AT1G76870
MYB Family

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0023879
Physical Location & Seq
Forward (+)
28856839 .. 28858851
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76870.2

Sequence Viewer

Length: 1158 bp
ATGGAAGGAAATTGCTCGCAAGGACGCTTTGATTCTCAAGTTTCTTCTATGAGAGATCTTCGTCCAAATGCTATAAATCAGAATCAGAAACAACACCATCCAAATTCTCGACAAGACTCAGGCTTTAACAATACTATGGATACACGTCACAACAATGTCGACAGAGGAAAGAAATCAATGAGTGAAGATGATGAACTATGTTTGTTAAGTAGTGATGGTCAAAACAAGTCCAAGGAAAACTCTCCTTGGCAACGTGTGAAATGGATGGATAAGATGGTGAAGCTAATGATAACTGCTCTTTCTTATATCGGTGAAGACTCTGGTTCTGATAAGAAATTTGCAGTTTTGCAGAAGAAAGGTAAGTGGAGATCAGTTTCTAAAGTCATGGATGAAAGAGGTTATCATGTTTCGCCGCAGCAATGTGAAGATAAGTTTAATGATCTTAATAAGCGGTATAAGAAGCTTAATGAGATGCTTGGTAGAGGAACTTCTTGTGAGGTTGTTGAGAATCCTTCACTCTTGGATAAGATTGATTACTTGAATGAGAAAGAGAAAGATGAAGTTAGGAGAATCATGAGCTCTAAACATCTTTTCTATGAAGAGATGTGTTCTTATCATAACGGAAACAGATTGCATTTGCCTCATGACCCTGCGGTACAGAGATCTCTTCACTTGATTACGCTTGGAAGCCGTGATGATCATGATAATGATGAACATGGGAAACACCAAAACGAAGATCTTGATGATGATGATGACTATGAGGAAGATCATGATGGAGCTTTAAGTGACCGTCCTTTGAAGAGGTTAAGACAAAGCCAGAGCCATGAAGATGTTGGTCATCCGAATAAGGGTTATGATGTCCCTTGCTTGCCTCGTTCCCAAGCTGATGTGAATCGAGGAATATCGCTAGATAGTAGGAAAGCTGCTGGCTTACAGAGGCAGCAGATTGAGTCTAAGTCTTTAGAGTTAGAAGGACGAAAGCTTCAGATTCAAGCGGAGATGATGGAACTGGAGAGACAACAATTCAAGTGGGAGGTGTTTAGTAAGAGAAGAGAGCAGAAGCTTGCGAAAATGAGAATGGAAAACGAAAGGATGAAACTTGAGAATGAAAGGATGAGTCTTGAACTGAAACGAATAGAGTTGGGTGCTAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

385

Amino Acids

44.96

Weight (kDa)

