AT1G71030
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0027311
Physical Location & Seq
Reverse (-)
26795052 .. 26796532
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71030.1

Sequence Viewer

Length: 588 bp
ATGAACAAAACCCGCCTTCGTGCTCTCTCCCCACCTTCCGGTATGCAACACCGTAAGAGATGTCGATTGAGAGGTCGAAACTACGTAAGGCCAGAAGTTAAACAACGCAACTTCTCAAAAGATGAAGACGATCTCATCCTCAAGCTTCATGCACTTCTTGGCAATAGATGGTCATTGATAGCGGGAAGATTGCCAGGACGAACCGACAACGAAGTTAGGATCCATTGGGAAACTTACCTAAAAAGGAAGCTCGTAAAAATGGGAATCGACCCAACCAATCATCGTCTCCACCATCACACCAACTACATTTCTAGACGTCACCTCCATTCTTCACATAAGGAACATGAAACCAAGATTATTAGTGATCAATCTTCTTCGGTATCCGAATCATGTGGTGTAACAATTTTGCCCATTCCAAGTACCAATTGCTCGGAGGATAGTACTAGTACCGGACGAAGTCATTTGCCTGACCTAAACATTGGTCTCATCCCGGCCGTGACTTCTTTGCCAGCTCTTTGCCTTCAGGACTCTAGCGAATCCTCTACCAATGGTTCAACAGGTCAAGAAACGCTTCTTCTATTCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

195

Amino Acids

22.1

Weight (kDa)

