AT1G80060

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020145
Physical Location & Seq
Reverse (-)
30114449 .. 30117645
3197 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80060.3

Sequence Viewer

Length: 732 bp
ATGCGAGAAGAGCATAGTCCGGTTAGGGACGGTCGTCGAAGTGGAGGACTGAGGTCGTTGATAGATCCACGCTTCTTGTCATCGTTTGCTTTAAACGACGGTGGTTCGATTTCTGGACGGAGATCTTCCTACCTGAAACTTCCTCCTCAGGGTCGTATCAAGCTTTCCGTCGTTAAGCTCAACGGCTCCCTTTTCGATGTGGAAGTTGCAAAGGATTGCTCAGTGGCAGAGCTCAAAAGAGCTGTGGAACAAGTATTCACCATTTCTCCTCTGGAAGGTCACGGCATGATTTCATGGTCTCACGTCTGGGGTCATTTTTGCTTGTGTTATCGAGACCAGAGATTAGTCAATGACAAGACTAGCATCCGTTATCTCGGTCTCAATGATGGAGACCAATTACATTTCGTAAGGCATTTGTCGATAGACCACTCTCCTATGAACAAAAGATCCAAGAGCCCGAGTTGCAAGCGGTACCTCGAGTTGGATGTGTCATCCATTGTCAACGAAATCCAAATACAAAACCAAAACCAGAACGGTGTGGATGATGTAGCTGAGAAGTGTTATCCAGGAGCACAAGACGAGTTACCGGCAGCAGAATCCAGACTAGTTAACTTAATTAAAGGATGGTTGCCATATGCTGGACGTTGGGGAGTTTCCAGAAAAGGACCCGAGTGTCGCAGTGGTCCCTCCAGATTTTCTTTGAAGCATTTCGGTGGCAGACCCAAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

243

Amino Acids

27.29

Weight (kDa)

