AT1G67030

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0023596
Physical Location & Seq
Forward (+)
25016402 .. 25017512
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67030.1

Sequence Viewer

Length: 594 bp
ATGGCGACTGAAACATCTTCTTTGAAGCTCTTCGGTATAAACCTACTTGAAACGACGTCGGTTCAAAACCAGTCATCGGAACCAAGACCCGGATCCGGATCAGGATCCGAGTCACGTAAGTACGAGTGTCAATACTGTTGTAGAGAGTTTGCTAACTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAGAAAGAGCGTCAGCTTCTTAAACGTGCACAGATGTTAGCTACTCGTGGTTTGCCACGTCATCATAATTTTCACCCTCATACCAATCCGCTTCTCTCCGCCTTCGCGCCGCTGCCTCACCTCCTCTCTCAGCCGCATCCTCCGCCGCATATGATGCTCTCTCCTTCTTCTTCGAGTTCTAAGTGGCTTTACGGTGAACACATGTCGTCACAAAACGCCGTTGGGTACTTTCATGGTGGAAGGGGACTTTACGGAGGTGGCATGGAGTCTATGGCCGGAGAAGTAAAGACTCATGGTGGTTCTTTGCCGGAGATGAGGAGGTTCGCCGGAGATAGTGATCGGAGTAGCGGAATTAAGTTAGAGAATGGTATTGGGCTGGACCTCCATTTAAGCCTTGGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

197

Amino Acids

21.41

Weight (kDa)

