Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027235

Physical Location & Seq

Genomic Coordinates Forward (+)

18902678 .. 18905490

Gene Structure 2813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGGGTTGTTGTCAATCGTCATTCTTGAAACCGTCGTCATTGCATGACAAGAAAATCACCTCCGACGATTTATCCGGCCGCCGTGGAAAAGGAGCCAAACGTGGTAATCGCCACCGTCATGCTAACATTAATGAAGGCAGGGGATGGCATTTTTCCGACGTGCCAGACTTCTCCGAGTTCTCGGCATCGGTTCTTCGTGACGCTACAAATAATTTCAACAAAAACGCTGTCGTATCAGTTTGTTCTGATCAAGAACCAAACCTTGTTTACCAAGGCTGCATTAGGAGCGACAAAGATAAACGTCTTATTGCCGTTAAAAAATTCTCCAAAACAACATGGCCTGATCCTAAACAATTCGCTACAGAAGCTCGGGCTATCGGCAGTTTGAGGCATGTAAGACTAGTGAATTTGATAGGTTATTGTTGTGAAGGAGATGAAAGGTTGCTTGTATCGGAGTACATGCCTAATGAAAGCCTAACCAAACATCTATTTCATTGGGAGAAACAAACCATGGAATGGGCTATGCGATTGAGAGTTGCACTTTATGTAGCTGAAGCTTTAGAATATTGTAGGCAGAGTGGACTCAAATTGTACCATGATCTCAATACTTGTCGGGTTCTCTTTGATGAGAATGGAAGTCCTCGGCTTTCATGTTTTGGATGGATGAAAAATAGCAAAGATGGCAAGAACTTCAGCACAAATCTTGCTTATACACCGCCCGAATATCTTAGAAGTGGTACGTTAATTCCAGAGAGTGTTGTCTTCAGCTTTGGGACGTTTCTTTTGGATCTTCTTAGTGGGAAACACATTCCTCCAAGTCATGCGGTTGGTACAATTCAAAAGCAAAACTTAAATGTCTTGATGGATTCACATTTAGAAGGAAACTATCCTGAGGAAGACGCAGCCATGGTGTTTGATTTGGCTTCCAAATGCCTTCACAATAACCCTAATGAACGGCCAGAAATTGGAGATATCATCTCAGTTATCACTACACTTCAACAAAAACTAGATGTTCCGTCCTATACTATGCTTGGAATTTCAAAACTTGAAAAGCTTGAAATGGAACACCCGAAATCTTTAATTTACGATGCATGTCACCAAATGGACCTTGCAGCTCTTCATCAAATTCTTGAAGCAATGGAGTACAAAGAAGATGAAGTTACTTGTGAGCTCTCTTTCCAGCAATGGGCTCAACAGATAAAAGATGTGTGCAACACTAGACAACAAGGCGATTCGGCTTTTCGGAACAAACATTTCGAATCTGCTATTGATAAATATACTCAGTTCATAGAAATAGGAATCATGATCTCTCCCACTGTTTATGCACGAAGAAGCATGTGCTATCTCTTCTGCGACCAACCAGATGCAGCACTTCGAGACGCGATGCAAGCACAATGTGTCTATTCGGACTGGCCAACTGCATTTTACCTTCAGGCCGTGGCTCTTTCCAAACTGAATATGGTCGAAGATTCAGCTACCATGCTAAAAGAAGCCTTGATCTTGGAAGATAAGAGAGGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

507

Amino Acids

57.61

Weight (kDa)