9.46

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 53 - 139 7.6e-23 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80060 AT1G80060 AT1G80060 AT1G80060 AT1G80060
pyrus_communis pycom10g02850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 672
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 1 cut(s) 471
AccB7I CCANNNNNTGG 1 cut(s) 638
AciI CCGC 1 cut(s) 469
AclWI GGATC 2 cut(s) 59, 441
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 4 cut(s) 149, 275, 481, 638
AgsI TTSAA 1 cut(s) 703
AhlI ACTAGT 1 cut(s) 604
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 1 cut(s) 565
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 5 cut(s) 163, 178, 232, 242, 551
AluI AGCT 5 cut(s) 163, 178, 232, 242, 551
Alw21I GWGCWC 2 cut(s) 234, 574
Alw26I GTCTC 4 cut(s) 303, 327, 383, 384
AlwI GGATC 2 cut(s) 59, 441
Ama87I CYCGRG 3 cut(s) 457, 476, 668
ApeKI GCWGC 1 cut(s) 590
Asp700I GAANNNNTTC 1 cut(s) 707
Asp718I GGTACC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 665, 683
AsuHPI GGTGA 1 cut(s) 250
AvaI CYCGRG 3 cut(s) 457, 476, 668
AvaII GGWCC 2 cut(s) 665, 683
AxyI CCTNAGG 1 cut(s) 147
BanI GGYRCC 1 cut(s) 471
BanII GRGCYC 2 cut(s) 234, 458
Bbv12I GWGCWC 2 cut(s) 234, 574
BbvI GCAGC 1 cut(s) 602
BccI CCATC 2 cut(s) 380, 618
BceAI ACGGC 2 cut(s) 199, 298
BciT130I CCWGG 1 cut(s) 567
BcoDI GTCTC 4 cut(s) 303, 327, 383, 384
BcuI ACTAGT 1 cut(s) 604
BfaI CTAG 2 cut(s) 360, 605
BglII AGATCT 1 cut(s) 122
BisI GCNGC 1 cut(s) 591
BlsI GCNGC 1 cut(s) 592
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 2 cut(s) 665, 683
BmeT110I CYCGRG 3 cut(s) 457, 476, 668
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 665, 683
BmiI GGNNCC 4 cut(s) 187, 473, 667, 685
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 372
BoxI GACNNNNGTC 2 cut(s) 33, 52
BpmI CTGGAG 1 cut(s) 673
BsaI GGTCTC 4 cut(s) 303, 327, 383, 384
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 275, 481, 638
Bse118I RCCGGY 1 cut(s) 586
Bse21I CCTNAGG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 567
BseGI GGATG 5 cut(s) 363, 490, 491, 547, 629
BseLI CCNNNNNNNGG 4 cut(s) 149, 275, 481, 638
BseMII CTCAG 4 cut(s) 41, 161, 234, 543
BseRI GAGGAG 2 cut(s) 135, 258
BseXI GCAGC 1 cut(s) 602
Bsh1285I CGRYCG 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 471
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 234, 574
BsiHKCI CYCGRG 3 cut(s) 457, 476, 668
BsiSI CCGG 2 cut(s) 20, 587
BslFI GGGAC 2 cut(s) 41, 669
BslI CCNNNNNNNGG 4 cut(s) 149, 275, 481, 638
BsmAI GTCTC 4 cut(s) 303, 327, 383, 384
BsmFI GGGAC 2 cut(s) 41, 669
Bso31I GGTCTC 4 cut(s) 303, 327, 383, 384
BsoBI CYCGRG 3 cut(s) 457, 476, 668
Bsp1286I GDGCHC 3 cut(s) 234, 458, 574
Bsp143I GATC 3 cut(s) 64, 122, 446
BspACI CCGC 1 cut(s) 469
BspCNI CTCAG 4 cut(s) 42, 160, 233, 544
BspLI GGNNCC 4 cut(s) 187, 473, 667, 685
BspPI GGATC 2 cut(s) 59, 441
BspQI GCTCTTC 1 cut(s) 3
BspT107I GGYRCC 1 cut(s) 471
BspTNI GGTCTC 4 cut(s) 303, 327, 383, 384
BsrFI RCCGGY 1 cut(s) 586
BssAI RCCGGY 1 cut(s) 586
BssMI GATC 3 cut(s) 64, 122, 446
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 3 cut(s) 32, 101, 536
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 4 cut(s) 50, 147, 220, 552
BstENI CCTNNNNNAGG 1 cut(s) 273
BstF5I GGATG 5 cut(s) 363, 490, 491, 547, 629
BstKTI GATC 3 cut(s) 67, 125, 449
BstMAI GTCTC 4 cut(s) 303, 327, 383, 384
BstMBI GATC 3 cut(s) 64, 122, 446
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 10, 462
BstNI CCWGG 1 cut(s) 567
BstPAI GACNNNNGTC 2 cut(s) 33, 52
BstSCI CCNGG 1 cut(s) 565
BstV1I GCAGC 1 cut(s) 602
BstX2I RGATCY 3 cut(s) 64, 122, 446
BstYI RGATCY 3 cut(s) 64, 122, 446
Bsu36I CCTNAGG 1 cut(s) 147
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 5 cut(s) 363, 490, 491, 547, 629
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 2 cut(s) 228, 685
Cac8I GCNNGC 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 586
Cfr13I GGNCC 2 cut(s) 665, 683
Csp6I GTAC 1 cut(s) 472
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 2 cut(s) 286, 294
CviJI RGCY 7 cut(s) 163, 178, 186, 232, 242, 456, 551
CviKI_1 RGCY 7 cut(s) 163, 178, 186, 232, 242, 456, 551
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 4 cut(s) 50, 147, 220, 552
DpnI GATC 3 cut(s) 66, 124, 448
DpnII GATC 3 cut(s) 64, 122, 446
DraI TTTAAA 1 cut(s) 93
