Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026739

Physical Location & Seq

Genomic Coordinates Forward (+)

3187068 .. 3188422

Gene Structure 1355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G07565.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGATAATAAATTTGGTCGTTGTGGTCGGACTCTATTGTGGATTTATGACCACATTCTACATAGGGCCTTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGACGAAGGAGAAGAAGGAACCGAGAAGAAAGTATCAGCAAGAACATGTTTTATTACGGGACAGCTCATGATGTTCATATCAATCTATTATGCGCCTATGCATTTAGCATTGTGTAGACCTTATACAATAACTGTTCTAGCTCTACCGTATCTTTTGTTTCATTTATTATGGAACAATCACAAACATTTTTTTTATTATGGATCTACTACCAGAAATAAAATGTGTAATCTTCGCATTCAATGTTTTCGTTGGTTGGTTAATTGGTCACATTTTATTCCTGCAAAGGTTATTAGATCTAATAAGTATAAGTTCTTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGCAGAATACCATCACCCATTTTTACTAAGAAACTTAAAGGAACCTCAGAAAGGGGTGTGACTAAACAGGAGCAAGAGGTATCCATTGAAGAAACCCCTTTTCCTTCTATTTTTTTGAAAGAAGGGGAAGATCTGGACAAAATCGATAAAATGAAAGAAATCCTAGTGAATGGAAAAGACAAAATTAATAAAGATGATGAATTACACGTTCGAACATACTATAACTATAAAACTGTTTCTGAAAACCAATATGGAAATAAAGAAAATTCGAATTTAGATTTTTTCAAAAAAACAAAAAAGGATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

254

Amino Acids

29.96

Weight (kDa)

9.43

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	7 - 117	1.1e-65	Ycf1
Ycf1	PF05758	130 - 253	1.6e-25	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0026739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07565
rosa_chinensis	RchiOBHm_Chr2g0135101

