Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027060

Physical Location & Seq

Genomic Coordinates Forward (+)

26157702 .. 26159094

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGATGGTGCATGCTGACGTGGCGTCTCTCTCCATAACACCTTGCTTCCCGTCTTCTTTGTCTTCGTCCTCACATCATCACTATAACCAACAACAACATTGTATCATGTCGGAAGATCAACACCATTCGATGGATCAGACCACTTCATCGGACTACTTCTCTTTAAATATCGACAATGCTCAACATCTCCGTAGCTACTACACAAGTCATAGAGAAGAAGACATGAACCCTAATCTAAGTGATTACAGTAATTGCAACAAGAAAGACACAACAGTCTATAGAAGCTGTGGACACTCGTCAAAAGCTTCGGTGTCTAGAGGACATTGGAGACCAGCTGAAGATACTAAGCTCAAAGAACTAGTCGCCGTCTACGGTCCACAAAACTGGAACCTCATAGCTGAGAAGCTCCAAGGAAGATCCGGGAAAAGCTGTAGGCTTCGATGGTTTAACCAACTAGACCCAAGGATAAATAGAAGAGCCTTCACTGAGGAAGAAGAAGAGAGGCTAATGCAAGCTCATAGGCTTTATGGTAACAAATGGGCGATGATAGCGAGGCTTTTCCCTGGTAGGACTGATAATTCTGTGAAGAACCATTGGCATGTTATAATGGCTCGCAAGTTTAGGGAACAATCTTCTTCTTACCGTAGGAGGAAGACGATGGTTTCTCTTAAGCCACTCATTAACCCTAATCCTCACATTTTCAATGATTTTGACCCTACCCGGTTAGCTTTGACCCACCTTGCTAGTAGTGACCATAAGCAGCTTATGTTACCAGTTCCTTGCTTCCCAGGTTATGATCATGAAAATGAGAGTCCATTAATGGTGGATATGTTCGAAACCCAAATGATGGTTGGCGATTACATTGCATGGACACAAGAGGCAACTACATTCGATTTCTTAAACCAAACCGGGAAGAGTGAGATATTTGAAAGAATCAATGAGGAGAAGAAACCACCATTTTTCGATTTTCTTGGGTTGGGGACGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010199 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048859 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090691 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

330

Amino Acids

38.44

Weight (kDa)