6.17

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	89 - 322	4.3e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	96 - 320	4e-23	Protein kinase domain
TPR_BSK1_C	PF25575	358 - 474	3.7e-53	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50990 AT1G50990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	516, 965
AccII	CGCG	1 cut(s)	1382
AciI	CCGC	3 cut(s)	79, 716, 824
AclWI	GGATC	2 cut(s)	338, 795
AcoI	YGGCCR	3 cut(s)	76, 956, 1412
AcsI	RAATTY	4 cut(s)	320, 406, 1035, 1125
AcuI	CTGAAG	4 cut(s)	573, 676, 748, 1415
AdeI	CACNNNGTG	1 cut(s)	1397
AfaI	GTAC	5 cut(s)	458, 593, 739, 832, 1145
AfiI	CCNNNNNNNGG	3 cut(s)	516, 965, 1186
AgsI	TTSAA	8 cut(s)	28, 217, 839, 998, 1041, 1049, 1058, 1133
AhlI	ACTAGT	1 cut(s)	400
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	8 cut(s)	368, 551, 557, 768, 1054, 1115, 1171, 1475
AluI	AGCT	8 cut(s)	368, 551, 557, 768, 1054, 1115, 1171, 1475
Alw21I	GWGCWC	1 cut(s)	1173
Alw26I	GTCTC	1 cut(s)	1371
AlwI	GGATC	2 cut(s)	338, 795
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	5 cut(s)	76, 338, 956, 1412, 1434
ApeKI	GCWGC	4 cut(s)	276, 902, 1112, 1367
ApoI	RAATTY	4 cut(s)	320, 406, 1035, 1125
ArsI	GACNNNNNNTTYG	4 cut(s)	213, 245, 766, 798
AseI	ATTAAT	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	1105
AsuHPI	GGTGA	2 cut(s)	49, 1088
AsuII	TTCGAA	1 cut(s)	1257
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	1105
AxyI	CCTNAGG	1 cut(s)	891
BalI	TGGCCA	1 cut(s)	1414
BanII	GRGCYC	2 cut(s)	1173, 1192
BbsI	GAAGAC	2 cut(s)	754, 903
Bbv12I	GWGCWC	1 cut(s)	1173
BbvI	GCAGC	4 cut(s)	263, 914, 1124, 1379
BccI	CCATC	4 cut(s)	138, 654, 674, 856
BceAI	ACGGC	4 cut(s)	66, 296, 971, 1421
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	1371
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	3 cut(s)	401, 1007, 1218
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	5 cut(s)	79, 277, 903, 1113, 1368
BlsI	GCNGC	5 cut(s)	80, 278, 904, 1114, 1369
Bme18I	GGWCC	1 cut(s)	1105
BmeT110I	CYCGRG	1 cut(s)	369
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	1105
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	4 cut(s)	194, 1078, 1354, 1374
BpiI	GAAGAC	2 cut(s)	754, 903
Bpu14I	TTCGAA	1 cut(s)	1257
BsaJI	CCNNGG	6 cut(s)	82, 271, 510, 641, 906, 1437
Bsc4I	CCNNNNNNNGG	3 cut(s)	516, 965, 1186
Bse1I	ACTGG	1 cut(s)	1415
Bse21I	CCTNAGG	1 cut(s)	891
Bse3DI	GCAATG	3 cut(s)	38, 1143, 1190
BseDI	CCNNGG	6 cut(s)	82, 271, 510, 641, 906, 1437
BseGI	GGATG	3 cut(s)	149, 665, 669
BseLI	CCNNNNNNNGG	3 cut(s)	516, 965, 1186
BseMI	GCAATG	3 cut(s)	38, 1143, 1190
BseMII	CTCAG	3 cut(s)	882, 993, 1295
BseNI	ACTGG	1 cut(s)	1415
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	263, 914, 1124, 1379
Bsh1236I	CGCG	1 cut(s)	1382
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	5 cut(s)	78, 340, 958, 1414, 1436
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	1173
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	3 cut(s)	516, 965, 1186
BsmAI	GTCTC	1 cut(s)	1371
BsmBI	CGTCTC	1 cut(s)	1371
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	5 cut(s)	78, 340, 958, 1414, 1436
BsoBI	CYCGRG	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	1257
Bsp1286I	GDGCHC	2 cut(s)	1173, 1192
Bsp143I	GATC	6 cut(s)	247, 343, 598, 787, 1305, 1497
Bsp19I	CCATGG	2 cut(s)	510, 906
BspACI	CCGC	3 cut(s)	79, 716, 824
BspANI	GGCC	5 cut(s)	78, 340, 958, 1414, 1436
BspCNI	CTCAG	3 cut(s)	883, 992, 1294
BspFNI	CGCG	1 cut(s)	1382
