Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027555

Physical Location & Seq

Genomic Coordinates Reverse (-)

17154865 .. 17159397

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G45229.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGTTTTTAGTACTCTTGTTTTGCTTTGTAGGCTATATGGTGGAGCTTGAAGCTGAAGTTGCAAAGATAGAAAGAAGAGAGGAAAAGTTACTAAGGAAGCCGGCAATATGTAGGAATTACAGAAGAATCAGGAGATGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

47

Amino Acids

5.9

Weight (kDa)

10.17

Isoelectric Point (pI)

82.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45229 AT1G45229

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	2 cut(s)	46, 53
AluI	AGCT	2 cut(s)	46, 53
BccI	CCATC	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	12
Bse118I	RCCGGY	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 59
Cac8I	GCNNGC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	11
CviJI	RGCY	4 cut(s)	33, 46, 53, 100
CviKI_1	RGCY	4 cut(s)	33, 46, 53, 100
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	75
FaiI	YATR	3 cut(s)	36, 38, 109
HapII	CCGG	1 cut(s)	101
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	1 cut(s)	101
Hpy188III	TCNNGA	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 59
HpyF3I	CTNAG	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	2 cut(s)	114, 115
MaeIII	GTNAC	1 cut(s)	87
MboII	GAAGA	2 cut(s)	87, 135
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	100
MspI	CCGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	30, 59
NaeI	GCCGGC	1 cut(s)	102
NgoMIV	GCCGGC	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
ScaI	AGTACT	1 cut(s)	12
SetI	ASST	2 cut(s)	48, 55
SgeI	CNNG	3 cut(s)	28, 59, 113
Sse9I	AATT	1 cut(s)	115
TasI	AATT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.