Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026831

Physical Location & Seq

Genomic Coordinates Forward (+)

8799041 .. 8801991

Gene Structure 2951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGATCCCGAATGATGATGATGATGCAAATTCTATGAAGAATTATCCGTTAAATGATGATGATGCAAATTCTATGAAGAATTATCCGTTAAATGATGATGATGCAAATTCTATGGAGAATTATCCGTTAAGGTCAATTCCGACGGAGCTTTCACACACTTGTTCATTGATACCACCTTCTTTACCAAACCCTTCAGAAGCAGCAGCAGACATGTCCTTCAATTCAGAACTCAATCAAATCATGGCAAGGCCTTGTGATATGCTCCCTGCCAATGGTGGAGCTGTTGGTCATAACCCTTTTTTGGAACCAGGATTCAACTGCCCCGAGACAACAGATTGGATTCCCTCTCCACTCCCCCATATTTATTTTCCTTCGGGTTCTCCCAATCTAATAATGGAGGATGGTGTCATTGATGAGATTCACAAACAAAGTGACTTGCCACTTTGGTATGACGACTTGATTACCACTGATGAAGATCCACTCATGTCTAGTATCTTGGGCGATCTTCTCCTTGACACTAATTTCAACTCAGCTTCAAAGGTCCAGCAACCAAGTATGCAATCGCAGATTCAACAACCCCAAGCTGTTCTGCAGCAGCCTTCTTCTTGTGTGGAATTGCGCCCACTTGATAGGACAGTATCCTCAAACAGCAACAACAATAGCAACAGTAATAATGCAGCAGCAGCAGCTAAGGGACGTATGCGTTGGACGCCTGAACTTCATGAGGTTTTTGTTGACGCTGTTAACCAGCTCGGTGGCAGTAATGAAGCAACTCCTAAAGGTGTCCTGAAGCATATGAAAGTCGAAGGTTTGACTATTTTTCATGTCAAAAGTCATTTGCAGAAATATAGAACAGCTAAATATATACCAGTACCATCAGAAGGTTCGCCGGAGGCAAGGTTGACACCGCTTGAGCAAATTACATCTGATGATACGAAACGTGGGATAGATATCACTGAGACTCTGCGAATTCAGATGGAACATCAGAAGAAACTGCATGAGCAGCTTGAGAGTCTAAGAACAATGCAACTTCGGATAGAAGAGCAAGGAAAGGCGCTGTTGATGATGATTGAGAAGCAAAATATGGGTTTCGGCGGACCAGAACAAGGAGAGAAAACAAGTGCGAAAACGCCTGAAAATGGTTCAGAGGAGTCGGAATCCCCGCGGCCAAAGCGTCCGAGAAATGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

397

Amino Acids

44.11

Weight (kDa)