BspHI	TCATGA	1 cut(s)	1302
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	2 cut(s)	338, 795
BspQI	GCTCTTC	1 cut(s)	1122
BspT104I	TTCGAA	1 cut(s)	1257
BsrDI	GCAATG	3 cut(s)	38, 1143, 1190
BsrI	ACTGG	1 cut(s)	1415
BssECI	CCNNGG	6 cut(s)	82, 271, 510, 641, 906, 1437
BssMI	GATC	6 cut(s)	247, 343, 598, 787, 1305, 1497
BssT1I	CCWWGG	3 cut(s)	271, 510, 906
Bst4CI	ACNGT	3 cut(s)	33, 116, 1318
Bst6I	CTCTTC	2 cut(s)	1122, 1352
BstBI	TTCGAA	1 cut(s)	1257
BstC8I	GCNNGC	1 cut(s)	1389
BstDEI	CTNAG	5 cut(s)	728, 794, 891, 979, 1281
BstDSI	CCRYGG	4 cut(s)	82, 510, 906, 1437
BstF5I	GGATG	3 cut(s)	149, 665, 669
BstFNI	CGCG	1 cut(s)	1382
BstKTI	GATC	6 cut(s)	250, 346, 601, 790, 1308, 1500
BstMAI	GTCTC	1 cut(s)	1371
BstMBI	GATC	6 cut(s)	247, 343, 598, 787, 1305, 1497
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 365, 681, 1388
BstNSI	RCATGY	4 cut(s)	395, 463, 1095, 1339
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	1382
BstV1I	GCAGC	4 cut(s)	263, 914, 1124, 1379
BstV2I	GAAGAC	2 cut(s)	754, 903
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BstZI	CGGCCG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	891
BsuRI	GGCC	5 cut(s)	78, 340, 958, 1414, 1436
BtgI	CCRYGG	4 cut(s)	82, 510, 906, 1437
BtgZI	GCGATG	1 cut(s)	1397
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	149, 665, 669
BtsIMutI	CAGTG	1 cut(s)	1314
Cac8I	GCNNGC	1 cut(s)	1389
CciI	TCATGA	1 cut(s)	1302
Cfr13I	GGNCC	1 cut(s)	1105
CseI	GACGC	3 cut(s)	209, 908, 1388
Csp6I	GTAC	5 cut(s)	457, 592, 738, 831, 1144
CviQI	GTAC	5 cut(s)	457, 592, 738, 831, 1144
DdeI	CTNAG	5 cut(s)	728, 794, 891, 979, 1281
DpnI	GATC	6 cut(s)	249, 345, 600, 789, 1307, 1499
DpnII	GATC	6 cut(s)	247, 343, 598, 787, 1305, 1497
DraIII	CACNNNGTG	1 cut(s)	1397
EaeI	YGGCCR	3 cut(s)	76, 956, 1412
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	1122, 1352
EarI	CTCTTC	2 cut(s)	1122, 1352
Ecl136II	GAGCTC	1 cut(s)	1171
EclXI	CGGCCG	1 cut(s)	76
Eco130I	CCWWGG	3 cut(s)	271, 510, 906
Eco24I	GRGCYC	2 cut(s)	1173, 1192
Eco32I	GATATC	1 cut(s)	973
Eco47I	GGWCC	1 cut(s)	1105
Eco52I	CGGCCG	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	1171
Eco57I	CTGAAG	4 cut(s)	573, 676, 748, 1415
Eco81I	CCTNAGG	1 cut(s)	891
Eco88I	CYCGRG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	1171
EcoRV	GATATC	1 cut(s)	973
EcoT14I	CCWWGG	3 cut(s)	271, 510, 906
EcoT22I	ATGCAT	1 cut(s)	1093
EcoT38I	GRGCYC	2 cut(s)	1173, 1192
ErhI	CCWWGG	3 cut(s)	271, 510, 906
Esp3I	CGTCTC	1 cut(s)	1371
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FaqI	GGGAC	1 cut(s)	787
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	5 cut(s)	79, 277, 903, 1113, 1368
FokI	GGATG	3 cut(s)	156, 672, 676
FriOI	GRGCYC	2 cut(s)	1173, 1192
Fsp4HI	GCNGC	5 cut(s)	79, 277, 903, 1113, 1368
FspBI	CTAG	3 cut(s)	401, 1007, 1218
GluI	GCNGC	5 cut(s)	79, 277, 903, 1113, 1368
HaeIII	GGCC	5 cut(s)	78, 340, 958, 1414, 1436
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	3 cut(s)	209, 908, 1388
HindIII	AAGCTT	2 cut(s)	555, 1052
HinfI	GANTC	6 cut(s)	582, 866, 1232, 1259, 1299, 1469
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	49, 1088
Hpy166II	GTNNAC	2 cut(s)	268, 581
Hpy188I	TCNGA	7 cut(s)	64, 157, 175, 247, 454, 1245, 1408
Hpy188III	TCNNGA	9 cut(s)	25, 197, 251, 749, 859, 890, 1130, 1303, 1376
Hpy8I	GTNNAC	2 cut(s)	268, 581
Hpy99I	CGWCG	3 cut(s)	37, 68, 161
HpyAV	CCTTC	5 cut(s)	128, 422, 872, 944, 1439
HpyCH4III	ACNGT	3 cut(s)	33, 116, 1318