6.59

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 85 - 169 9.7e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76870 AT1G76870 AT1G76870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AciI CCGC 4 cut(s) 413, 451, 653, 995
AcsI RAATTY 2 cut(s) 103, 335
AcuI CTGAAG 1 cut(s) 968
AfaI GTAC 1 cut(s) 657
AfiI CCNNNNNNNGG 1 cut(s) 848
AflIII ACRYGT 2 cut(s) 143, 253
AgsI TTSAA 5 cut(s) 541, 799, 992, 1027, 1124
AjiI CACGTC 1 cut(s) 146
AluBI AGCT 8 cut(s) 283, 463, 579, 779, 884, 923, 982, 1063
AluI AGCT 8 cut(s) 283, 463, 579, 779, 884, 923, 982, 1063
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 1 cut(s) 1009
ApeKI GCWGC 3 cut(s) 415, 923, 940
ApoI RAATTY 2 cut(s) 103, 335
AsuHPI GGTGA 2 cut(s) 289, 323
BanII GRGCYC 1 cut(s) 581
BarI GAAGNNNNNNTAC 2 cut(s) 472, 504
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 581
BbvI GCAGC 3 cut(s) 427, 910, 952
BccI CCATC 6 cut(s) 105, 209, 259, 268, 767, 997
BceAI ACGGC 1 cut(s) 675
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 1009
BfaI CTAG 1 cut(s) 908
BfuI GTATCC 1 cut(s) 133
BglII AGATCT 3 cut(s) 55, 662, 736
BisI GCNGC 4 cut(s) 413, 416, 924, 941
BlsI GCNGC 4 cut(s) 414, 417, 925, 942
BmgBI CACGTC 1 cut(s) 146
BmsI GCATC 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 1031
BpuEI CTTGAG 2 cut(s) 21, 1121
BsaBI GATNNNNATC 1 cut(s) 891
BsaJI CCNNGG 2 cut(s) 231, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 848
Bse1I ACTGG 1 cut(s) 1014
Bse3DI GCAATG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 891
BseDI CCNNGG 2 cut(s) 231, 245
BseGI GGATG 6 cut(s) 97, 270, 394, 838, 1098, 1119
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 1 cut(s) 848
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 1014
BseXI GCAGC 3 cut(s) 427, 910, 952
BsiHKAI GWGCWC 1 cut(s) 581
BslFI GGGAC 1 cut(s) 845
BslI CCNNNNNNNGG 1 cut(s) 848
BsmAI GTCTC 1 cut(s) 1009
BsmFI GGGAC 1 cut(s) 845
Bsp1286I GDGCHC 1 cut(s) 581
Bsp143I GATC 7 cut(s) 55, 368, 439, 662, 697, 736, 766
BspACI CCGC 4 cut(s) 413, 451, 653, 995
BspCNI CTCAG 1 cut(s) 131
BspHI TCATGA 4 cut(s) 573, 643, 700, 769
BsrDI GCAATG 1 cut(s) 425
BsrI ACTGG 1 cut(s) 1014
BssECI CCNNGG 2 cut(s) 231, 245
BssMI GATC 7 cut(s) 55, 368, 439, 662, 697, 736, 766
BssT1I CCWWGG 2 cut(s) 231, 245
Bst4CI ACNGT 1 cut(s) 791
Bst6I CTCTTC 4 cut(s) 594, 672, 794, 1045
BstC8I GCNNGC 4 cut(s) 17, 869, 928, 1065
BstDEI CTNAG 2 cut(s) 118, 954
BstF5I GGATG 6 cut(s) 97, 270, 394, 838, 1098, 1119
BstKTI GATC 7 cut(s) 58, 371, 442, 665, 700, 739, 769
BstMAI GTCTC 1 cut(s) 1009
BstMBI GATC 7 cut(s) 55, 368, 439, 662, 697, 736, 766
BstV1I GCAGC 3 cut(s) 427, 910, 952
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 3 cut(s) 55, 662, 736
BstYI RGATCY 3 cut(s) 55, 662, 736
BsuI GTATCC 1 cut(s) 133
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 6 cut(s) 97, 270, 394, 838, 1098, 1119
Cac8I GCNNGC 4 cut(s) 17, 869, 928, 1065
CciI TCATGA 4 cut(s) 573, 643, 700, 769
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 656
CspCI CAANNNNNGTGG 2 cut(s) 1010, 1045
CviAII CATG 8 cut(s) 385, 404, 574, 644, 701, 716, 770, 824
CviQI GTAC 1 cut(s) 656
DdeI CTNAG 2 cut(s) 118, 954
DpnI GATC 7 cut(s) 57, 370, 441, 664, 699, 738, 768
DpnII GATC 7 cut(s) 55, 368, 439, 662, 697, 736, 766
Eam1104I CTCTTC 4 cut(s) 594, 672, 794, 1045
EarI CTCTTC 4 cut(s) 594, 672, 794, 1045
Ecl136II GAGCTC 1 cut(s) 579
Eco130I CCWWGG 2 cut(s) 231, 245
Eco24I GRGCYC 1 cut(s) 581
Eco53kI GAGCTC 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 968