9.07

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67030
prunus_persica Prupe.3G143800_v2.0.a1 Prupe.3G143800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 59
AccII CGCG 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 95
AciI CCGC 7 cut(s) 278, 288, 299, 323, 332, 335, 537
AclWI GGATC 5 cut(s) 87, 99, 100, 106, 112
AcoI YGGCCR 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 122, 416
AfiI CCNNNNNNNGG 3 cut(s) 76, 89, 95
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 3 cut(s) 25, 50, 65
AjiI CACGTC 1 cut(s) 248
AluBI AGCT 4 cut(s) 28, 164, 205, 230
AluI AGCT 4 cut(s) 28, 164, 205, 230
Alw21I GWGCWC 1 cut(s) 220
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 5 cut(s) 87, 99, 100, 106, 112
Aor13HI TCCGGA 1 cut(s) 95
AoxI GGCC 2 cut(s) 462, 587
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 301
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 568, 587
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 4 cut(s) 167, 254, 299, 395
AvaII GGWCC 1 cut(s) 568
BaeGI GKGCMC 1 cut(s) 220
BamHI GGATCC 2 cut(s) 92, 104
BauI CACGAG 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 288
BceAI ACGGC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 90
BisI GCNGC 4 cut(s) 299, 302, 323, 335
BlsI GCNGC 4 cut(s) 300, 303, 324, 336
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 568
BmgBI CACGTC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 568, 587
BmiI GGNNCC 3 cut(s) 81, 94, 106
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 2 cut(s) 333, 334
BpuEI CTTGAG 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 90
BsaAI YACGTR 1 cut(s) 116
BsaBI GATNNNNATC 3 cut(s) 97, 103, 525
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 583
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 89, 95
Bse1I ACTGG 1 cut(s) 70
Bse8I GATNNNNATC 3 cut(s) 97, 103, 525
BseAI TCCGGA 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 583
BseGI GGATG 1 cut(s) 325
BseJI GATNNNNATC 3 cut(s) 97, 103, 525
BseLI CCNNNNNNNGG 3 cut(s) 76, 89, 95
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 2 cut(s) 302, 520
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 464, 589
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 5 cut(s) 90, 96, 465, 497, 516
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 3 cut(s) 76, 89, 95
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 2 cut(s) 464, 589
Bsp1286I GDGCHC 1 cut(s) 220
Bsp13I TCCGGA 1 cut(s) 95
Bsp143I GATC 4 cut(s) 92, 98, 104, 526
BspACI CCGC 7 cut(s) 278, 288, 299, 323, 332, 335, 537
BspANI GGCC 2 cut(s) 464, 589
BspCNI CTCAG 1 cut(s) 331
BspEI TCCGGA 1 cut(s) 95
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 3 cut(s) 81, 94, 106
BspPI GGATC 5 cut(s) 87, 99, 100, 106, 112
BspQI GCTCTTC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 583
BssMI GATC 4 cut(s) 92, 98, 104, 526
BssNI GRCGYC 1 cut(s) 56
BssSI CACGAG 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 583
Bst2BI CACGAG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 137, 383
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 343
BstBAI YACGTR 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 318, 369
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 4 cut(s) 95, 101, 107, 529
BstMBI GATC 4 cut(s) 92, 98, 104, 526
BstMWI GCNNNNNNNGC 2 cut(s) 331, 343
BstNSI RCATGY 1 cut(s) 394
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 288
BstX2I RGATCY 2 cut(s) 92, 104
BstYI RGATCY 2 cut(s) 92, 104
BsuRI GGCC 2 cut(s) 464, 589
BtrI CACGTC 1 cut(s) 248
BtsCI GGATG 1 cut(s) 325
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 568, 587
CseI GACGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 121, 415
CviAII CATG 5 cut(s) 391, 422, 451, 482, 591
CviQI GTAC 2 cut(s) 121, 415
DdeI CTNAG 2 cut(s) 318, 369
DpnI GATC 4 cut(s) 94, 100, 106, 528
DpnII GATC 4 cut(s) 92, 98, 104, 526
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 2 cut(s) 277, 321
Eco130I CCWWGG 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 568
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 5 cut(s) 394, 425, 454, 485, 594
FaqI GGGAC 1 cut(s) 447
FatI CATG 5 cut(s) 390, 421, 450, 481, 590
FauNDI CATATG 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 299, 302, 323, 335
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 4 cut(s) 299, 302, 323, 335
GlaI GCGC 1 cut(s) 297
GluI GCNGC 4 cut(s) 299, 302, 323, 335
HaeIII GGCC 2 cut(s) 464, 589
HapII CCGG 5 cut(s) 90, 96, 465, 497, 516
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 5 cut(s) 394, 425, 454, 485, 594
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 3 cut(s) 110, 455, 478
HpaII CCGG 5 cut(s) 90, 96, 465, 497, 516
HphI GGTGA 4 cut(s) 167, 254, 299, 395
Hpy166II GTNNAC 2 cut(s) 218, 386
Hpy188I TCNGA 3 cut(s) 79, 109, 531
Hpy188III TCNNGA 2 cut(s) 96, 102
Hpy8I GTNNAC 2 cut(s) 218, 386
Hpy99I CGWCG 2 cut(s) 58, 61
HpyAV CCTTC 3 cut(s) 301, 363, 423
HpyCH4III ACNGT 2 cut(s) 137, 383
HpyCH4IV ACGT 4 cut(s) 56, 115, 214, 247
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 343
HpyF3I CTNAG 2 cut(s) 318, 369
HpySE526I ACGT 4 cut(s) 56, 115, 214, 247
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 5 cut(s) 394, 425, 454, 485, 594
HspAI GCGC 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 95
Kzo9I GATC 4 cut(s) 92, 98, 104, 526
LguI GCTCTTC 1 cut(s) 35
LpnPI CCDG 8 cut(s) 83, 87, 103, 109, 478, 510, 529, 551
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 2 cut(s) 333, 334
MaeII ACGT 4 cut(s) 56, 115, 214, 247
MaeIII GTNAC 3 cut(s) 111, 173, 396
MalI GATC 4 cut(s) 94, 100, 106, 528
MboI GATC 4 cut(s) 92, 98, 104, 526
MboII GAAGA 4 cut(s) 9, 22, 348, 351
MflI RGATCY 2 cut(s) 92, 104
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 2 cut(s) 256, 540
MlyI GAGTC 3 cut(s) 119, 464, 472
MnlI CCTC 9 cut(s) 276, 315, 320, 323, 339, 437, 498, 501, 581
MroI TCCGGA 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 3 cut(s) 210, 543, 578
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 5 cut(s) 90, 96, 465, 497, 516
MspR9I CCNGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 331, 343
NciI CCSGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 339
NdeII GATC 4 cut(s) 92, 98, 104, 526
NlaIII CATG 5 cut(s) 394, 425, 454, 485, 594
NlaIV GGNNCC 3 cut(s) 81, 94, 106
NmuCI GTSAC 3 cut(s) 111, 173, 396
NspI RCATGY 1 cut(s) 394
PciI ACATGT 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 29
PkrI GCNGC 4 cut(s) 300, 303, 324, 336
PleI GAGTC 3 cut(s) 118, 463, 472
PpsI GAGTC 3 cut(s) 118, 463, 472
Ppu21I YACGTR 1 cut(s) 116
PscI ACATGT 1 cut(s) 390
PspEI GGTNACC 1 cut(s) 173
PspN4I GGNNCC 3 cut(s) 81, 94, 106
PspPI GGNCC 2 cut(s) 568, 587
PsuI RGATCY 2 cut(s) 92, 104
RsaI GTAC 2 cut(s) 122, 416
RsaNI GTAC 2 cut(s) 121, 415
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 3 cut(s) 210, 543, 578
SatI GCNGC 4 cut(s) 299, 302, 323, 335
Sau3AI GATC 4 cut(s) 92, 98, 104, 526
Sau96I GGNCC 2 cut(s) 568, 587
SchI GAGTC 3 cut(s) 119, 464, 472
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 2 cut(s) 333, 334
SinI GGWCC 1 cut(s) 568
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 2 cut(s) 256, 540
SsiI CCGC 7 cut(s) 278, 288, 299, 323, 332, 335, 537
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 2 cut(s) 137, 383
TaiI ACGT 4 cut(s) 59, 118, 217, 250
TaqI TCGA 1 cut(s) 362
TasI AATT 2 cut(s) 256, 540
TauI GCSGC 3 cut(s) 301, 325, 337
Tru1I TTAA 3 cut(s) 210, 543, 578
Tru9I TTAA 3 cut(s) 210, 543, 578
TseFI GTSAC 3 cut(s) 111, 173, 396
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 3 cut(s) 111, 173, 396
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 1 cut(s) 456
VneI GTGCAC 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 568
XceI RCATGY 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 29
ZraI GACGTC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.