Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026886

Physical Location & Seq

Genomic Coordinates Forward (+)

18191267 .. 18193782

Gene Structure 2516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTTGGTGGGAAAGATAAGTGGATATGAAGATAATACTCGCTCTTTGGAGCGAGAAACATCTGAAATCACTTCTCTTCTCAGCCAATTTCCGGGGAATACTAATGTCCTTGTTGTTGACACCAATTTCACCACTCTACTCAACATGAAACAAATCATGAAACAATACGCTTATCAAGTGTCTATTGAGACAGATGCAGAAAAAGCTCTTGCGTTTTTGACAAGCTGCAAACATGAAATCAATATTGTGATTTGGGATTTTCATATGCCTGGAATTGATGGACTTCAAGCTCTCAAGAGCATTACTTCAAAGTTGGATTTACCTGTAGTGATTATGTCTGATGATAATCAAACGGAATCTGTGATGAAAGCAACATTTTACGGTGCTTGTGACTATGTTGTGAAACCGGTTAAAGAAGAGGTAATGGCCAATATATGGCAACACATTGTACGGAAGAGGCTGATCTTTAAACCGGATGTTGCTCCACCGAAACCGCGGATGACATGGAGTGAAGTATTTCAACCGGTTCAATCACATCTGGTTCCGACTGACGGTTTAGACCGAGACCACTTTGATTCCATAACCATAAACGGAGGTAACGGCATACAAAACATGGAAAAGAAACAAGGAAAAAAACCACGGAAGCCGCGGATGACGTGGACCGAAGAGCTTCACCAAAAATTTCTGGAAGCCATCGAAATAATTGGTGGTATCGAAAAAGCTAACCCAAAGGTACTTGTCGAATGCTTGCAAGAAATGAGGATAGAAGGAATTACTAGAAGCAATGTGGCAAGTCATCTTCAGAAACACCGTATCAATCTTGAAGAAAACCAAATTCCTCAACAAACACAAGGGAATGGTTGGGCCACTGCGTATGGTACACTAGCTCCCTCTCTCCAAGGTTCAGACAATGTCAACACAACAATACCATCGTACCTTATGAATGGTCCAGCCACTTTGAACCAAATCCAGCAGAATCAATATCAAAATGGTTTCTTGACAATGAACAACAACCAGATCATAACCAATCCTCCGCCTCCTTTGCCCTATTTGGACCATCATCACCAACAGCAACATCAGTCTTCTCCTCAATTTAATTACCTGATGAACAATGAAGAACTTCTTCAAGCCTCTGGCCTCTCTGCGACAGATCTTGAACTCACTTATCCAAGTTTACCATATGATCCACAAGAGTATCTAATCAATGGCTACAATTATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

407

Amino Acids

46.15

Weight (kDa)