6.81

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	107 - 153	1.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	110 - 170	9.9e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	159 - 201	5.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	162 - 202	3.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69560 AT1G69560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AasI	GACNNNNNNGTC	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	133, 850
AccI	GTMKAC	1 cut(s)	372
AclWI	GGATC	2 cut(s)	144, 414
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	133, 850
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	2 cut(s)	706, 932
AhdI	GACNNNNNGTC	1 cut(s)	25
AhlI	ACTAGT	1 cut(s)	361
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	565, 790
Alw26I	GTCTC	2 cut(s)	33, 325
AlwI	GGATC	2 cut(s)	144, 414
ApeKI	GCWGC	1 cut(s)	763
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
AseI	ATTAAT	1 cut(s)	821
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	3 cut(s)	424, 724, 913
AsuII	TTCGAA	1 cut(s)	837
AvaII	GGWCC	1 cut(s)	377
BbsI	GAAGAC	4 cut(s)	48, 57, 228, 662
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	4 cut(s)	127, 438, 655, 844
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	848, 882
BciT130I	CCWGG	2 cut(s)	567, 792
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	3 cut(s)	424, 724, 913
BcoDI	GTCTC	2 cut(s)	33, 325
BcuI	ACTAGT	1 cut(s)	361
BfaI	CTAG	4 cut(s)	318, 362, 458, 747
BfmI	CTRYAG	2 cut(s)	280, 433
BfrI	CTTAAG	1 cut(s)	671
BisI	GCNGC	1 cut(s)	764
BlsI	GCNGC	1 cut(s)	765
Bme1390I	CCNGG	5 cut(s)	424, 567, 724, 792, 913
Bme18I	GGWCC	1 cut(s)	377
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	5 cut(s)	424, 567, 724, 792, 913
BoxI	GACNNNNGTC	1 cut(s)	298
BpiI	GAAGAC	4 cut(s)	48, 57, 228, 662
Bpu14I	TTCGAA	1 cut(s)	837
BpuMI	CCSGG	3 cut(s)	424, 724, 913
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	4 cut(s)	412, 464, 565, 790
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 850
Bse1I	ACTGG	2 cut(s)	392, 776
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	2 cut(s)	567, 792
BseDI	CCNNGG	4 cut(s)	412, 464, 565, 790
BseLI	CCNNNNNNNGG	2 cut(s)	133, 850
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	2 cut(s)	393, 480
BseNI	ACTGG	2 cut(s)	392, 776
BseRI	GAGGAG	1 cut(s)	959
BseXI	GCAGC	1 cut(s)	775
BsiSI	CCGG	3 cut(s)	423, 724, 912
BslI	CCNNNNNNNGG	2 cut(s)	133, 850
BsmAI	GTCTC	2 cut(s)	33, 325
BsmBI	CGTCTC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	325
Bsp119I	TTCGAA	1 cut(s)	837
Bsp143I	GATC	4 cut(s)	118, 136, 419, 799
BspCNI	CTCAG	2 cut(s)	394, 481
BspHI	TCATGA	1 cut(s)	802
BspLI	GGNNCC	1 cut(s)	392
BspPI	GGATC	2 cut(s)	144, 414
BspQI	GCTCTTC	1 cut(s)	472
BspT104I	TTCGAA	1 cut(s)	837
BspTI	CTTAAG	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	864
BsrI	ACTGG	2 cut(s)	392, 776
BssECI	CCNNGG	4 cut(s)	412, 464, 565, 790
BssMI	GATC	4 cut(s)	118, 136, 419, 799
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	2 cut(s)	412, 464
Bst2UI	CCWGG	2 cut(s)	567, 792
Bst4CI	ACNGT	5 cut(s)	251, 277, 377, 647, 988
Bst6I	CTCTTC	3 cut(s)	472, 495, 911
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	671
BstBI	TTCGAA	1 cut(s)	837
BstC8I	GCNNGC	3 cut(s)	15, 516, 616
BstDEI	CTNAG	4 cut(s)	239, 348, 402, 489
BstKTI	GATC	4 cut(s)	121, 139, 422, 802
BstMAI	GTCTC	2 cut(s)	33, 325
BstMBI	GATC	4 cut(s)	118, 136, 419, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 551
BstNI	CCWGG	2 cut(s)	567, 792
BstNSI	RCATGY	2 cut(s)	17, 605
BstPAI	GACNNNNGTC	1 cut(s)	298
BstSCI	CCNGG	5 cut(s)	422, 565, 722, 790, 911
BstSFI	CTRYAG	2 cut(s)	280, 433
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	4 cut(s)	48, 57, 228, 662
BstX2I	RGATCY	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	560
BtrI	CACGTC	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	3 cut(s)	15, 516, 616
CciI	TCATGA	1 cut(s)	802
Cfr13I	GGNCC	1 cut(s)	377
CseI	GACGC	1 cut(s)	15
CviAII	CATG	6 cut(s)	14, 109, 226, 602, 803, 870
DdeI	CTNAG	4 cut(s)	239, 348, 402, 489
DpnI	GATC	4 cut(s)	120, 138, 421, 801
DpnII	GATC	4 cut(s)	118, 136, 419, 799
DraI	TTTAAA	1 cut(s)	168
DrdI	GACNNNNNNGTC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	3 cut(s)	472, 495, 911
