AT1G72360

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0023711
Physical Location & Seq
Forward (+)
27241696 .. 27242968
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72360.1

Sequence Viewer

Length: 636 bp
ATGTCTCAAAGCTTTGAACTTTATCCATGGCTAGGCTCAGCATCAGATGGGAAGAAGAAACAGAGCAGTCGGTACAAAGGAATCAGAAGAAGGCCTTGGGGAAGATGGGCGGCTGAGATACGTGATCCAATCAAAGGAGTTCGAGTTTGGCTCGGGACTTTCAACACAGCTGAAGAAGCTGCAAGAGCTTATGATCTTGAAGCTAAGAGAATCCGTGGAGCCAAAGCTAAGCTCAATTTCCCTAACGAATCCTCTGGAAAGAGGAAAGCCAAGGCTAAGACTGTGCAACAGGTAGAGGAGAATCATGAGGCTGATCTTGATGTGGCGGTGGTAAGCTCAGCGCCTAGTAGTAGCTGTCTTGATTTCTTGTGGGAGGAGAATAATCCGGACACGCTTCTGATTGATACACAATGGCTCGAAGATATCATCATGGGCGATGCGAATAAGAAACATGAACCTAATGATAGTGAAGAAGCCAACAACGTTGATGCTTCTCTGCTTTCTGAAGAGCTTCTTGCTTTTGAGAACCAGACCGAATATTTCTCGCAGATGCCTTTTACGGAGGGAAACTGTGATTCCTCAACGTCTCTGAGTAGTCTCTTTGATGGAGGCAATGACATGGGTCTATGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

211

Amino Acids

23.66

Weight (kDa)

