AT1G25340
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0023773
Physical Location & Seq
Forward (+)
8885020 .. 8886777
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G25340.2

Sequence Viewer

Length: 852 bp
ATGTCAAATATAACAAAGAAGAAGTGTAATGGAAATGAAGAGGGTGCAGAGCAGAGGAAAGGGCCTTGGACACTCGAGGAAGACACTCTTCTCACCAATTACATTTCCCATAACGGTGAAGGCCGATGGAATCTGCTCGCTAAATCTTCTGGGCTAAAGAGAGCAGGAAAAAGTTGTAGATTGAGATGGTTGAATTACCTTAAACCCGACATAAAGCGTGGGAATCTCACTCCTCAAGAACAACTTTTAATCCTTGAGCTCCATTCTAAATGGGGTAATAGGTGGTCAAAAATTTCGAAGTATTTACCAGGAAGAACAGACAACGATATCAAAAACTACTGGAGAACTAGAGTCCAGAAACAAGCACGCCAGCTCAACATAGATTCCAATAGCCACAAGTTCATAGAAGTTGTTCGTAGCTTTTGGTTTCCAAGACTGATCAACGAGATTAAAGACAACTCATACACCAACAATATTAAAGCTAATGCTCCTGATTTACTTGGACCAATTTTACGAGACAGCAAAGATTTGGGTTTCAACAACATGGATTGTTCCACTTCCATGTCAGAAGATCTCAAGAAAACTTCACAATTCATGGATTTTTCTGATCTTGAAACCACAATGTCCTTGGAAGGATCACGAGGGGGTAGTAGTCAATGTGTGAGTGAGGTTTATAGCTCCTTCCCTTGCCTAGAGGAGGAGTACATGGTGGCCGTTATGGGCAGTTCAGACATTTCAGCATTGCATGATTGTCACGTGGCTGATTCCAAGTACGAGGATGATGTGACACAAGATCTAATGTGGAACATGGATGACATTTGGCAGTTTAACGAGTATGCACACTTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.69

Weight (kDa)

