AT2G12480

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
5069544 .. 5072656
3113 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G12480.1

Sequence Viewer

Length: 1329 bp
ATGGTATCGTCTCGGGCCGTTGTGATGGCCATTATGGTATTGGTCACAGTGCAGTGGTTGGTTTTTGCTGAAGGTTATCCGGAAGAAGACTTGGTGGCCAGGCTACCTGGTCAACCAAACGTCGGGTTCAGACAATTTGCTGGATATGTCGATGTGGACTCGGAAAATGGTCGTAGTCTTTTTTACTACTACGTGGAGGCTGTAAAAGAACCTGACACTAAGCCCTTAACCCTTTGGCTCAATGGAGGTCCAGGTTGTTCTTCAGTTGGTGGAGGAGCTTTCACTGAGTTAGGTCCATTTTATCCTACGGGCGATGGCCGTGGCCTTCGCTTGAACTCCATGTCTTGGAACAAAGCTTCGAACTTGTTATTTGTGGAGTCACCAGCCGGAGTAGGATGGTCATACTCTAACAGAAGTTCGGATTACAACACTGGGGACAAGTCTACTGTCAATGATATGCTTGTGTTCTTGTTGAGATGGTTCAACAAGTTCCCAGAGTTGAAGTCTCGCGACCTCTTTCTCACTGGCGAAAGCTACGCAGGGCATTACATACCTCAACTGGCTGATGTGATACTCAGCTACAATTCACGCTCAAGTGGGTTCAAATTTAACGTCAAAGGCATTGCAATTGGGAATCCACTTCTGAAGCTTGACAGGGACTTTGCAGCTGCATACGAGTACTTCTGGTCACATGGGATGATCTCTGATGAAGTAAGACTCACAATCATGAACCAATGTGACTTTGCCAATCCAAAGAACATGAGCAATGCTTGTATATATGCAATCGTTGAATCCAGCGTCCTCACTGAGTATATCAACAGCTATCACATTCTCCTCGATGTATGTTACCCTTCTATTGTTCAGCAAGAGCTAAGGCTCAAGAAAATGAATGCGCTTCACGCTAACCGCACTCGCCTACCTTATGAATGGACTATGTGCAGCAACCGGTTAAACTACAGTGGCATAGACGGGTACATTGACATGCTTCCGAGTCTTAAGAGAATTATTCAGAACCAAACTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAATTCCACTTCAAAGTTCAAGAACACTCGTACGAGAACTTGCTGAGGATCTCAACTTCAAGACCACTATTCCCTATGGAGCTTGGTTCCACAAAGAACAGGTTGGTGGCTGGGTCACAGAGTATGGGAATCTACTGACCTTTGCAACGGTGAGAGGAGCGGCTCATATGGTGCCGTATGCGGAGCCCTCACGAGCTCTGCACATGTTCAGTAGCTTTATGAATGGCCGGAGATTGCCCAACAAACCAGATTTAAAGTCTTCTACTGATGATTGA

Protein Analysis

442

Amino Acids

49.77

Weight (kDa)