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	3 cut(s)	472, 495, 911
Eco130I	CCWWGG	2 cut(s)	412, 464
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	565, 790
EcoT14I	CCWWGG	2 cut(s)	412, 464
ErhI	CCWWGG	2 cut(s)	412, 464
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	6 cut(s)	17, 112, 229, 605, 806, 873
FatI	CATG	6 cut(s)	13, 108, 225, 601, 802, 869
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	764
Fsp4HI	GCNGC	1 cut(s)	764
FspBI	CTAG	4 cut(s)	318, 362, 458, 747
GluI	GCNGC	1 cut(s)	764
HapII	CCGG	3 cut(s)	423, 724, 912
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	6 cut(s)	17, 112, 229, 605, 806, 873
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	2 cut(s)	814, 936
HpaII	CCGG	3 cut(s)	423, 724, 912
Hpy166II	GTNNAC	3 cut(s)	293, 373, 380
Hpy188I	TCNGA	3 cut(s)	115, 141, 154
Hpy188III	TCNNGA	2 cut(s)	318, 803
Hpy8I	GTNNAC	3 cut(s)	293, 373, 380
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	5 cut(s)	251, 277, 377, 647, 988
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	13, 258, 514, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 551
HpyF3I	CTNAG	4 cut(s)	239, 348, 402, 489
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	6 cut(s)	17, 112, 229, 605, 806, 873
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	4 cut(s)	118, 136, 419, 799
LguI	GCTCTTC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	775
MaeI	CTAG	4 cut(s)	318, 362, 458, 747
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	533, 752, 771
MalI	GATC	4 cut(s)	120, 138, 421, 801
MboI	GATC	4 cut(s)	118, 136, 419, 799
MflI	RGATCY	1 cut(s)	419
MluCI	AATT	2 cut(s)	253, 580
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	1 cut(s)	93
MseI	TTAA	6 cut(s)	167, 450, 672, 684, 821, 902
MslI	CAYNNNNRTG	2 cut(s)	600, 807
MspA1I	CMGCKG	1 cut(s)	338
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	3 cut(s)	423, 724, 912
MspR9I	CCNGG	5 cut(s)	424, 567, 724, 792, 913
MvaI	CCWGG	2 cut(s)	567, 792
MwoI	GCNNNNNNNGC	2 cut(s)	23, 551
NciI	CCSGG	3 cut(s)	424, 724, 913
NdeII	GATC	4 cut(s)	118, 136, 419, 799
NlaIII	CATG	6 cut(s)	17, 112, 229, 605, 806, 873
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	752
NspI	RCATGY	2 cut(s)	17, 605
NspV	TTCGAA	1 cut(s)	837
PaeI	GCATGC	1 cut(s)	17
PagI	TCATGA	1 cut(s)	802
PciSI	GCTCTTC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	936
PflMI	CCANNNNNTGG	2 cut(s)	133, 850
PfoI	TCCNGGA	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	765
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
PshAI	GACNNNNGTC	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	821
PsiI	TTATAA	1 cut(s)	608
Psp6I	CCWGG	2 cut(s)	565, 790
PspGI	CCWGG	2 cut(s)	565, 790
PspN4I	GGNNCC	1 cut(s)	392
PspPI	GGNCC	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	338
RseI	CAYNNNNRTG	2 cut(s)	600, 807
SapI	GCTCTTC	1 cut(s)	472
SaqAI	TTAA	6 cut(s)	167, 450, 672, 684, 821, 902
SatI	GCNGC	1 cut(s)	764
Sau3AI	GATC	4 cut(s)	118, 136, 419, 799
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	5 cut(s)	424, 567, 724, 792, 913
SfcI	CTRYAG	2 cut(s)	280, 433
SfuI	TTCGAA	1 cut(s)	837
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	600, 807
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SpeI	ACTAGT	1 cut(s)	361
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	253, 580
SspMI	CTAG	4 cut(s)	318, 362, 458, 747
StyD4I	CCNGG	5 cut(s)	422, 565, 722, 790, 911
StyI	CCWWGG	2 cut(s)	412, 464
TaaI	ACNGT	5 cut(s)	251, 277, 377, 647, 988
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	6 cut(s)	131, 174, 442, 837, 894, 966
TasI	AATT	2 cut(s)	253, 580
TfiI	GAWTC	1 cut(s)	936
Tru1I	TTAA	6 cut(s)	167, 450, 672, 684, 821, 902
Tru9I	TTAA	6 cut(s)	167, 450, 672, 684, 821, 902
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	1 cut(s)	763
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	3 cut(s)	138, 242, 819
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	493
Van91I	CCANNNNNTGG	2 cut(s)	133, 850
Vha464I	CTTAAG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	377
VspI	ATTAAT	1 cut(s)	821
XbaI	TCTAGA	1 cut(s)	317
XceI	RCATGY	2 cut(s)	17, 605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	851
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	4 cut(s)	318, 362, 458, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.