5.57

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	36 - 143	3.6e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0026886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49190 AT1G49190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1218
AccB7I	CCANNNNNTGG	1 cut(s)	435
AccII	CGCG	2 cut(s)	496, 649
AciI	CCGC	5 cut(s)	494, 496, 647, 649, 1034
AclWI	GGATC	1 cut(s)	1178
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	680, 834
AcuI	CTGAAG	1 cut(s)	785
AfaI	GTAC	4 cut(s)	450, 735, 880, 935
AfiI	CCNNNNNNNGG	3 cut(s)	91, 435, 551
AgeI	ACCGGT	2 cut(s)	406, 523
AgsI	TTSAA	8 cut(s)	287, 309, 521, 530, 824, 961, 1127, 1157
AjiI	CACGTC	1 cut(s)	657
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	6 cut(s)	206, 225, 290, 670, 722, 887
AluI	AGCT	6 cut(s)	206, 225, 290, 670, 722, 887
Alw26I	GTCTC	2 cut(s)	182, 558
AlwI	GGATC	1 cut(s)	1178
AoxI	GGCC	3 cut(s)	426, 864, 1135
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	2 cut(s)	680, 834
AsiGI	ACCGGT	2 cut(s)	406, 523
Asp700I	GAANNNNTTC	4 cut(s)	516, 669, 1119, 1122
AspS9I	GGNCC	4 cut(s)	660, 864, 947, 1054
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	121, 665, 1055
AvaII	GGWCC	3 cut(s)	660, 947, 1054
BaeI	ACNNNNGTAYC	4 cut(s)	917, 950, 1178, 1211
BalI	TGGCCA	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	1074
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	4 cut(s)	272, 701, 937, 1065
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	182, 558
BfaI	CTAG	2 cut(s)	777, 884
BfmI	CTRYAG	1 cut(s)	324
BglII	AGATCT	1 cut(s)	1150
BisI	GCNGC	2 cut(s)	226, 647
BlsI	GCNGC	2 cut(s)	227, 648
Bme1390I	CCNGG	2 cut(s)	93, 270
Bme18I	GGWCC	3 cut(s)	660, 947, 1054
BmgBI	CACGTC	1 cut(s)	657
BmgT120I	GGNCC	4 cut(s)	660, 864, 947, 1054
BmiI	GGNNCC	1 cut(s)	543
BmrFI	CCNGG	2 cut(s)	93, 270
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	1074
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	5 cut(s)	92, 494, 638, 647, 898
BsaWI	WCCGGW	3 cut(s)	406, 472, 523
BsaXI	ACNNNNNCTCC	4 cut(s)	871, 901, 1015, 1045
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 435, 551
Bse118I	RCCGGY	2 cut(s)	406, 523
Bse3DI	GCAATG	1 cut(s)	790
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	5 cut(s)	92, 494, 638, 647, 898
BseGI	GGATG	3 cut(s)	481, 504, 657
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	3 cut(s)	91, 435, 551
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	1077
BseXI	GCAGC	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	496, 649
BshFI	GGCC	3 cut(s)	428, 866, 1137
BshTI	ACCGGT	2 cut(s)	406, 523
BsiSI	CCGG	4 cut(s)	92, 407, 473, 524
BslI	CCNNNNNNNGG	3 cut(s)	91, 435, 551
BsmAI	GTCTC	2 cut(s)	182, 558
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	3 cut(s)	428, 866, 1137
Bso31I	GGTCTC	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	462, 1017, 1150, 1183
BspACI	CCGC	5 cut(s)	494, 496, 647, 649, 1034
BspANI	GGCC	3 cut(s)	428, 866, 1137
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	496, 649
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	543