6.03

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 36 - 293 3e-89 Serine carboxypeptidase
Peptidase_S10 PF00450 296 - 427 3.2e-30 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0026996)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12480 AT2G12480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1225
AccB7I CCANNNNNTGG 1 cut(s) 345
AccBSI CCGCTC 1 cut(s) 1214
AccI GTMKAC 1 cut(s) 443
AccII CGCG 1 cut(s) 510
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 3 cut(s) 907, 1214, 1235
AclWI GGATC 2 cut(s) 1037, 1110
AcoI YGGCCR 4 cut(s) 27, 96, 316, 1279
AcsI RAATTY 1 cut(s) 605
AcuI CTGAAG 4 cut(s) 90, 246, 665, 1018
AfaI GTAC 3 cut(s) 680, 974, 1086
AfiI CCNNNNNNNGG 2 cut(s) 122, 345
AflII CTTAAG 1 cut(s) 995
AflIII ACRYGT 1 cut(s) 1257
AgeI ACCGGT 1 cut(s) 945
AgsI TTSAA 8 cut(s) 334, 484, 502, 604, 791, 1067, 1074, 1114
AjnI CCWGG 3 cut(s) 98, 106, 250
Alw21I GWGCWC 1 cut(s) 1252
Alw26I GTCTC 2 cut(s) 15, 510
AlwI GGATC 2 cut(s) 1037, 1110
Ama87I CYCGRG 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 6 cut(s) 15, 27, 96, 316, 322, 1279
ApeKI GCWGC 3 cut(s) 665, 668, 939
ApoI RAATTY 1 cut(s) 605
ArsI GACNNNNNNTTYG 4 cut(s) 597, 629, 644, 676
AsiGI ACCGGT 1 cut(s) 945
AspLEI GCGC 1 cut(s) 895
AspS9I GGNCC 3 cut(s) 15, 248, 293
AsuHPI GGTGA 2 cut(s) 372, 1216
AsuII TTCGAA 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 2 cut(s) 248, 293
BalI TGGCCA 2 cut(s) 29, 98
BanI GGYRCC 1 cut(s) 1225
BanII GRGCYC 2 cut(s) 1242, 1252
BarI GAAGNNNNNNTAC 2 cut(s) 1047, 1079
BauI CACGAG 1 cut(s) 1245
BbsI GAAGAC 2 cut(s) 93, 1305
Bbv12I GWGCWC 1 cut(s) 1252
BbvCI CCTCAGC 1 cut(s) 1098
BbvI GCAGC 3 cut(s) 655, 677, 951
BccI CCATC 4 cut(s) 19, 308, 390, 471
BceAI ACGGC 3 cut(s) 2, 303, 1213
BciT130I CCWGG 3 cut(s) 100, 108, 252
BcoDI GTCTC 2 cut(s) 15, 510
BfmI CTRYAG 1 cut(s) 955
BfrI CTTAAG 1 cut(s) 995
BisI GCNGC 4 cut(s) 666, 669, 940, 1215
BlsI GCNGC 4 cut(s) 667, 670, 941, 1216
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 3 cut(s) 100, 108, 252
Bme18I GGWCC 2 cut(s) 248, 293
BmeT110I CYCGRG 1 cut(s) 12
BmgT120I GGNCC 3 cut(s) 15, 248, 293
BmiI GGNNCC 3 cut(s) 1142, 1227, 1239
BmrFI CCNGG 3 cut(s) 100, 108, 252
BmrI ACTGGG 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 2 cut(s) 93, 1305
Bpu10I CCTNAGC 2 cut(s) 872, 1098
Bpu14I TTCGAA 1 cut(s) 359
BpuEI CTTGAG 2 cut(s) 577, 863
BsaAI YACGTR 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 319
BsaWI WCCGGW 2 cut(s) 79, 945
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 345
Bse118I RCCGGY 1 cut(s) 945
Bse1I ACTGG 3 cut(s) 436, 529, 564
Bse3DI GCAATG 2 cut(s) 621, 772
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 3 cut(s) 100, 108, 252
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 2 cut(s) 401, 702
BseLI CCNNNNNNNGG 2 cut(s) 122, 345
BseMI GCAATG 2 cut(s) 621, 772
BseMII CTCAG 4 cut(s) 276, 589, 798, 1089
BseNI ACTGG 3 cut(s) 436, 529, 564
BseRI GAGGAG 3 cut(s) 288, 824, 1224