HpyCH4IV	ACGT	5 cut(s)	100, 159, 301, 740, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 365, 681, 1388
HpyF3I	CTNAG	5 cut(s)	728, 794, 891, 979, 1281
HpySE526I	ACGT	5 cut(s)	100, 159, 301, 740, 776
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	6 cut(s)	247, 343, 598, 787, 1305, 1497
LguI	GCTCTTC	1 cut(s)	1122
LmnI	GCTCC	2 cut(s)	92, 285
Lsp1109I	GCAGC	4 cut(s)	263, 914, 1124, 1379
LweI	GCATC	4 cut(s)	194, 1078, 1354, 1374
MaeI	CTAG	3 cut(s)	401, 1007, 1218
MaeII	ACGT	5 cut(s)	100, 159, 301, 740, 776
MaeIII	GTNAC	3 cut(s)	197, 1094, 1159
MalI	GATC	6 cut(s)	249, 345, 600, 789, 1307, 1499
MboI	GATC	6 cut(s)	247, 343, 598, 787, 1305, 1497
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	2 cut(s)	1173, 1192
MlsI	TGGCCA	1 cut(s)	1414
MluNI	TGGCCA	1 cut(s)	1414
MlyI	GAGTC	1 cut(s)	576
MmeI	TCCRAC	2 cut(s)	87, 180
MnlI	CCTC	6 cut(s)	70, 381, 651, 822, 886, 1508
Mox20I	TGGCCA	1 cut(s)	1414
Mph1103I	ATGCAT	1 cut(s)	1093
MscI	TGGCCA	1 cut(s)	1414
MseI	TTAA	5 cut(s)	129, 315, 743, 851, 1079
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	1414
MspI	CCGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	1382
MwoI	GCNNNNNNNGC	4 cut(s)	285, 365, 681, 1388
NcoI	CCATGG	2 cut(s)	510, 906
NdeII	GATC	6 cut(s)	247, 343, 598, 787, 1305, 1497
NlaIV	GGNNCC	1 cut(s)	94
NmeAIII	GCCGAG	2 cut(s)	161, 622
NmuCI	GTSAC	2 cut(s)	197, 1094
NsiI	ATGCAT	1 cut(s)	1093
NspI	RCATGY	4 cut(s)	395, 463, 1095, 1339
NspV	TTCGAA	1 cut(s)	1257
PagI	TCATGA	1 cut(s)	1302
PciSI	GCTCTTC	1 cut(s)	1122
PfeI	GAWTC	5 cut(s)	866, 1232, 1259, 1299, 1469
PflMI	CCANNNNNTGG	2 cut(s)	516, 965
PkrI	GCNGC	5 cut(s)	80, 278, 904, 1114, 1369
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
PshBI	ATTAAT	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	1173
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	1105
PsuI	RGATCY	1 cut(s)	787
RsaI	GTAC	5 cut(s)	458, 593, 739, 832, 1145
RsaNI	GTAC	5 cut(s)	457, 592, 738, 831, 1144
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	1173
SapI	GCTCTTC	1 cut(s)	1122
SaqAI	TTAA	5 cut(s)	129, 315, 743, 851, 1079
SatI	GCNGC	5 cut(s)	79, 277, 903, 1113, 1368
Sau3AI	GATC	6 cut(s)	247, 343, 598, 787, 1305, 1497
Sau96I	GGNCC	1 cut(s)	1105
SchI	GAGTC	1 cut(s)	576
SduI	GDGCHC	2 cut(s)	1173, 1192
SfaNI	GCATC	4 cut(s)	194, 1078, 1354, 1374
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	1257
SinI	GGWCC	1 cut(s)	1105
SmiMI	CAYNNNNRTG	1 cut(s)	117
SpeI	ACTAGT	1 cut(s)	400
SsiI	CCGC	3 cut(s)	79, 716, 824
SspI	AATATT	1 cut(s)	566
SspMI	CTAG	3 cut(s)	401, 1007, 1218
SstI	GAGCTC	1 cut(s)	1173
StyI	CCWWGG	3 cut(s)	271, 510, 906
TaaI	ACNGT	3 cut(s)	33, 116, 1318
TaiI	ACGT	5 cut(s)	103, 162, 304, 743, 779
TaqI	TCGA	3 cut(s)	1257, 1375, 1464
TatI	WGTACW	2 cut(s)	456, 1143
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	5 cut(s)	866, 1232, 1259, 1299, 1469
Tru1I	TTAA	5 cut(s)	129, 315, 743, 851, 1079
Tru9I	TTAA	5 cut(s)	129, 315, 743, 851, 1079
TscAI	CASTG	1 cut(s)	1321
TseFI	GTSAC	2 cut(s)	197, 1094
TseI	GCWGC	4 cut(s)	276, 902, 1112, 1367
Tsp45I	GTSAC	2 cut(s)	197, 1094
TspGWI	ACGGA	1 cut(s)	1005
TspRI	CASTG	1 cut(s)	1321
Van91I	CCANNNNNTGG	2 cut(s)	516, 965
VpaK11BI	GGWCC	1 cut(s)	1105
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	4 cut(s)	320, 406, 1035, 1125
XceI	RCATGY	4 cut(s)	395, 463, 1095, 1339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1456
XspI	CTAG	3 cut(s)	401, 1007, 1218
Zsp2I	ATGCAT	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.