AT1G74430
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0027340
Physical Location & Seq
Forward (+)
27975168 .. 27977434
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74430.2

Sequence Viewer

Length: 816 bp
ATGGGGAGGACGACGTGGTTCGACGTTGACGGGTTGAGGAAAGGAGAGTGGACGGCGGAGGAAGACCGGAAGCTCGTGGTTTACATCAACGAACACGGTCTAGGCGAGTGGGGTTCACTGCCTAAGAGAGCCGGTCTACAAAGATGTGGAAAGAGTTGTAGATTAAGATGGCTGAATTATTTGAGGCCTGGGATTAAAAGAGGCAAGTTCACTCCTCAGGAAGAAGAAGAAATCATCAAATACCATGCTCTTCTTGGAAACAGGTGGGCAGCAATAGCTAAGCAAATGCCAAACAGAACAGATAATGACATAAAGAACCATTGGAACTCATGCCTTAAGAAAAGACTTGCTAAAAAAGGAATCGATCCAATGACCCATGAGCCAACAACAACAACAAGCCTCACCGTCGATGTCACCTCCTCATCAACTACGTCGTCTCCTACACCGAGCCCTACTTCTTCTTCTTTTTCCTCCTGTTCCTCTACTGGCTCTGCACGTTTCCTTAACAAGCTCGCTGCTGGAATCTCGTCAAGAAAACACGGACTAGAGAGTATCAAGACAGTGATATTGGCAGAACAACCAAGAGAAGCCGTTGATGAAGAGAAGATGATGACAATTAACATGAAAGAGAAGGAATTGATTAGTTGTTACATGGAGATTGATGAGACGATGAGTATTGATGAACTACCTTGTGATGACTCGACGTCTGGCTTCGTGGCTTTTGACGACTACTCATTAATCGACCCATACAGAGACGGTGTGTACGTATCTGATTTCTACGATGAGACTGAACACCTTGACCTGTTCCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

271

Amino Acids

30.65

Weight (kDa)