BseXI GCAGC 3 cut(s) 655, 677, 951
BseYI CCCAGC 1 cut(s) 1164
BsgI GTGCAG 3 cut(s) 71, 958, 1238
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 6 cut(s) 17, 29, 98, 318, 324, 1281
BshNI GGYRCC 1 cut(s) 1225
BshTI ACCGGT 1 cut(s) 945
BsiHKAI GWGCWC 1 cut(s) 1252
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 4 cut(s) 80, 387, 946, 1282
BsiWI CGTACG 1 cut(s) 1084
BslFI GGGAC 2 cut(s) 449, 671
BslI CCNNNNNNNGG 2 cut(s) 122, 345
BsmAI GTCTC 2 cut(s) 15, 510
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 449, 671
BsmI GAATGC 1 cut(s) 895
BsnI GGCC 6 cut(s) 17, 29, 98, 318, 324, 1281
BsoBI CYCGRG 1 cut(s) 12
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 1242, 1252
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 4 cut(s) 699, 1029, 1042, 1102
Bsp68I TCGCGA 1 cut(s) 510
BspACI CCGC 3 cut(s) 907, 1214, 1235
BspANI GGCC 6 cut(s) 17, 29, 98, 318, 324, 1281
BspCNI CTCAG 4 cut(s) 277, 588, 799, 1090
BspEI TCCGGA 1 cut(s) 79
BspFNI CGCG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 3 cut(s) 1142, 1227, 1239
BspPI GGATC 2 cut(s) 1037, 1110
BspT104I TTCGAA 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 1225
BspTI CTTAAG 1 cut(s) 995
BsrBI CCGCTC 1 cut(s) 1214
BsrDI GCAATG 2 cut(s) 621, 772
BsrFI RCCGGY 1 cut(s) 945
BsrI ACTGG 3 cut(s) 436, 529, 564
BssAI RCCGGY 1 cut(s) 945
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 4 cut(s) 699, 1029, 1042, 1102
BssSI CACGAG 1 cut(s) 1245
Bst2BI CACGAG 1 cut(s) 1245
Bst2UI CCWGG 3 cut(s) 100, 108, 252
Bst4CI ACNGT 4 cut(s) 49, 448, 959, 1204
BstAFI CTTAAG 1 cut(s) 995
BstBAI YACGTR 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 359
BstDEI CTNAG 6 cut(s) 219, 285, 575, 807, 872, 1098
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 2 cut(s) 401, 702
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 1 cut(s) 895
BstKTI GATC 4 cut(s) 702, 1032, 1045, 1105
BstMAI GTCTC 2 cut(s) 15, 510
BstMBI GATC 4 cut(s) 699, 1029, 1042, 1102
BstMWI GCNNNNNNNGC 1 cut(s) 899
BstNI CCWGG 3 cut(s) 100, 108, 252
BstNSI RCATGY 2 cut(s) 985, 1261
BstSCI CCNGG 3 cut(s) 98, 106, 250
BstSFI CTRYAG 1 cut(s) 955
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 655, 677, 951
BstV2I GAAGAC 2 cut(s) 93, 1305
BstX2I RGATCY 2 cut(s) 1029, 1102
BstYI RGATCY 2 cut(s) 1029, 1102
BsuRI GGCC 6 cut(s) 17, 29, 98, 318, 324, 1281
BtgI CCRYGG 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 2 cut(s) 401, 702
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 8 cut(s) 54, 59, 282, 429, 522, 804, 964, 1042
BtuMI TCGCGA 1 cut(s) 510
CciI TCATGA 1 cut(s) 726
CfoI GCGC 1 cut(s) 895
Cfr10I RCCGGY 1 cut(s) 945
Cfr13I GGNCC 3 cut(s) 15, 248, 293
CseI GACGC 1 cut(s) 787
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 3 cut(s) 679, 973, 1085
CspAI ACCGGT 1 cut(s) 945
CviAII CATG 6 cut(s) 340, 692, 727, 760, 982, 1258
CviQI GTAC 3 cut(s) 679, 973, 1085
DdeI CTNAG 6 cut(s) 219, 285, 575, 807, 872, 1098