BspPI	GGATC	1 cut(s)	1178
BspQI	GCTCTTC	1 cut(s)	660
BspTNI	GGTCTC	1 cut(s)	558
BsrDI	GCAATG	1 cut(s)	790
BsrFI	RCCGGY	2 cut(s)	406, 523
BssAI	RCCGGY	2 cut(s)	406, 523
BssECI	CCNNGG	5 cut(s)	92, 494, 638, 647, 898
BssMI	GATC	4 cut(s)	462, 1017, 1150, 1183
BssT1I	CCWWGG	1 cut(s)	898
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	383, 554, 812
Bst6I	CTCTTC	4 cut(s)	81, 411, 449, 660
BstC8I	GCNNGC	1 cut(s)	749
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	3 cut(s)	494, 638, 647
BstF5I	GGATG	3 cut(s)	481, 504, 657
BstFNI	CGCG	2 cut(s)	496, 649
BstKTI	GATC	4 cut(s)	465, 1020, 1153, 1186
BstMAI	GTCTC	2 cut(s)	182, 558
BstMBI	GATC	4 cut(s)	462, 1017, 1150, 1183
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 1042
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	91, 268
BstSFI	CTRYAG	1 cut(s)	324
BstUI	CGCG	2 cut(s)	496, 649
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	1074
BstX2I	RGATCY	1 cut(s)	1150
BstYI	RGATCY	1 cut(s)	1150
BsuRI	GGCC	3 cut(s)	428, 866, 1137
BtgI	CCRYGG	3 cut(s)	494, 638, 647
BtrI	CACGTC	1 cut(s)	657
BtsCI	GGATG	3 cut(s)	481, 504, 657
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	1 cut(s)	867
Cac8I	GCNNGC	1 cut(s)	749
CciI	TCATGA	1 cut(s)	156
Cfr10I	RCCGGY	2 cut(s)	406, 523
Cfr13I	GGNCC	4 cut(s)	660, 864, 947, 1054
Cfr42I	CCGCGG	2 cut(s)	497, 650
Csp6I	GTAC	4 cut(s)	449, 734, 879, 934
CspAI	ACCGGT	2 cut(s)	406, 523
CviAII	CATG	5 cut(s)	145, 157, 233, 504, 613
CviQI	GTAC	4 cut(s)	449, 734, 879, 934
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	4 cut(s)	464, 1019, 1152, 1185
DpnII	GATC	4 cut(s)	462, 1017, 1150, 1183
DraI	TTTAAA	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	4 cut(s)	81, 411, 449, 660
EarI	CTCTTC	4 cut(s)	81, 411, 449, 660
EciI	GGCGGA	1 cut(s)	1023
Eco130I	CCWWGG	1 cut(s)	898
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	3 cut(s)	660, 947, 1054
Eco57I	CTGAAG	1 cut(s)	785
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	898
ErhI	CCWWGG	1 cut(s)	898
FaeI	CATG	5 cut(s)	148, 160, 236, 507, 616
FalI	AAGNNNNNCTT	2 cut(s)	1107, 1139
FatI	CATG	5 cut(s)	144, 156, 232, 503, 612
FauNDI	CATATG	2 cut(s)	264, 1180
Fnu4HI	GCNGC	2 cut(s)	226, 647
FokI	GGATG	3 cut(s)	488, 511, 664
Fsp4HI	GCNGC	2 cut(s)	226, 647
FspBI	CTAG	2 cut(s)	777, 884
GluI	GCNGC	2 cut(s)	226, 647
HaeIII	GGCC	3 cut(s)	428, 866, 1137
HapII	CCGG	4 cut(s)	92, 407, 473, 524
Hin1II	CATG	5 cut(s)	148, 160, 236, 507, 616
HincII	GTYRAC	2 cut(s)	118, 916
HindII	GTYRAC	2 cut(s)	118, 916
HinfI	GANTC	3 cut(s)	356, 575, 976
HpaII	CCGG	4 cut(s)	92, 407, 473, 524
HphI	GGTGA	3 cut(s)	121, 665, 1055
Hpy166II	GTNNAC	5 cut(s)	118, 660, 881, 916, 1175
Hpy188I	TCNGA	5 cut(s)	64, 340, 546, 804, 907
Hpy188III	TCNNGA	6 cut(s)	157, 295, 686, 821, 997, 1154
Hpy8I	GTNNAC	5 cut(s)	118, 660, 881, 916, 1175
HpyAV	CCTTC	1 cut(s)	761
HpyCH4III	ACNGT	3 cut(s)	383, 554, 812
HpyCH4IV	ACGT	1 cut(s)	656
HpyCH4V	TGCA	3 cut(s)	197, 228, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 1042
