, 1565
HpyCH4III ACNGT 4 cut(s) 128, 740, 1223, 1515
HpyCH4IV ACGT 4 cut(s) 1093, 1647, 2086, 2183
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 765, 1010, 1073, 1535, 1679, 1829, 1946
HpySE526I ACGT 4 cut(s) 1093, 1647, 2086, 2183
HspAI GCGC 1 cut(s) 209
Kpn2I TCCGGA 1 cut(s) 623
KpnI GGTACC 1 cut(s) 1670
LmnI GCTCC 2 cut(s) 350, 547
Lsp1109I GCAGC 9 cut(s) 928, 1022, 1412, 1513, 1685, 1699, 1727, 1946, 1953
LweI GCATC 8 cut(s) 220, 777, 1011, 1125, 1203, 1222, 1815, 2131
MaeI CTAG 8 cut(s) 756, 773, 962, 969, 1097, 1580, 1632, 1937
MaeII ACGT 4 cut(s) 1093, 1647, 2086, 2183
MaeIII GTNAC 4 cut(s) 40, 1643, 1730, 2082
MfeI CAATTG 3 cut(s) 303, 1863, 1943
MflI RGATCY 2 cut(s) 1591, 1894
MhlI GDGCHC 4 cut(s) 247, 952, 1513, 2092
MluCI AATT 9 cut(s) 303, 325, 364, 653, 722, 911, 1863, 1943, 2095
MlyI GAGTC 3 cut(s) 9, 400, 493
MmeI TCCRAC 1 cut(s) 1719
MroI TCCGGA 1 cut(s) 623
MseI TTAA 6 cut(s) 384, 414, 467, 924, 1347, 1841
MslI CAYNNNNRTG 1 cut(s) 1823
MspA1I CMGCKG 1 cut(s) 1676
MspI CCGG 2 cut(s) 624, 1719
MspR9I CCNGG 3 cut(s) 594, 1144, 1430
MunI CAATTG 3 cut(s) 303, 1863, 1943
Mva1269I GAATGC 1 cut(s) 1767
MvaI CCWGG 3 cut(s) 594, 1144, 1430
MwoI GCNNNNNNNGC 8 cut(s) 44, 765, 1010, 1073, 1535, 1679, 1829, 1946
NdeI CATATG 1 cut(s) 787
NheI GCTAGC 2 cut(s) 755, 1936
NlaIV GGNNCC 5 cut(s) 352, 1382, 1668, 1896, 2103
NmuCI GTSAC 2 cut(s) 1643, 2082
NspI RCATGY 1 cut(s) 435
NspV TTCGAA 1 cut(s) 909
PaeR7I CTCGAG 1 cut(s) 295
PagI TCATGA 1 cut(s) 2047
PceI AGGCCT 1 cut(s) 1335
PciI ACATGT 1 cut(s) 431
PctI GAATGC 1 cut(s) 1767
PfeI GAWTC 7 cut(s) 116, 237, 620, 746, 871, 906, 1521
PleI GAGTC 3 cut(s) 9, 400, 492
PmaCI CACGTG 1 cut(s) 2087
PmlI CACGTG 1 cut(s) 2087
PpsI GAGTC 3 cut(s) 9, 400, 492
Ppu21I YACGTR 1 cut(s) 2087
PpuMI RGGWCCY 3 cut(s) 506, 524, 965
PscI ACATGT 1 cut(s) 431
Psp5II RGGWCCY 3 cut(s) 506, 524, 965
Psp6I CCWGG 3 cut(s) 592, 1142, 1428
PspCI CACGTG 1 cut(s) 2087
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 3 cut(s) 592, 1142, 1428
PspN4I GGNNCC 5 cut(s) 352, 1382, 1668, 1896, 2103
PspPI GGNCC 5 cut(s) 506, 524, 596, 965, 1262
PspPPI RGGWCCY 3 cut(s) 506, 524, 965
PstI CTGCAG 2 cut(s) 1675, 1717
PsuI RGATCY 2 cut(s) 1591, 1894
PvuII CAGCTG 1 cut(s) 1676
RsaI GTAC 7 cut(s) 1442, 1584, 1668, 1723, 1748, 1787, 2055
RsaNI GTAC 7 cut(s) 1441, 1583, 1667, 1722, 1747, 1786, 2054
RseI CAYNNNNRTG 1 cut(s) 1823
SaqAI TTAA 6 cut(s) 384, 414, 467, 924, 1347, 1841
Sau96I GGNCC 5 cut(s) 506, 524, 596, 965, 1262
SchI GAGTC 3 cut(s) 9, 400, 493
ScrFI CCNGG 3 cut(s) 594, 1144, 1430
SduI GDGCHC 4 cut(s) 247, 952, 1513, 2092
SfaNI GCATC 8 cut(s) 220, 777, 1011, 1125, 1203, 1222, 1815, 2131
SfcI CTRYAG 5 cut(s) 763, 1180, 1539, 1671, 1713
Sfr274I CTCGAG 1 cut(s) 295
SfuI TTCGAA 1 cut(s) 909
SinI GGWCC 4 cut(s) 506, 524, 965, 1262
SlaI CTCGAG 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 1823
SmlI CTYRAG 5 cut(s) 295, 374, 501, 519, 537
SmoI CTYRAG 5 cut(s) 295, 374, 501, 519, 537
Sse9I AATT 9 cut(s) 303, 325, 364, 653, 722, 911, 1863, 1943, 2095
SseBI AGGCCT 1 cut(s) 1335
SsiI CCGC 5 cut(s) 45, 978, 1100, 1577, 1969
SspMI CTAG 8 cut(s) 756, 773, 962, 969, 1097, 1580, 1632, 1937
StuI AGGCCT 1 cut(s) 1335
StyD4I CCNGG 3 cut(s) 592, 1142, 1428
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 4 cut(s) 128, 740, 1223, 1515
TaiI ACGT 4 cut(s) 1096, 1650, 2089, 2186
TaqI TCGA 8 cut(s) 114, 296, 361, 909, 1359, 1588, 1737, 2180
TasI AATT 9 cut(s) 303, 325, 364, 653, 722, 911, 1863, 1943, 2095
TatI WGTACW 4 cut(s) 1440, 1582, 1785, 2053
TauI GCSGC 1 cut(s) 1579
TfiI GAWTC 7 cut(s) 116, 237, 620, 746, 871, 906, 1521
Tru1I TTAA 6 cut(s) 384, 414, 467, 924, 1347, 1841
Tru9I TTAA 6 cut(s) 384, 414, 467, 924, 1347, 1841
TscAI CASTG 6 cut(s) 622, 745, 865, 1648, 1961, 2019
TseFI GTSAC 2 cut(s) 1643, 2082
Tsp45I GTSAC 2 cut(s) 1643, 2082
TspDTI ATGAA 5 cut(s) 433, 735, 1547, 2064, 2066
TspGWI ACGGA 3 cut(s) 281, 663, 1987
TspRI CASTG 6 cut(s) 622, 745, 865, 1648, 1961, 2019
VpaK11BI GGWCC 4 cut(s) 506, 524, 965, 1262
XagI CCTNNNNNAGG 1 cut(s) 1559
XapI RAATTY 2 cut(s) 364, 722
XceI RCATGY 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 1500
XhoI CTCGAG 1 cut(s) 295
XmaJI CCTAGG 1 cut(s) 772
XspI CTAG 8 cut(s) 756, 773, 962, 969, 1097, 1580, 1632, 1937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.