4.83

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 23 - 73 2.9e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023711)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72360 AT1G72360 AT1G72360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 385
AciI CCGC 2 cut(s) 110, 326
AclI AACGTT 1 cut(s) 483
AclWI GGATC 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 192, 525
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 32, 134
AgsI TTSAA 3 cut(s) 17, 163, 200
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
Alw26I GTCTC 3 cut(s) 9, 591, 602
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 152
Aor13HI TCCGGA 1 cut(s) 385
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 510
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 630
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 166
BccI CCATC 3 cut(s) 41, 99, 599
BcoDI GTCTC 3 cut(s) 9, 591, 602
BfaI CTAG 2 cut(s) 32, 345
BfoI RGCGCY 1 cut(s) 344
BisI GCNGC 2 cut(s) 111, 180
BlpI GCTNAGC 3 cut(s) 37, 228, 337
BlsI GCNGC 2 cut(s) 112, 181
Bme18I GGWCC 1 cut(s) 630
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 630
BmiI GGNNCC 1 cut(s) 220
BmsI GCATC 4 cut(s) 50, 427, 478, 540
BoxI GACNNNNGTC 1 cut(s) 621
BplI GAGNNNNNCTC 2 cut(s) 135, 167
Bpu1102I GCTNAGC 3 cut(s) 37, 228, 337
BsaAI YACGTR 1 cut(s) 122
BsaJI CCNNGG 4 cut(s) 26, 95, 214, 270
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 134
Bse3DI GCAATG 1 cut(s) 619
BseAI TCCGGA 1 cut(s) 385
BseDI CCNNGG 4 cut(s) 26, 95, 214, 270
BseLI CCNNNNNNNGG 2 cut(s) 32, 134
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 4 cut(s) 51, 105, 351, 581
BseRI GAGGAG 2 cut(s) 311, 389
BseXI GCAGC 1 cut(s) 166
BshFI GGCC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 386
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 32, 134
BsmAI GTCTC 3 cut(s) 9, 591, 602
BsmBI CGTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 385
Bsp143I GATC 3 cut(s) 124, 193, 313
Bsp1720I GCTNAGC 3 cut(s) 37, 228, 337
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 2 cut(s) 110, 326
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 4 cut(s) 50, 106, 350, 582
BspEI TCCGGA 1 cut(s) 385
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 119
BspQI GCTCTTC 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 619
BssECI CCNNGG 4 cut(s) 26, 95, 214, 270
BssMI GATC 3 cut(s) 124, 193, 313
BssT1I CCWWGG 3 cut(s) 26, 95, 270
Bst4CI ACNGT 2 cut(s) 283, 572
Bst6I CTCTTC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 122
BstDEI CTNAG 7 cut(s) 37, 114, 204, 228, 276, 337, 590
BstDSI CCRYGG 2 cut(s) 26, 214
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 3 cut(s) 127, 196, 316
BstMAI GTCTC 3 cut(s) 9, 591, 602
BstMBI GATC 3 cut(s) 124, 193, 313
BstMWI GCNNNNNNNGC 2 cut(s) 176, 185
BstPAI GACNNNNGTC 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 2 cut(s) 26, 214
BtgZI GCGATG 1 cut(s) 450
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 630
Csp6I GTAC 1 cut(s) 73
CviAII CATG 5 cut(s) 27, 305, 430, 452, 619
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 7 cut(s) 37, 114, 204, 228, 276, 337, 590
DpnI GATC 3 cut(s) 126, 195, 315
DpnII GATC 3 cut(s) 124, 193, 313
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco130I CCWWGG 3 cut(s) 26, 95, 270
Eco147I AGGCCT 1 cut(s) 94
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 630
Eco57I CTGAAG 2 cut(s) 192, 525
Eco88I CYCGRG 1 cut(s) 152
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 3 cut(s) 26, 95, 270
ErhI CCWWGG 3 cut(s) 26, 95, 270
Esp3I CGTCTC 1 cut(s) 591
FaeI CATG 5 cut(s) 30, 308, 433, 455, 622
FaiI YATR 7 cut(s) 28, 192, 306, 431, 453, 620, 628
FalI AAGNNNNNCTT 4 cut(s) 79, 111, 498, 530
FaqI GGGAC 1 cut(s) 169
FatI CATG 5 cut(s) 26, 304, 429, 451, 618
Fnu4HI GCNGC 2 cut(s) 111, 180
Fsp4HI GCNGC 2 cut(s) 111, 180
FspBI CTAG 2 cut(s) 32, 345
GlaI GCGC 1 cut(s) 342
GluI GCNGC 2 cut(s) 111, 180
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 386
HhaI GCGC 1 cut(s) 343
Hin1II CATG 5 cut(s) 30, 308, 433, 455, 622
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 5 cut(s) 81, 210, 248, 301, 575
HpaII CCGG 1 cut(s) 386
Hpy188I TCNGA 5 cut(s) 46, 86, 399, 505, 591
Hpy188III TCNNGA 8 cut(s) 154, 197, 255, 305, 317, 359, 386, 633
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 2 cut(s) 283, 572
HpyCH4IV ACGT 3 cut(s) 121, 483, 584
HpyCH4V TGCA 2 cut(s) 182, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 185
HpyF3I CTNAG 7 cut(s) 37, 114, 204, 228, 276, 337, 590
HpySE526I ACGT 3 cut(s) 121, 483, 584
Hsp92II CATG 5 cut(s) 30, 308, 433, 455, 622
HspAI GCGC 1 cut(s) 341
Kpn2I TCCGGA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 124, 193, 313
LguI GCTCTTC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 4 cut(s) 240, 275, 399, 542
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 4 cut(s) 50, 427, 478, 540
MaeI CTAG 2 cut(s) 32, 345
MaeII ACGT 3 cut(s) 121, 483, 584
MalI GATC 3 cut(s) 126, 195, 315
MboI GATC 3 cut(s) 124, 193, 313
MboII GAAGA 8 cut(s) 64, 67, 99, 114, 185, 431, 482, 518
MluCI AATT 1 cut(s) 235
MnlI CCTC 8 cut(s) 255, 262, 289, 301, 367, 556, 589, 602
MroI TCCGGA 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 176, 185
NcoI CCATGG 1 cut(s) 26
NdeII GATC 3 cut(s) 124, 193, 313
NlaIII CATG 5 cut(s) 30, 308, 433, 455, 622
NlaIV GGNNCC 1 cut(s) 220
PagI TCATGA 1 cut(s) 304
PceI AGGCCT 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 5 cut(s) 81, 210, 248, 301, 575
PkrI GCNGC 2 cut(s) 112, 181
Ppu21I YACGTR 1 cut(s) 122
PshAI GACNNNNGTC 1 cut(s) 621
Psp1406I AACGTT 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 630
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 501
SatI GCNGC 2 cut(s) 111, 180
Sau3AI GATC 3 cut(s) 124, 193, 313
Sau96I GGNCC 1 cut(s) 630
SfaNI GCATC 4 cut(s) 50, 427, 478, 540
SinI GGWCC 1 cut(s) 630
Sse9I AATT 1 cut(s) 235
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 2 cut(s) 110, 326
SspI AATATT 1 cut(s) 539
SspMI CTAG 2 cut(s) 32, 345
StuI AGGCCT 1 cut(s) 94
StyI CCWWGG 3 cut(s) 26, 95, 270
TaaI ACNGT 2 cut(s) 283, 572
TaiI ACGT 3 cut(s) 124, 486, 587
TaqI TCGA 2 cut(s) 142, 417
TaqII GACCGA 1 cut(s) 548
TasI AATT 1 cut(s) 235
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 5 cut(s) 81, 210, 248, 301, 575
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 468
TspGWI ACGGA 2 cut(s) 203, 575
VpaK11BI GGWCC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 2 cut(s) 32, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.