DpnI GATC 4 cut(s) 701, 1031, 1044, 1104
DpnII GATC 4 cut(s) 699, 1029, 1042, 1102
DraI TTTAAA 1 cut(s) 1308
EaeI YGGCCR 4 cut(s) 27, 96, 316, 1279
Ecl136II GAGCTC 1 cut(s) 1250
Eco24I GRGCYC 2 cut(s) 1242, 1252
Eco47I GGWCC 2 cut(s) 248, 293
Eco53kI GAGCTC 1 cut(s) 1250
Eco57I CTGAAG 4 cut(s) 90, 246, 665, 1018
Eco88I CYCGRG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 1250
EcoRII CCWGG 3 cut(s) 98, 106, 250
EcoT38I GRGCYC 2 cut(s) 1242, 1252
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 6 cut(s) 343, 695, 730, 763, 985, 1261
FaqI GGGAC 2 cut(s) 449, 671
FatI CATG 6 cut(s) 339, 691, 726, 759, 981, 1257
FauNDI CATATG 1 cut(s) 1221
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 4 cut(s) 666, 669, 940, 1215
FokI GGATG 2 cut(s) 408, 709
FriOI GRGCYC 2 cut(s) 1242, 1252
Fsp4HI GCNGC 4 cut(s) 666, 669, 940, 1215
GlaI GCGC 1 cut(s) 894
GluI GCNGC 4 cut(s) 666, 669, 940, 1215
GsaI CCCAGC 1 cut(s) 1168
HaeIII GGCC 6 cut(s) 17, 29, 98, 318, 324, 1281
HapII CCGG 4 cut(s) 80, 387, 946, 1282
HgaI GACGC 1 cut(s) 787
HhaI GCGC 1 cut(s) 895
Hin1II CATG 6 cut(s) 343, 695, 730, 763, 985, 1261
Hin6I GCGC 1 cut(s) 893
HinP1I GCGC 1 cut(s) 893
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HindIII AAGCTT 2 cut(s) 354, 647
HinfI GANTC 8 cut(s) 158, 377, 634, 717, 791, 991, 1049, 1183
HpaII CCGG 4 cut(s) 80, 387, 946, 1282
HphI GGTGA 2 cut(s) 372, 1216
Hpy166II GTNNAC 3 cut(s) 113, 157, 444
Hpy188I TCNGA 7 cut(s) 131, 163, 421, 645, 706, 990, 1011
Hpy188III TCNNGA 8 cut(s) 80, 509, 727, 880, 1046, 1074, 1114, 1245
Hpy8I GTNNAC 3 cut(s) 113, 157, 444
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 65, 335, 861
HpyCH4III ACNGT 4 cut(s) 49, 448, 959, 1204
HpyCH4IV ACGT 3 cut(s) 120, 192, 612
HpyCH4V TGCA 8 cut(s) 52, 626, 665, 671, 782, 939, 1199, 1255
HpyF10VI GCNNNNNNNGC 1 cut(s) 899
HpyF3I CTNAG 6 cut(s) 219, 285, 575, 807, 872, 1098
HpySE526I ACGT 3 cut(s) 120, 192, 612
Hsp92II CATG 6 cut(s) 343, 695, 730, 763, 985, 1261
HspAI GCGC 1 cut(s) 893
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 4 cut(s) 699, 1029, 1042, 1102
LmnI GCTCC 4 cut(s) 275, 1133, 1211, 1237
Lsp1109I GCAGC 3 cut(s) 655, 677, 951
MabI ACCWGGT 1 cut(s) 106
MaeII ACGT 3 cut(s) 120, 192, 612
MaeIII GTNAC 6 cut(s) 43, 378, 687, 737, 845, 1168
MalI GATC 4 cut(s) 701, 1031, 1044, 1104
MbiI CCGCTC 1 cut(s) 1214
MboI GATC 4 cut(s) 699, 1029, 1042, 1102
MboII GAAGA 5 cut(s) 95, 98, 252, 1024, 1305
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 2 cut(s) 1029, 1102
MhlI GDGCHC 2 cut(s) 1242, 1252
MlsI TGGCCA 2 cut(s) 29, 98
MluCI AATT 6 cut(s) 134, 583, 605, 627, 1002, 1056
MluNI TGGCCA 2 cut(s) 29, 98
MlyI GAGTC 4 cut(s) 152, 386, 711, 1000
Mox20I TGGCCA 2 cut(s) 29, 98
MroI TCCGGA 1 cut(s) 79
MscI TGGCCA 2 cut(s) 29, 98
MseI TTAA 5 cut(s) 227, 609, 950, 996, 1307
MslI CAYNNNNRTG 2 cut(s) 725, 980
Msp20I TGGCCA 2 cut(s) 29, 98
MspA1I CMGCKG 1 cut(s) 668
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 4 cut(s) 80, 387, 946, 1282