5.62

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 18 - 43 1.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0027340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74430 AT1G74430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 707
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 704
AfaI GTAC 1 cut(s) 764
AflII CTTAAG 1 cut(s) 335
AhdI GACNNNNNGTC 1 cut(s) 703
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 73, 278, 511
AluI AGCT 3 cut(s) 73, 278, 511
Alw26I GTCTC 4 cut(s) 441, 659, 747, 779
AlwI GGATC 1 cut(s) 359
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 269, 515
AseI ATTAAT 1 cut(s) 737
AsuHPI GGTGA 2 cut(s) 394, 406
AxyI CCTNAGG 1 cut(s) 216
BanII GRGCYC 1 cut(s) 452
BauI CACGAG 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 281, 502
BccI CCATC 1 cut(s) 162
BceAI ACGGC 2 cut(s) 69, 575
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 4 cut(s) 441, 659, 747, 779
BfaI CTAG 2 cut(s) 101, 545
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 2 cut(s) 270, 516
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 2 cut(s) 271, 517
Bme1390I CCNGG 1 cut(s) 189
BmeRI GACNNNNNGTC 1 cut(s) 703
BmgBI CACGTC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 766
BsaHI GRCGYC 1 cut(s) 704
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 490
Bse21I CCTNAGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 2 cut(s) 204, 409
BseXI GCAGC 2 cut(s) 281, 502
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 363
BsiSI CCGG 2 cut(s) 67, 132
BsmAI GTCTC 4 cut(s) 441, 659, 747, 779
BsmBI CGTCTC 3 cut(s) 441, 659, 747
BsnI GGCC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 1 cut(s) 364
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 229
BspDI ATCGAT 1 cut(s) 363
BspPI GGATC 1 cut(s) 359
BspQI GCTCTTC 1 cut(s) 255
BspTI CTTAAG 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 490
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 1 cut(s) 364
BssNI GRCGYC 1 cut(s) 704
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 4 cut(s) 98, 406, 562, 758
Bst6I CTCTTC 2 cut(s) 255, 594
BstACI GRCGYC 1 cut(s) 704
BstAFI CTTAAG 1 cut(s) 335
BstBAI YACGTR 1 cut(s) 766
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 3 cut(s) 123, 216, 279
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 4 cut(s) 441, 659, 747, 779
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSNI TACGTA 1 cut(s) 766
BstV1I GCAGC 2 cut(s) 281, 502
BstV2I GAAGAC 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 363
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 1 cut(s) 187
BsuTUI ATCGAT 1 cut(s) 363
BtrI CACGTC 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 2 cut(s) 116, 567
Cac8I GCNNGC 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 131
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 1 cut(s) 763
CviAII CATG 5 cut(s) 245, 330, 377, 622, 652
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 3 cut(s) 123, 216, 279
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
DriI GACNNNNNGTC 1 cut(s) 703
Eam1104I CTCTTC 2 cut(s) 255, 594
Eam1105I GACNNNNNGTC 1 cut(s) 703
EarI CTCTTC 2 cut(s) 255, 594
EciI GGCGGA 1 cut(s) 71
Eco105I TACGTA 1 cut(s) 766
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 452
Eco81I CCTNAGG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 452
Esp3I CGTCTC 3 cut(s) 441, 659, 747
FaeI CATG 5 cut(s) 248, 333, 380, 625, 655
FaiI YATR 7 cut(s) 246, 311, 331, 378, 623, 653, 748
FatI CATG 5 cut(s) 244, 329, 376, 621, 651
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 270, 516
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 2 cut(s) 270, 516
FspBI CTAG 2 cut(s) 101, 545
GluI GCNGC 2 cut(s) 270, 516
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 67, 132
Hin1I GRCGYC 1 cut(s) 704
Hin1II CATG 5 cut(s) 248, 333, 380, 625, 655
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 3 cut(s) 360, 522, 698
HpaII CCGG 2 cut(s) 67, 132
HphI GGTGA 2 cut(s) 394, 406
Hpy166II GTNNAC 7 cut(s) 28, 51, 82, 116, 137, 210, 763
Hpy188I TCNGA 1 cut(s) 772
Hpy188III TCNNGA 3 cut(s) 218, 531, 556
Hpy8I GTNNAC 7 cut(s) 28, 51, 82, 116, 137, 210, 763
Hpy99I CGWCG 5 cut(s) 16, 26, 410, 436, 706
HpyAV CCTTC 1 cut(s) 625
HpyCH4III ACNGT 4 cut(s) 98, 406, 562, 758
HpyCH4IV ACGT 6 cut(s) 14, 24, 431, 496, 704, 765
HpyCH4V TGCA 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 3 cut(s) 123, 216, 279
HpySE526I ACGT 6 cut(s) 14, 24, 431, 496, 704, 765
Hsp92I GRCGYC 1 cut(s) 704
Hsp92II CATG 5 cut(s) 248, 333, 380, 625, 655
Kzo9I GATC 1 cut(s) 364
LguI GCTCTTC 1 cut(s) 255
Lsp1109I GCAGC 2 cut(s) 281, 502
MaeI CTAG 2 cut(s) 101, 545
MaeII ACGT 6 cut(s) 14, 24, 431, 496, 704, 765
MaeIII GTNAC 2 cut(s) 412, 647
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 9 cut(s) 74, 233, 236, 239, 242, 450, 453, 611, 616
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 3 cut(s) 175, 615, 635
MlyI GAGTC 1 cut(s) 692
MseI TTAA 6 cut(s) 164, 195, 336, 504, 618, 737
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 2 cut(s) 67, 132
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 1 cut(s) 364
NlaIII CATG 5 cut(s) 248, 333, 380, 625, 655
NmuCI GTSAC 1 cut(s) 412
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 762
PfeI GAWTC 2 cut(s) 360, 522
PkrI GCNGC 2 cut(s) 271, 517
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Ppu21I YACGTR 1 cut(s) 766
PshBI ATTAAT 1 cut(s) 737
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 6 cut(s) 164, 195, 336, 504, 618, 737
SatI GCNGC 2 cut(s) 270, 516
Sau3AI GATC 1 cut(s) 364
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SnaBI TACGTA 1 cut(s) 766
Sse9I AATT 3 cut(s) 175, 615, 635
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 56
SspMI CTAG 2 cut(s) 101, 545
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 4 cut(s) 98, 406, 562, 758
TaiI ACGT 6 cut(s) 17, 27, 434, 499, 707, 768
TaqI TCGA 5 cut(s) 21, 363, 408, 701, 741
TasI AATT 3 cut(s) 175, 615, 635
TfiI GAWTC 2 cut(s) 360, 522
Tru1I TTAA 6 cut(s) 164, 195, 336, 504, 618, 737
Tru9I TTAA 6 cut(s) 164, 195, 336, 504, 618, 737
TscAI CASTG 2 cut(s) 123, 567
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 269, 515
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 3 cut(s) 612, 638, 696
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 2 cut(s) 123, 567
Vha464I CTTAAG 1 cut(s) 335
VspI ATTAAT 1 cut(s) 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 2 cut(s) 101, 545
ZraI GACGTC 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.