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	656
Hsp92II	CATG	5 cut(s)	148, 160, 236, 507, 616
KspI	CCGCGG	2 cut(s)	497, 650
Kzo9I	GATC	4 cut(s)	462, 1017, 1150, 1183
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	3 cut(s)	49, 487, 892
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	777, 884
MaeII	ACGT	1 cut(s)	656
MaeIII	GTNAC	2 cut(s)	389, 596
MalI	GATC	4 cut(s)	464, 1019, 1152, 1185
MboI	GATC	4 cut(s)	462, 1017, 1150, 1183
MflI	RGATCY	1 cut(s)	1150
MlsI	TGGCCA	1 cut(s)	428
MluNI	TGGCCA	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	294, 569
Mox20I	TGGCCA	1 cut(s)	428
MroXI	GAANNNNTTC	4 cut(s)	516, 669, 1119, 1122
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	3 cut(s)	411, 468, 1095
Msp20I	TGGCCA	1 cut(s)	428
MspA1I	CMGCKG	2 cut(s)	496, 649
MspI	CCGG	4 cut(s)	92, 407, 473, 524
MspR9I	CCNGG	2 cut(s)	93, 270
Mva1269I	GAATGC	1 cut(s)	749
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	2 cut(s)	496, 649
MwoI	GCNNNNNNNGC	2 cut(s)	203, 1042
NciI	CCSGG	1 cut(s)	93
NdeI	CATATG	2 cut(s)	264, 1180
NdeII	GATC	4 cut(s)	462, 1017, 1150, 1183
NlaIII	CATG	5 cut(s)	148, 160, 236, 507, 616
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	1 cut(s)	389
PagI	TCATGA	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	1 cut(s)	749
PdmI	GAANNNNTTC	4 cut(s)	516, 669, 1119, 1122
PfeI	GAWTC	3 cut(s)	356, 575, 976
PflFI	GACNNNGTC	1 cut(s)	911
PflMI	CCANNNNNTGG	1 cut(s)	435
PinAI	ACCGGT	2 cut(s)	406, 523
PkrI	GCNGC	2 cut(s)	227, 648
PsiI	TTATAA	1 cut(s)	1218
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	543
PspPI	GGNCC	4 cut(s)	660, 864, 947, 1054
PsuI	RGATCY	1 cut(s)	1150
PsyI	GACNNNGTC	1 cut(s)	911
RsaI	GTAC	4 cut(s)	450, 735, 880, 935
RsaNI	GTAC	4 cut(s)	449, 734, 879, 934
SacII	CCGCGG	2 cut(s)	497, 650
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	411, 468, 1095
SatI	GCNGC	2 cut(s)	226, 647
Sau3AI	GATC	4 cut(s)	462, 1017, 1150, 1183
Sau96I	GGNCC	4 cut(s)	660, 864, 947, 1054
ScrFI	CCNGG	2 cut(s)	93, 270
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	324
Sfr303I	CCGCGG	2 cut(s)	497, 650
SgrBI	CCGCGG	2 cut(s)	497, 650
SinI	GGWCC	3 cut(s)	660, 947, 1054
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SsiI	CCGC	5 cut(s)	494, 496, 647, 649, 1034
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	2 cut(s)	777, 884
StyD4I	CCNGG	2 cut(s)	91, 268
StyI	CCWWGG	1 cut(s)	898
TaaI	ACNGT	3 cut(s)	383, 554, 812
TaiI	ACGT	1 cut(s)	659
TaqI	TCGA	3 cut(s)	696, 714, 741
TaqII	GACCGA	2 cut(s)	576, 677
TauI	GCSGC	1 cut(s)	649
TfiI	GAWTC	3 cut(s)	356, 575, 976
Tru1I	TTAA	3 cut(s)	411, 468, 1095
Tru9I	TTAA	3 cut(s)	411, 468, 1095
TscAI	CASTG	1 cut(s)	874
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	389
TspGWI	ACGGA	4 cut(s)	368, 466, 606, 655
TspRI	CASTG	1 cut(s)	874
Tth111I	GACNNNGTC	1 cut(s)	911
Van91I	CCANNNNNTGG	1 cut(s)	435
VpaK11BI	GGWCC	3 cut(s)	660, 947, 1054
XapI	RAATTY	2 cut(s)	680, 834
XmnI	GAANNNNTTC	4 cut(s)	516, 669, 1119, 1122
XspI	CTAG	2 cut(s)	777, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.