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	4 cut(s)	13, 436, 721, 727
AfiI	CCNNNNNNNGG	2 cut(s)	97, 507
AflIII	ACRYGT	2 cut(s)	149, 661
AgsI	TTSAA	4 cut(s)	344, 545, 574, 742
AluBI	AGCT	3 cut(s)	95, 169, 245
AluI	AGCT	3 cut(s)	95, 169, 245
Alw21I	GWGCWC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	1 cut(s)	68
ApoI	RAATTY	4 cut(s)	13, 436, 721, 727
AseI	ATTAAT	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	462
AsuII	TTCGAA	2 cut(s)	667, 725
AvaI	CYCGRG	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	1 cut(s)	475
BciVI	GTATCC	1 cut(s)	547
BfaI	CTAG	2 cut(s)	242, 620
BfuI	GTATCC	1 cut(s)	547
BglII	AGATCT	2 cut(s)	398, 586
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	124, 499
Bpu14I	TTCGAA	2 cut(s)	667, 725
Bsa29I	ATCGAT	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 507
BseCI	ATCGAT	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	97, 507
BseMII	CTCAG	1 cut(s)	516
BshFI	GGCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	97, 507
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	96
Bsp119I	TTCGAA	2 cut(s)	667, 725
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	305, 398, 586, 757
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	515
BspDI	ATCGAT	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	124, 499
BspPI	GGATC	1 cut(s)	313
BspT104I	TTCGAA	2 cut(s)	667, 725
BssMI	GATC	4 cut(s)	305, 398, 586, 757
Bst4CI	ACNGT	3 cut(s)	238, 252, 691
Bst6I	CTCTTC	1 cut(s)	86
BstBI	TTCGAA	2 cut(s)	667, 725
BstDEI	CTNAG	2 cut(s)	483, 502
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	308, 401, 589, 760
BstMBI	GATC	4 cut(s)	305, 398, 586, 757
BstNSI	RCATGY	1 cut(s)	153
BstX2I	RGATCY	3 cut(s)	305, 398, 586
BstYI	RGATCY	3 cut(s)	305, 398, 586
Bsu15I	ATCGAT	1 cut(s)	600
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	70
BsuTUI	ATCGAT	1 cut(s)	600
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	600
CviAII	CATG	2 cut(s)	150, 172
CviJI	RGCY	5 cut(s)	70, 95, 169, 245, 446
CviKI_1	RGCY	5 cut(s)	70, 95, 169, 245, 446
DdeI	CTNAG	2 cut(s)	483, 502
DpnI	GATC	4 cut(s)	307, 400, 588, 759
DpnII	GATC	4 cut(s)	305, 398, 586, 757
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	95
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	2 cut(s)	153, 175
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	2 cut(s)	149, 171
FblI	GTMKAC	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	97
FspBI	CTAG	2 cut(s)	242, 620
GlaI	GCGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	153, 175
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	2 cut(s)	33, 450
HphI	GGTGA	1 cut(s)	462
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	5 cut(s)	32, 92, 427, 505, 697
Hpy188III	TCNNGA	2 cut(s)	172, 590
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	6 cut(s)	81, 95, 104, 113, 570, 572
HpyCH4III	ACNGT	3 cut(s)	238, 252, 691
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	2 cut(s)	205, 386
HpyF3I	CTNAG	2 cut(s)	483, 502
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	2 cut(s)	153, 175
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	305, 398, 586, 757
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	4 cut(s)	328, 396, 509, 575
MaeI	CTAG	2 cut(s)	242, 620
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	2 cut(s)	369, 514
MalI	GATC	4 cut(s)	307, 400, 588, 759
MboI	GATC	4 cut(s)	305, 398, 586, 757
MboII	GAAGA	7 cut(s)	16, 73, 128, 142, 326, 557, 596
MflI	RGATCY	3 cut(s)	305, 398, 586
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	8 cut(s)	13, 364, 428, 436, 639, 656, 721, 727
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	2 cut(s)	511, 526
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	4 cut(s)	363, 492, 642, 763
Mva1269I	GAATGC	1 cut(s)	339
NdeII	GATC	4 cut(s)	305, 398, 586, 757
NlaIII	CATG	2 cut(s)	153, 175
NlaIV	GGNNCC	2 cut(s)	124, 499
NmuCI	GTSAC	2 cut(s)	369, 514
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	1 cut(s)	153
NspV	TTCGAA	2 cut(s)	667, 725
PagI	TCATGA	1 cut(s)	171
PciI	ACATGT	1 cut(s)	149
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	450
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PscI	ACATGT	1 cut(s)	149
PshBI	ATTAAT	1 cut(s)	642
Psp124BI	GAGCTC	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	124, 499
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	3 cut(s)	305, 398, 586
SacI	GAGCTC	1 cut(s)	97
SaqAI	TTAA	4 cut(s)	363, 492, 642, 763
Sau3AI	GATC	4 cut(s)	305, 398, 586, 757
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	8 cut(s)	97, 171, 226, 247, 393, 503, 537, 666
SfuI	TTCGAA	2 cut(s)	667, 725
Sse9I	AATT	8 cut(s)	13, 364, 428, 436, 639, 656, 721, 727
SspMI	CTAG	2 cut(s)	242, 620
SstI	GAGCTC	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	238, 252, 691
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	4 cut(s)	448, 600, 667, 725
TasI	AATT	8 cut(s)	13, 364, 428, 436, 639, 656, 721, 727
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	4 cut(s)	363, 492, 642, 763
Tru9I	TTAA	4 cut(s)	363, 492, 642, 763
TseFI	GTSAC	2 cut(s)	369, 514
Tsp45I	GTSAC	2 cut(s)	369, 514
TspDTI	ATGAA	5 cut(s)	17, 169, 254, 623, 669
VspI	ATTAAT	1 cut(s)	642
XagI	CCTNNNNNAGG	1 cut(s)	505
XapI	RAATTY	4 cut(s)	13, 436, 721, 727
XceI	RCATGY	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	2 cut(s)	242, 620
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.