DrdI GACNNNNNNGTC 1 cut(s) 672
DseDI GACNNNNNNGTC 1 cut(s) 672
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 2 cut(s) 234, 458
Eco31I GGTCTC 4 cut(s) 303, 327, 383, 384
Eco47I GGWCC 2 cut(s) 665, 683
Eco53kI GAGCTC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 147
Eco88I CYCGRG 3 cut(s) 457, 476, 668
EcoICRI GAGCTC 1 cut(s) 232
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 565
EcoT38I GRGCYC 2 cut(s) 234, 458
FaeI CATG 2 cut(s) 289, 297
FaiI YATR 6 cut(s) 15, 287, 295, 437, 634, 636
FaqI GGGAC 2 cut(s) 41, 669
FatI CATG 2 cut(s) 285, 293
FauNDI CATATG 1 cut(s) 634
Fnu4HI GCNGC 1 cut(s) 591
FokI GGATG 5 cut(s) 350, 478, 497, 554, 636
FriOI GRGCYC 2 cut(s) 234, 458
Fsp4HI GCNGC 1 cut(s) 591
FspBI CTAG 2 cut(s) 360, 605
GluI GCNGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 673
HapII CCGG 2 cut(s) 20, 587
Hin1II CATG 2 cut(s) 289, 297
HincII GTYRAC 2 cut(s) 502, 610
HindII GTYRAC 2 cut(s) 502, 610
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 596
HpaI GTTAAC 1 cut(s) 610
HpaII CCGG 2 cut(s) 20, 587
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 502, 610
Hpy188III TCNNGA 6 cut(s) 114, 272, 332, 600, 657, 690
Hpy8I GTNNAC 2 cut(s) 502, 610
Hpy99I CGWCG 3 cut(s) 39, 101, 173
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 3 cut(s) 32, 101, 536
HpyCH4IV ACGT 2 cut(s) 303, 643
HpyCH4V TGCA 2 cut(s) 209, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 462
HpyF3I CTNAG 4 cut(s) 50, 147, 220, 552
HpySE526I ACGT 2 cut(s) 303, 643
Hsp92II CATG 2 cut(s) 289, 297
KpnI GGTACC 1 cut(s) 475
KspAI GTTAAC 1 cut(s) 610
Kzo9I GATC 3 cut(s) 64, 122, 446
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 191, 569
Lsp1109I GCAGC 1 cut(s) 602
LweI GCATC 1 cut(s) 372
MaeI CTAG 2 cut(s) 360, 605
MaeII ACGT 2 cut(s) 303, 643
MaeIII GTNAC 2 cut(s) 278, 582
MalI GATC 3 cut(s) 66, 124, 448
MboI GATC 3 cut(s) 64, 122, 446
MboII GAAGA 2 cut(s) 20, 117
MflI RGATCY 3 cut(s) 64, 122, 446
MhlI GDGCHC 3 cut(s) 234, 458, 574
MluCI AATT 2 cut(s) 395, 615
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 7 cut(s) 38, 45, 153, 156, 279, 485, 697
MroXI GAANNNNTTC 1 cut(s) 707
MseI TTAA 5 cut(s) 92, 174, 609, 614, 618
MslI CAYNNNNRTG 1 cut(s) 711
MspI CCGG 2 cut(s) 20, 587
MspR9I CCNGG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 10, 462
NdeI CATATG 1 cut(s) 634
NdeII GATC 3 cut(s) 64, 122, 446
NlaIII CATG 2 cut(s) 289, 297
NlaIV GGNNCC 4 cut(s) 187, 473, 667, 685
NmuCI GTSAC 1 cut(s) 278
PacI TTAATTAA 1 cut(s) 618
PaeR7I CTCGAG 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 3
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 638
PfoI TCCNGGA 1 cut(s) 565
PkrI GCNGC 1 cut(s) 592
PpuMI RGGWCCY 1 cut(s) 665
PshAI GACNNNNGTC 2 cut(s) 33, 52
Psp124BI GAGCTC 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 4 cut(s) 187, 473, 667, 685
PspPI GGNCC 2 cut(s) 665, 683
PspPPI RGGWCCY 1 cut(s) 665
PspXI VCTCGAGB 1 cut(s) 476
PsuI RGATCY 3 cut(s) 64, 122, 446
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 711
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 5 cut(s) 92, 174, 609, 614, 618
SatI GCNGC 1 cut(s) 591
Sau3AI GATC 3 cut(s) 64, 122, 446
Sau96I GGNCC 2 cut(s) 665, 683
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 3 cut(s) 234, 458, 574
SfaNI GCATC 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 476
SinI GGWCC 2 cut(s) 665, 683
SlaI CTCGAG 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SpeI ACTAGT 1 cut(s) 604
Sse9I AATT 2 cut(s) 395, 615
SsiI CCGC 1 cut(s) 469
SspMI CTAG 2 cut(s) 360, 605
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 565
TaaI ACNGT 3 cut(s) 32, 101, 536
TaiI ACGT 2 cut(s) 306, 646
TaqI TCGA 6 cut(s) 37, 107, 195, 331, 419, 477
TaqII GACCGA 1 cut(s) 365
TasI AATT 2 cut(s) 395, 615
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 5 cut(s) 92, 174, 609, 614, 618
Tru9I TTAA 5 cut(s) 92, 174, 609, 614, 618
TscAI CASTG 2 cut(s) 228, 685
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 1 cut(s) 590
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 282, 452
TspGWI ACGGA 3 cut(s) 133, 157, 356
TspRI CASTG 2 cut(s) 228, 685
Van91I CCANNNNNTGG 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 665, 683
XagI CCTNNNNNAGG 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 2 cut(s) 360, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.