EcoICRI GAGCTC 1 cut(s) 579
EcoT14I CCWWGG 2 cut(s) 231, 245
EcoT38I GRGCYC 1 cut(s) 581
ErhI CCWWGG 2 cut(s) 231, 245
FaeI CATG 8 cut(s) 388, 407, 577, 647, 704, 719, 773, 827
FaqI GGGAC 1 cut(s) 845
FatI CATG 8 cut(s) 384, 403, 573, 643, 700, 715, 769, 823
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 4 cut(s) 413, 416, 924, 941
FokI GGATG 6 cut(s) 84, 277, 401, 825, 1105, 1126
FriOI GRGCYC 1 cut(s) 581
Fsp4HI GCNGC 4 cut(s) 413, 416, 924, 941
FspBI CTAG 1 cut(s) 908
GluI GCNGC 4 cut(s) 413, 416, 924, 941
GsuI CTGGAG 1 cut(s) 1031
HgaI GACGC 1 cut(s) 33
Hin1II CATG 8 cut(s) 388, 407, 577, 647, 704, 719, 773, 827
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 3 cut(s) 461, 980, 1061
HphI GGTGA 2 cut(s) 289, 323
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 5 cut(s) 81, 87, 328, 843, 987
Hpy188III TCNNGA 7 cut(s) 108, 574, 644, 701, 740, 770, 1121
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 522, 965
HpyCH4III ACNGT 1 cut(s) 791
HpyCH4IV ACGT 2 cut(s) 145, 253
HpyCH4V TGCA 3 cut(s) 341, 349, 634
HpyF3I CTNAG 2 cut(s) 118, 954
HpySE526I ACGT 2 cut(s) 145, 253
Hsp92II CATG 8 cut(s) 388, 407, 577, 647, 704, 719, 773, 827
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 7 cut(s) 55, 368, 439, 662, 697, 736, 766
LmnI GCTCC 1 cut(s) 776
LpnPI CCDG 6 cut(s) 105, 306, 663, 830, 912, 995
Lsp1109I GCAGC 3 cut(s) 427, 910, 952
LweI GCATC 1 cut(s) 462
MaeI CTAG 1 cut(s) 908
MaeII ACGT 2 cut(s) 145, 253
MaeIII GTNAC 2 cut(s) 146, 785
MalI GATC 7 cut(s) 57, 370, 441, 664, 699, 738, 768
MboI GATC 7 cut(s) 55, 368, 439, 662, 697, 736, 766
MflI RGATCY 3 cut(s) 55, 662, 736
MhlI GDGCHC 1 cut(s) 581
MluCI AATT 5 cut(s) 10, 103, 335, 1022, 1151
MlyI GAGTC 4 cut(s) 110, 311, 959, 1126
MseI TTAA 7 cut(s) 126, 206, 435, 444, 465, 782, 806
MslI CAYNNNNRTG 3 cut(s) 153, 705, 828
NdeII GATC 7 cut(s) 55, 368, 439, 662, 697, 736, 766
NlaIII CATG 8 cut(s) 388, 407, 577, 647, 704, 719, 773, 827
NmuCI GTSAC 2 cut(s) 146, 785
PagI TCATGA 4 cut(s) 573, 643, 700, 769
PfeI GAWTC 6 cut(s) 32, 82, 508, 570, 892, 988
PkrI GCNGC 4 cut(s) 414, 417, 925, 942
PleI GAGTC 4 cut(s) 110, 311, 958, 1125
PpsI GAGTC 4 cut(s) 110, 311, 958, 1125
Psp124BI GAGCTC 1 cut(s) 581
PsuI RGATCY 3 cut(s) 55, 662, 736
RsaI GTAC 1 cut(s) 657
RsaNI GTAC 1 cut(s) 656
RseI CAYNNNNRTG 3 cut(s) 153, 705, 828
SacI GAGCTC 1 cut(s) 581
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 7 cut(s) 126, 206, 435, 444, 465, 782, 806
SatI GCNGC 4 cut(s) 413, 416, 924, 941
Sau3AI GATC 7 cut(s) 55, 368, 439, 662, 697, 736, 766
SchI GAGTC 4 cut(s) 110, 311, 959, 1126
SduI GDGCHC 1 cut(s) 581
SfaNI GCATC 1 cut(s) 462
SmiMI CAYNNNNRTG 3 cut(s) 153, 705, 828
SmlI CTYRAG 2 cut(s) 36, 1100
SmoI CTYRAG 2 cut(s) 36, 1100
Sse9I AATT 5 cut(s) 10, 103, 335, 1022, 1151
SsiI CCGC 4 cut(s) 413, 451, 653, 995
SspMI CTAG 1 cut(s) 908
SstI GAGCTC 1 cut(s) 581
StyI CCWWGG 2 cut(s) 231, 245
TaaI ACNGT 1 cut(s) 791
TaiI ACGT 2 cut(s) 148, 256
TaqI TCGA 3 cut(s) 109, 159, 895
TasI AATT 5 cut(s) 10, 103, 335, 1022, 1151
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 6 cut(s) 32, 82, 508, 570, 892, 988
Tru1I TTAA 7 cut(s) 126, 206, 435, 444, 465, 782, 806
Tru9I TTAA 7 cut(s) 126, 206, 435, 444, 465, 782, 806
TseFI GTSAC 2 cut(s) 146, 785
TseI GCWGC 3 cut(s) 415, 923, 940
Tsp45I GTSAC 2 cut(s) 146, 785
TspDTI ATGAA 8 cut(s) 207, 405, 573, 612, 726, 840, 1109, 1122
TspGWI ACGGA 1 cut(s) 636
XapI RAATTY 2 cut(s) 103, 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.