MspR9I CCNGG 3 cut(s) 100, 108, 252
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 895
MvaI CCWGG 3 cut(s) 100, 108, 252
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 1 cut(s) 899
NdeI CATATG 1 cut(s) 1221
NdeII GATC 4 cut(s) 699, 1029, 1042, 1102
NlaIII CATG 6 cut(s) 343, 695, 730, 763, 985, 1261
NlaIV GGNNCC 3 cut(s) 1142, 1227, 1239
NmuCI GTSAC 5 cut(s) 43, 378, 687, 737, 1168
NruI TCGCGA 1 cut(s) 510
NspI RCATGY 2 cut(s) 985, 1261
NspV TTCGAA 1 cut(s) 359
PagI TCATGA 1 cut(s) 726
PciI ACATGT 1 cut(s) 1257
PctI GAATGC 1 cut(s) 895
PfeI GAWTC 4 cut(s) 634, 791, 1049, 1183
Pfl23II CGTACG 1 cut(s) 1084
PflMI CCANNNNNTGG 1 cut(s) 345
PinAI ACCGGT 1 cut(s) 945
PkrI GCNGC 4 cut(s) 667, 670, 941, 1216
PleI GAGTC 4 cut(s) 152, 385, 711, 999
PpsI GAGTC 4 cut(s) 152, 385, 711, 999
Ppu21I YACGTR 1 cut(s) 193
PscI ACATGT 1 cut(s) 1257
Psp124BI GAGCTC 1 cut(s) 1252
Psp6I CCWGG 3 cut(s) 98, 106, 250
PspFI CCCAGC 1 cut(s) 1164
PspGI CCWGG 3 cut(s) 98, 106, 250
PspLI CGTACG 1 cut(s) 1084
PspN4I GGNNCC 3 cut(s) 1142, 1227, 1239
PspPI GGNCC 3 cut(s) 15, 248, 293
PsuI RGATCY 2 cut(s) 1029, 1102
PvuII CAGCTG 1 cut(s) 668
RruI TCGCGA 1 cut(s) 510
RsaI GTAC 3 cut(s) 680, 974, 1086
RsaNI GTAC 3 cut(s) 679, 973, 1085
RseI CAYNNNNRTG 2 cut(s) 725, 980
SacI GAGCTC 1 cut(s) 1252
SaqAI TTAA 5 cut(s) 227, 609, 950, 996, 1307
SatI GCNGC 4 cut(s) 666, 669, 940, 1215
Sau3AI GATC 4 cut(s) 699, 1029, 1042, 1102
Sau96I GGNCC 3 cut(s) 15, 248, 293
ScaI AGTACT 1 cut(s) 680
SchI GAGTC 4 cut(s) 152, 386, 711, 1000
ScrFI CCNGG 3 cut(s) 100, 108, 252
SduI GDGCHC 2 cut(s) 1242, 1252
SexAI ACCWGGT 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 955
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 2 cut(s) 248, 293
SmiMI CAYNNNNRTG 2 cut(s) 725, 980
SmlI CTYRAG 3 cut(s) 592, 878, 995
SmoI CTYRAG 3 cut(s) 592, 878, 995
Sse9I AATT 6 cut(s) 134, 583, 605, 627, 1002, 1056
SsiI CCGC 3 cut(s) 907, 1214, 1235
SstI GAGCTC 1 cut(s) 1252
StyD4I CCNGG 3 cut(s) 98, 106, 250
TaaI ACNGT 4 cut(s) 49, 448, 959, 1204
TaiI ACGT 3 cut(s) 123, 195, 615
TaqI TCGA 3 cut(s) 150, 359, 837
TasI AATT 6 cut(s) 134, 583, 605, 627, 1002, 1056
TatI WGTACW 1 cut(s) 678
TauI GCSGC 1 cut(s) 1217
TfiI GAWTC 4 cut(s) 634, 791, 1049, 1183
Tru1I TTAA 5 cut(s) 227, 609, 950, 996, 1307
Tru9I TTAA 5 cut(s) 227, 609, 950, 996, 1307
TscAI CASTG 8 cut(s) 54, 59, 289, 436, 529, 811, 964, 1042
TseFI GTSAC 5 cut(s) 43, 378, 687, 737, 1168
TseI GCWGC 3 cut(s) 665, 668, 939
Tsp45I GTSAC 5 cut(s) 43, 378, 687, 737, 1168
TspDTI ATGAA 5 cut(s) 723, 743, 902, 939, 1289
TspRI CASTG 8 cut(s) 54, 59, 289, 436, 529, 811, 964, 1042
Van91I CCANNNNNTGG 1 cut(s) 345
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 2 cut(s) 248, 293
XapI RAATTY 1 cut(s) 605
XceI RCATGY 2 cut(s) 985, 1261
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 443
ZrmI AGTACT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.