9.85

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 37 - 80 3.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 38 - 84 2.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0027311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71030 AT1G71030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 319
AciI CCGC 2 cut(s) 13, 182
AclWI GGATC 2 cut(s) 214, 227
AcoI YGGCCR 1 cut(s) 492
AcuI CTGAAG 1 cut(s) 506
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 3 cut(s) 421, 442, 448
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 555
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 3 cut(s) 145, 250, 512
AluI AGCT 3 cut(s) 145, 250, 512
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 290, 488
AlwI GGATC 2 cut(s) 214, 227
AoxI GGCC 2 cut(s) 89, 492
Asp700I GAANNNNTTC 1 cut(s) 570
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 1 cut(s) 311
BamHI GGATCC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 2 cut(s) 162, 300
BceAI ACGGC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 195
BciVI GTATCC 1 cut(s) 391
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 2 cut(s) 290, 488
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 3 cut(s) 312, 444, 531
BfuI GTATCC 1 cut(s) 391
BmcAI AGTACT 1 cut(s) 442
Bme1390I CCNGG 2 cut(s) 195, 491
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 2 cut(s) 195, 491
BpiI GAAGAC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 488
BsaWI WCCGGW 2 cut(s) 38, 449
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 195
BseGI GGATG 2 cut(s) 135, 486
BseLI CCNNNNNNNGG 1 cut(s) 38
BseX3I CGGCCG 1 cut(s) 492
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 2 cut(s) 91, 494
BsiEI CGRYCG 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 3 cut(s) 39, 450, 491
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 2 cut(s) 290, 488
BsmBI CGTCTC 1 cut(s) 290
BsnI GGCC 2 cut(s) 91, 494
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 3 cut(s) 130, 219, 364
BspACI CCGC 2 cut(s) 13, 182
BspANI GGCC 2 cut(s) 91, 494
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 2 cut(s) 214, 227
BspTNI GGTCTC 1 cut(s) 488
BssMI GATC 3 cut(s) 130, 219, 364
BssNI GRCGYC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 316
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 510
BstF5I GGATG 2 cut(s) 135, 486
BstKTI GATC 3 cut(s) 133, 222, 367
BstMAI GTCTC 2 cut(s) 290, 488
BstMBI GATC 3 cut(s) 130, 219, 364
BstMCI CGRYCG 1 cut(s) 495
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 193, 489
BstSNI TACGTA 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 492
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 2 cut(s) 91, 494
BtsCI GGATG 2 cut(s) 135, 486
Cac8I GCNNGC 1 cut(s) 510
Csp6I GTAC 3 cut(s) 420, 441, 447
CviAII CATG 3 cut(s) 149, 344, 390
CviJI RGCY 5 cut(s) 91, 145, 250, 494, 512
CviKI_1 RGCY 5 cut(s) 91, 145, 250, 494, 512
CviQI GTAC 3 cut(s) 420, 441, 447
DpnI GATC 3 cut(s) 132, 221, 366
DpnII GATC 3 cut(s) 130, 219, 364
EaeI YGGCCR 1 cut(s) 492
EagI CGGCCG 1 cut(s) 492
EclXI CGGCCG 1 cut(s) 492
Eco105I TACGTA 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 488
Eco52I CGGCCG 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 3 cut(s) 152, 347, 393
FaiI YATR 5 cut(s) 44, 150, 336, 345, 391
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 3 cut(s) 148, 343, 389
FauI CCCGC 2 cut(s) 20, 175
FbaI TGATCA 1 cut(s) 364
FokI GGATG 2 cut(s) 122, 473
FspBI CTAG 3 cut(s) 312, 444, 531
HaeIII GGCC 2 cut(s) 91, 494
HapII CCGG 3 cut(s) 39, 450, 491
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 3 cut(s) 152, 347, 393
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 4 cut(s) 264, 386, 527, 536
HpaII CCGG 3 cut(s) 39, 450, 491
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 3 cut(s) 385, 433, 584
Hpy188III TCNNGA 3 cut(s) 312, 524, 563
HpyAV CCTTC 3 cut(s) 26, 45, 530
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 2 cut(s) 84, 316
HpyCH4V TGCA 2 cut(s) 46, 152
HpySE526I ACGT 2 cut(s) 84, 316
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 3 cut(s) 152, 347, 393
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 3 cut(s) 130, 219, 364
MaeI CTAG 3 cut(s) 312, 444, 531
MaeII ACGT 2 cut(s) 84, 316
MaeIII GTNAC 3 cut(s) 317, 397, 496
MalI GATC 3 cut(s) 132, 221, 366
MboI GATC 3 cut(s) 130, 219, 364
MboII GAAGA 6 cut(s) 137, 198, 321, 363, 366, 566
MfeI CAATTG 1 cut(s) 424
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 2 cut(s) 402, 424
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 5 cut(s) 65, 149, 332, 427, 550
MroXI GAANNNNTTC 1 cut(s) 570
MseI TTAA 1 cut(s) 99
MspI CCGG 3 cut(s) 39, 450, 491
MspR9I CCNGG 2 cut(s) 195, 491
MunI CAATTG 1 cut(s) 424
MvaI CCWGG 1 cut(s) 195
NciI CCSGG 1 cut(s) 491
NdeII GATC 3 cut(s) 130, 219, 364
NlaIII CATG 3 cut(s) 152, 347, 393
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 2 cut(s) 317, 496
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 3 cut(s) 264, 386, 536
PflFI GACNNNGTC 1 cut(s) 456
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
Ppu21I YACGTR 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 219
PsyI GACNNNGTC 1 cut(s) 456
RsaI GTAC 3 cut(s) 421, 442, 448
RsaNI GTAC 3 cut(s) 420, 441, 447
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 3 cut(s) 130, 219, 364
ScaI AGTACT 1 cut(s) 442
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 2 cut(s) 195, 491
SduI GDGCHC 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SnaBI TACGTA 1 cut(s) 85
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 2 cut(s) 402, 424
SsiI CCGC 2 cut(s) 13, 182
SspMI CTAG 3 cut(s) 312, 444, 531
StyD4I CCNGG 2 cut(s) 193, 489
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 2 cut(s) 87, 319
TaqI TCGA 3 cut(s) 64, 76, 267
TasI AATT 2 cut(s) 402, 424
TatI WGTACW 1 cut(s) 440
TfiI GAWTC 3 cut(s) 264, 386, 536
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseFI GTSAC 2 cut(s) 317, 496
Tsp45I GTSAC 2 cut(s) 317, 496
TspDTI ATGAA 4 cut(s) 17, 137, 138, 360
Tth111I GACNNNGTC 1 cut(s) 456
XbaI TCTAGA 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 3 cut(s) 312, 444, 531
ZraI GACGTC 1 cut(s) 317
ZrmI AGTACT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.