5.93

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 20 - 62 4.1e-10 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 23 - 75 6.1e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 111 6.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 117 3.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25340 AT1G25340 AT1G25340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 643
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 1 cut(s) 291
AcvI CACGTG 1 cut(s) 757
AfaI GTAC 2 cut(s) 704, 773
AfiI CCNNNNNNNGG 1 cut(s) 697
AgsI TTSAA 3 cut(s) 193, 538, 614
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 5 cut(s) 259, 373, 420, 482, 678
AluI AGCT 5 cut(s) 259, 373, 420, 482, 678
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 1 cut(s) 643
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 3 cut(s) 62, 121, 711
ApoI RAATTY 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 2 cut(s) 62, 503
AsuHPI GGTGA 2 cut(s) 85, 128
AsuII TTCGAA 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 503
BanII GRGCYC 1 cut(s) 261
BauI CACGAG 1 cut(s) 639
BbrPI CACGTG 1 cut(s) 757
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 261
BccI CCATC 2 cut(s) 120, 180
BceAI ACGGC 1 cut(s) 698
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 2 cut(s) 348, 692
BglII AGATCT 2 cut(s) 571, 793
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 503
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 62, 503
BmrFI CCNGG 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 361
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 3 cut(s) 219, 275, 560
BsaAI YACGTR 1 cut(s) 757
BsaJI CCNNGG 2 cut(s) 65, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 740
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 65, 627
BseGI GGATG 2 cut(s) 784, 817
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMI GCAATG 1 cut(s) 740
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 3 cut(s) 222, 710, 713
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 3 cut(s) 64, 123, 713
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 1 cut(s) 510
BsnI GGCC 3 cut(s) 64, 123, 713
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 5 cut(s) 438, 571, 607, 635, 793
BspANI GGCC 3 cut(s) 64, 123, 713
BspPI GGATC 1 cut(s) 643
BspT104I TTCGAA 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 740
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 65, 627
BssMI GATC 5 cut(s) 438, 571, 607, 635, 793
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 2 cut(s) 65, 627
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 33, 93
BstBAI YACGTR 1 cut(s) 757
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 138, 367, 371
BstENI CCTNNNNNAGG 1 cut(s) 695
BstF5I GGATG 2 cut(s) 784, 817
BstKTI GATC 5 cut(s) 441, 574, 610, 638, 796
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 5 cut(s) 438, 571, 607, 635, 793
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 2 cut(s) 571, 793
BstYI RGATCY 2 cut(s) 571, 793
BsuRI GGCC 3 cut(s) 64, 123, 713
BtsCI GGATG 2 cut(s) 784, 817
Cac8I GCNNGC 3 cut(s) 138, 367, 371
Cfr13I GGNCC 2 cut(s) 62, 503
Csp6I GTAC 2 cut(s) 703, 772
CviAII CATG 6 cut(s) 544, 562, 595, 706, 746, 808
CviQI GTAC 2 cut(s) 703, 772
DpnI GATC 5 cut(s) 440, 573, 609, 637, 795
DpnII GATC 5 cut(s) 438, 571, 607, 635, 793
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 2 cut(s) 33, 93
EarI CTCTTC 2 cut(s) 33, 93
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 65, 627
Eco24I GRGCYC 1 cut(s) 261
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 503
Eco53kI GAGCTC 1 cut(s) 259
Eco72I CACGTG 1 cut(s) 757
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 695
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 307
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 65, 627
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 65, 627
FaeI CATG 6 cut(s) 547, 565, 598, 709, 749, 811
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 228, 260
FatI CATG 6 cut(s) 543, 561, 594, 705, 745, 807
FbaI TGATCA 1 cut(s) 438
FokI GGATG 2 cut(s) 791, 824
FriOI GRGCYC 1 cut(s) 261
FspBI CTAG 2 cut(s) 348, 692
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 3 cut(s) 64, 123, 713
Hin1II CATG 6 cut(s) 547, 565, 598, 709, 749, 811
HinfI GANTC 5 cut(s) 130, 223, 351, 383, 764
HphI GGTGA 2 cut(s) 85, 128
Hpy188I TCNGA 3 cut(s) 568, 607, 730
Hpy188III TCNNGA 6 cut(s) 236, 355, 491, 577, 611, 639
HpyAV CCTTC 3 cut(s) 113, 626, 691
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 3 cut(s) 47, 745, 839
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 6 cut(s) 547, 565, 598, 709, 749, 811
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 5 cut(s) 438, 571, 607, 635, 793
LmnI GCTCC 3 cut(s) 264, 493, 683
LpnPI CCDG 8 cut(s) 135, 150, 294, 321, 325, 368, 383, 504
MaeI CTAG 2 cut(s) 348, 692
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 2 cut(s) 752, 784
MalI GATC 5 cut(s) 440, 573, 609, 637, 795
MboI GATC 5 cut(s) 438, 571, 607, 635, 793
MboII GAAGA 7 cut(s) 31, 50, 80, 92, 138, 324, 581
MflI RGATCY 2 cut(s) 571, 793
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 6 cut(s) 97, 193, 291, 507, 590, 847
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 9 cut(s) 34, 48, 70, 243, 635, 661, 688, 691, 769
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 6 cut(s) 201, 248, 450, 477, 828, 846
MslI CAYNNNNRTG 2 cut(s) 114, 560
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
NdeII GATC 5 cut(s) 438, 571, 607, 635, 793
NlaIII CATG 6 cut(s) 547, 565, 598, 709, 749, 811
NmuCI GTSAC 2 cut(s) 752, 784
NspV TTCGAA 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 4 cut(s) 130, 223, 383, 764
PleI GAGTC 1 cut(s) 359
PmaCI CACGTG 1 cut(s) 757
PmlI CACGTG 1 cut(s) 757
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 757
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 307
PspCI CACGTG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 2 cut(s) 62, 503
PspXI VCTCGAGB 1 cut(s) 74
PsuI RGATCY 2 cut(s) 571, 793
RsaI GTAC 2 cut(s) 704, 773
RsaNI GTAC 2 cut(s) 703, 772
RseI CAYNNNNRTG 2 cut(s) 114, 560
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 6 cut(s) 201, 248, 450, 477, 828, 846
Sau3AI GATC 5 cut(s) 438, 571, 607, 635, 793
Sau96I GGNCC 2 cut(s) 62, 503
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 261
SetI ASST 9 cut(s) 201, 261, 284, 375, 422, 484, 672, 680, 759
Sfr274I CTCGAG 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 296
SinI GGWCC 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 114, 560
SmlI CTYRAG 4 cut(s) 74, 234, 254, 575
SmoI CTYRAG 4 cut(s) 74, 234, 254, 575
Sse9I AATT 6 cut(s) 97, 193, 291, 507, 590, 847
SspI AATATT 1 cut(s) 475
SspMI CTAG 2 cut(s) 348, 692
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 2 cut(s) 65, 627
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 759
TaqI TCGA 2 cut(s) 75, 296
TasI AATT 6 cut(s) 97, 193, 291, 507, 590, 847
TatI WGTACW 1 cut(s) 702
TfiI GAWTC 4 cut(s) 130, 223, 383, 764
Tru1I TTAA 6 cut(s) 201, 248, 450, 477, 828, 846
Tru9I TTAA 6 cut(s) 201, 248, 450, 477, 828, 846
TseFI GTSAC 2 cut(s) 752, 784
Tsp45I GTSAC 2 cut(s) 752, 784
TspDTI ATGAA 3 cut(s) 51, 391, 583
VpaK11BI GGWCC 1 cut(s) 503
XagI CCTNNNNNAGG 1 cut(s) 695
XapI RAATTY 1 cut(s) 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XhoI CTCGAG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 2 cut(s) 348, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.