AT2G04800
MYB Family

At2g29880-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
1687173 .. 1687939
767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04800.2

Sequence Viewer

Length: 237 bp
ATGGGATCTAAACCTAGCTCGCTGGCTGATGAAGTAGCCATTATTGTTGAGCAAGTAGACAAGGTTATGGGGATGGTTTTTTGGTGCCCCCTCTACTGGGAATCTATAGAACTCCTTGCAAAAGATGAGGTTTCACGAGCCATATTTTATGGACTAACAGAAGGATGTAAGCTTGATTATCTTAAATACAAGACAAAAGCTTCCATGGTCCCAGAAATGACACGGTTTTATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.94

Weight (kDa)

4.99

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04800 AT2G04800 AT2G04800 AT2G04800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 57
AclWI GGATC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 96, 97
AluBI AGCT 3 cut(s) 18, 172, 200
AluI AGCT 3 cut(s) 18, 172, 200
AlwI GGATC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 208
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 84
BauI CACGAG 1 cut(s) 135
BccI CCATC 1 cut(s) 67
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 86, 210
BmrI ACTGGG 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 97
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 78, 170
BseLI CCNNNNNNNGG 2 cut(s) 96, 97
BseNI ACTGG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 84
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 96, 97
BsmFI GGGAC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 86, 210
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 20, 24
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 78, 170
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 2 cut(s) 78, 170
Cac8I GCNNGC 2 cut(s) 20, 24
Cfr13I GGNCC 1 cut(s) 208
CviAII CATG 1 cut(s) 205
CviJI RGCY 6 cut(s) 18, 26, 38, 140, 172, 200
CviKI_1 RGCY 6 cut(s) 18, 26, 38, 140, 172, 200
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 208
FaiI YATR 6 cut(s) 68, 107, 143, 150, 206, 231
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 204
FblI GTMKAC 1 cut(s) 57
FokI GGATG 2 cut(s) 85, 177
FspBI CTAG 1 cut(s) 15
Hin1II CATG 1 cut(s) 208
HindIII AAGCTT 2 cut(s) 170, 198
HinfI GANTC 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 119
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 8, 82, 225
MaeI CTAG 1 cut(s) 15
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 89
MnlI CCTC 2 cut(s) 101, 121
MseI TTAA 2 cut(s) 183, 235
NcoI CCATGG 1 cut(s) 204
NdeII GATC 1 cut(s) 5
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 86, 210
PfeI GAWTC 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 86, 210
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 5
SaqAI TTAA 2 cut(s) 183, 235
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 1 cut(s) 208
SduI GDGCHC 1 cut(s) 89
SetI ASST 6 cut(s) 16, 20, 66, 132, 174, 202
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 208
SspMI CTAG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 225
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 183, 235
Tru9I TTAA 2 cut(s) 183, 235
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.