AT1G78200

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020150
Physical Location & Seq
Forward (+)
29419466 .. 29421922
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78200.4

Sequence Viewer

Length: 852 bp
ATGCCCAAGATCTGCTGCTCTCGTTCCGCTACACAAGTTGTGGTAGCACAAAAATCAAACTCGGGTAAAGGAAGAAACGGTGAAGGAGGAATCAAGTATGGATTTAGTTTGATAAAAGGGAAATCTAACCATTCAATGGAGGATTATCATGTTGCTAAGTTTACCAATTTCAATGGCAATGAATTGGGGCTTTTTGCAATCTTTGATGGTCATAAAGGTGATCATGTTGCTGCTTATCTGCAGAAACATCTCTTCTCTAATATCCTTAAAGATGGAGAGTTCTTGGTTGATCCTCGAAGAGCAATTGCGAAAGCTTATGAGAATACAGATCAAAAGATTTTAGCAGATAATAGAACGGATTTAGAGAGTGGTGGTTCGACTGCTGTGACTGCGATTTTGATCAATGGGAAAGCTTTGTGGATAGCTAATGTTGGTGATTCACGAGCTATTGTTTCTAGTCGAGGTAAAGCAAAACAGATGAGTGTTGATCATGATCCTGATGATGATACTGAGAGGAGTATGATTGAGAGTAAAGGTGGATTTGTGACCAACAGACCAGGTGATGTTCCTCGAGTGAACGGTTTGTTAGCGGTCTCTCGTGTCTTTGGAGATAAAAACCTTAAAGCATATTTGAACTCAGAGCCTGAGATTAAGGACGTAACCATTGATAGTCACACAGATTTTCTTATTCTGGCTAGTGACGGTATTTCGAAGGTGATGTCAAACCAAGAAGCAGTTGATGTAGCTAAGAAGTTGAAAGATCCAAAGGAAGCGGCGAGGCAAGTAGTTGCTGAAGCATTGAAAAGAAACAGCAAGGATGACATATCTTGCATTGTTGTCCGGTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04011 map04011
Pfam Domains
Protein Families
PP2C

Protein Analysis

283

Amino Acids

30.85

Weight (kDa)

8.8

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 1 - 230 6e-57 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78200 AT1G78200 AT1G78200 AT1G78200 AT1G78200
prunus_persica Prupe.1G000400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AciI CCGC 3 cut(s) 27, 590, 773
AclWI GGATC 3 cut(s) 284, 488, 755
AcuI CTGAAG 1 cut(s) 813
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 5 cut(s) 135, 172, 634, 757, 802
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 5 cut(s) 314, 413, 425, 446, 746
AluI AGCT 5 cut(s) 314, 413, 425, 446, 746
Alw26I GTCTC 1 cut(s) 598
AlwI GGATC 3 cut(s) 284, 488, 755
AlwNI CAGNNNCTG 1 cut(s) 644
Ama87I CYCGRG 2 cut(s) 61, 570
ApeKI GCWGC 2 cut(s) 15, 230
ArsI GACNNNNNNTTYG 4 cut(s) 379, 411, 704, 736
AsuHPI GGTGA 5 cut(s) 92, 230, 446, 572, 727
AsuII TTCGAA 1 cut(s) 710
AvaI CYCGRG 2 cut(s) 61, 570
BauI CACGAG 2 cut(s) 441, 597
BbvI GCAGC 2 cut(s) 2, 217
BccI CCATC 2 cut(s) 200, 266
BciT130I CCWGG 1 cut(s) 558
BclI TGATCA 3 cut(s) 220, 399, 487
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 2 cut(s) 456, 696
BfmI CTRYAG 1 cut(s) 239
BglII AGATCT 1 cut(s) 9
BisI GCNGC 3 cut(s) 16, 231, 774
BlsI GCNGC 3 cut(s) 17, 232, 775
Bme1390I CCNGG 1 cut(s) 558
BmeT110I CYCGRG 2 cut(s) 61, 570
BmrFI CCNGG 1 cut(s) 558
Bpu14I TTCGAA 1 cut(s) 710
BsaBI GATNNNNATC 2 cut(s) 398, 492
BsaI GGTCTC 1 cut(s) 598
BsaWI WCCGGW 1 cut(s) 840
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 184
Bse8I GATNNNNATC 2 cut(s) 398, 492
BseBI CCWGG 1 cut(s) 558
BseGI GGATG 1 cut(s) 823
BseJI GATNNNNATC 2 cut(s) 398, 492
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 3 cut(s) 501, 636, 651
BseRI GAGGAG 1 cut(s) 529
BseXI GCAGC 2 cut(s) 2, 217
BsiHKCI CYCGRG 2 cut(s) 61, 570
BsiSI CCGG 1 cut(s) 841
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 598
Bso31I GGTCTC 1 cut(s) 598
BsoBI CYCGRG 2 cut(s) 61, 570
Bsp119I TTCGAA 1 cut(s) 710
Bsp143I GATC 8 cut(s) 9, 220, 289, 328, 399, 487, 493, 760
BspACI CCGC 3 cut(s) 27, 590, 773
BspCNI CTCAG 3 cut(s) 502, 637, 650
BspHI TCATGA 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 243
BspPI GGATC 3 cut(s) 284, 488, 755
BspQI GCTCTTC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 598
BsrDI GCAATG 1 cut(s) 184
BssMI GATC 8 cut(s) 9, 220, 289, 328, 399, 487, 493, 760
BssSI CACGAG 2 cut(s) 441, 597
Bst2BI CACGAG 2 cut(s) 441, 597
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 3 cut(s) 80, 581, 704
Bst6I CTCTTC 2 cut(s) 257, 292
BstBI TTCGAA 1 cut(s) 710
BstDEI CTNAG 5 cut(s) 156, 510, 637, 645, 747
BstF5I GGATG 1 cut(s) 823
BstKTI GATC 8 cut(s) 12, 223, 292, 331, 402, 490, 496, 763
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 8 cut(s) 9, 220, 289, 328, 399, 487, 493, 760
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 2, 217
BstX2I RGATCY 2 cut(s) 9, 760
BstYI RGATCY 2 cut(s) 9, 760
BtsCI GGATG 1 cut(s) 823
CaiI CAGNNNCTG 1 cut(s) 644
CciI TCATGA 1 cut(s) 490
CsiI ACCWGGT 1 cut(s) 556
CviAII CATG 3 cut(s) 149, 224, 491
CviJI RGCY 8 cut(s) 190, 314, 413, 425, 446, 643, 695, 746
CviKI_1 RGCY 8 cut(s) 190, 314, 413, 425, 446, 643, 695, 746
DdeI CTNAG 5 cut(s) 156, 510, 637, 645, 747
DpnI GATC 8 cut(s) 11, 222, 291, 330, 401, 489, 495, 762
DpnII GATC 8 cut(s) 9, 220, 289, 328, 399, 487, 493, 760
Eam1104I CTCTTC 2 cut(s) 257, 292
EarI CTCTTC 2 cut(s) 257, 292
Eco31I GGTCTC 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 813
Eco88I CYCGRG 2 cut(s) 61, 570
EcoRII CCWGG 1 cut(s) 556
FaeI CATG 3 cut(s) 152, 227, 494
FaiI YATR 9 cut(s) 99, 150, 213, 225, 318, 492, 521, 628, 824
FatI CATG 3 cut(s) 148, 223, 490
FbaI TGATCA 3 cut(s) 220, 399, 487
Fnu4HI GCNGC 3 cut(s) 16, 231, 774
FokI GGATG 1 cut(s) 830
Fsp4HI GCNGC 3 cut(s) 16, 231, 774
FspBI CTAG 2 cut(s) 456, 696
GluI GCNGC 3 cut(s) 16, 231, 774
HapII CCGG 1 cut(s) 841
Hin1II CATG 3 cut(s) 152, 227, 494
HindIII AAGCTT 2 cut(s) 312, 411
HinfI GANTC 2 cut(s) 90, 437
HpaII CCGG 1 cut(s) 841
HphI GGTGA 5 cut(s) 92, 230, 446, 572, 727
Hpy166II GTNNAC 2 cut(s) 162, 577
Hpy188I TCNGA 1 cut(s) 640
Hpy188III TCNNGA 3 cut(s) 441, 491, 497
Hpy8I GTNNAC 2 cut(s) 162, 577
HpyAV CCTTC 2 cut(s) 77, 706
HpyCH4III ACNGT 3 cut(s) 80, 581, 704
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 3 cut(s) 197, 241, 831
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 5 cut(s) 156, 510, 637, 645, 747
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 3 cut(s) 152, 227, 494
Ksp22I TGATCA 3 cut(s) 220, 399, 487
Kzo9I GATC 8 cut(s) 9, 220, 289, 328, 399, 487, 493, 760
LguI GCTCTTC 1 cut(s) 292
LpnPI CCDG 5 cut(s) 510, 543, 570, 657, 677
Lsp1109I GCAGC 2 cut(s) 2, 217
MabI ACCWGGT 1 cut(s) 556
MaeI CTAG 2 cut(s) 456, 696
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 5 cut(s) 385, 544, 658, 671, 698
MalI GATC 8 cut(s) 11, 222, 291, 330, 401, 489, 495, 762
MboI GATC 8 cut(s) 9, 220, 289, 328, 399, 487, 493, 760
MboII GAAGA 3 cut(s) 84, 244, 309
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 2 cut(s) 9, 760
MluCI AATT 3 cut(s) 166, 182, 303
MnlI CCTC 7 cut(s) 80, 133, 303, 455, 507, 579, 771
MseI TTAA 3 cut(s) 267, 621, 651
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 1 cut(s) 841
MspR9I CCNGG 1 cut(s) 558
MunI CAATTG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 558
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 8 cut(s) 9, 220, 289, 328, 399, 487, 493, 760
NlaIII CATG 3 cut(s) 152, 227, 494
NmuCI GTSAC 4 cut(s) 385, 544, 671, 698
NspV TTCGAA 1 cut(s) 710
PaeR7I CTCGAG 1 cut(s) 570
PagI TCATGA 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 90, 437
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 3 cut(s) 17, 232, 775
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspXI VCTCGAGB 1 cut(s) 570
PstI CTGCAG 1 cut(s) 243
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 2 cut(s) 9, 760
RseI CAYNNNNRTG 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 292
SaqAI TTAA 3 cut(s) 267, 621, 651
SatI GCNGC 3 cut(s) 16, 231, 774
Sau3AI GATC 8 cut(s) 9, 220, 289, 328, 399, 487, 493, 760
ScrFI CCNGG 1 cut(s) 558
SexAI ACCWGGT 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 239
Sfr274I CTCGAG 1 cut(s) 570
SfuI TTCGAA 1 cut(s) 710
SlaI CTCGAG 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
Sse9I AATT 3 cut(s) 166, 182, 303
SsiI CCGC 3 cut(s) 27, 590, 773
SspMI CTAG 2 cut(s) 456, 696
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 3 cut(s) 80, 581, 704
TaiI ACGT 1 cut(s) 660
TaqI TCGA 5 cut(s) 295, 377, 460, 571, 710
TasI AATT 3 cut(s) 166, 182, 303
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 2 cut(s) 90, 437
Tru1I TTAA 3 cut(s) 267, 621, 651
Tru9I TTAA 3 cut(s) 267, 621, 651
TseFI GTSAC 4 cut(s) 385, 544, 671, 698
TseI GCWGC 2 cut(s) 15, 230
Tsp45I GTSAC 4 cut(s) 385, 544, 671, 698
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 570
XspI CTAG 2 cut(s) 456, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.