4.75

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	233 - 284	2.3e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	318 - 362	4.2e-15	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20400 AT2G20400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1165
AciI	CCGC	4 cut(s)	908, 1095, 1163, 1165
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	1166
AcsI	RAATTY	4 cut(s)	28, 67, 106, 969
AcuI	CTGAAG	2 cut(s)	177, 809
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	1 cut(s)	873
AfiI	CCNNNNNNNGG	5 cut(s)	272, 301, 881, 1106, 1139
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	5 cut(s)	220, 316, 526, 537, 572
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	8 cut(s)	148, 281, 533, 584, 689, 751, 857, 1006
AluI	AGCT	8 cut(s)	148, 281, 533, 584, 689, 751, 857, 1006
Alw26I	GTCTC	2 cut(s)	320, 953
AlwI	GGATC	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	248, 1166
ApeKI	GCWGC	9 cut(s)	200, 203, 592, 595, 677, 680, 683, 686, 1003
ApoI	RAATTY	4 cut(s)	28, 67, 106, 969
AspLEI	GCGC	2 cut(s)	621, 1057
AspS9I	GGNCC	2 cut(s)	541, 1097
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	541, 1097
BbvI	GCAGC	9 cut(s)	212, 215, 604, 607, 689, 692, 695, 698, 1015
BccI	CCATC	3 cut(s)	395, 883, 970
BciT130I	CCWGG	1 cut(s)	309
BciVI	GTATCC	1 cut(s)	649
BcoDI	GTCTC	2 cut(s)	320, 953
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	590
BfoI	RGCGCY	1 cut(s)	1058
BfuI	GTATCC	1 cut(s)	649
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	541, 1097
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	541, 1097
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	3 cut(s)	13, 52, 91
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	932, 1028
BsaBI	GATNNNNATC	2 cut(s)	474, 950
BsaHI	GRCGYC	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	1163
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 301, 881, 1106, 1139
Bse1I	ACTGG	1 cut(s)	869
Bse8I	GATNNNNATC	2 cut(s)	474, 950
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	1163
BseGI	GGATG	1 cut(s)	406
BseJI	GATNNNNATC	2 cut(s)	474, 950
BseLI	CCNNNNNNNGG	5 cut(s)	272, 301, 881, 1106, 1139
BseMII	CTCAG	2 cut(s)	543, 948
BseNI	ACTGG	1 cut(s)	869
BseRI	GAGGAG	1 cut(s)	1163
BseXI	GCAGC	9 cut(s)	212, 215, 604, 607, 689, 692, 695, 698, 1015
Bsh1236I	CGCG	1 cut(s)	1165
BshFI	GGCC	2 cut(s)	250, 1168
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	890
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	5 cut(s)	272, 301, 881, 1106, 1139
BsmAI	GTCTC	2 cut(s)	320, 953
BsmFI	GGGAC	1 cut(s)	708
BsnI	GGCC	2 cut(s)	250, 1168
BsoBI	CYCGRG	1 cut(s)	323
Bsp143I	GATC	3 cut(s)	3, 475, 502
BspACI	CCGC	4 cut(s)	908, 1095, 1163, 1165
BspANI	GGCC	2 cut(s)	250, 1168
BspCNI	CTCAG	2 cut(s)	542, 949
BspFNI	CGCG	1 cut(s)	1165
BspHI	TCATGA	1 cut(s)	721
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	594
BspPI	GGATC	1 cut(s)	470
BspQI	GCTCTTC	1 cut(s)	1035
BsrI	ACTGG	1 cut(s)	869
BssECI	CCNNGG	1 cut(s)	1163
BssMI	GATC	3 cut(s)	3, 475, 502
BssNI	GRCGYC	1 cut(s)	710
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	637, 668
Bst6I	CTCTTC	1 cut(s)	1035
BstACI	GRCGYC	1 cut(s)	710
BstDEI	CTNAG	4 cut(s)	529, 690, 957, 1016
BstDSI	CCRYGG	1 cut(s)	1163
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	1165
BstH2I	RGCGCY	1 cut(s)	1058
BstHHI	GCGC	2 cut(s)	621, 1057
BstKTI	GATC	3 cut(s)	6, 478, 505
BstMAI	GTCTC	2 cut(s)	320, 953
BstMBI	GATC	3 cut(s)	3, 475, 502
BstMWI	GCNNNNNNNGC	5 cut(s)	683, 686, 709, 1003, 1171
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	590
BstUI	CGCG	1 cut(s)	1165
BstV1I	GCAGC	9 cut(s)	212, 215, 604, 607, 689, 692, 695, 698, 1015
BstX2I	RGATCY	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	475
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	250, 1168
BtgI	CCRYGG	1 cut(s)	1163
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	465, 954
CciI	TCATGA	1 cut(s)	721
CfoI	GCGC	2 cut(s)	621, 1057
Cfr13I	GGNCC	2 cut(s)	541, 1097
Cfr42I	CCGCGG	1 cut(s)	1166
CseI	GACGC	3 cut(s)	718, 746, 1163
Csp6I	GTAC	1 cut(s)	872
CviAII	CATG	6 cut(s)	211, 241, 484, 722, 824, 998
CviQI	GTAC	1 cut(s)	872
DdeI	CTNAG	4 cut(s)	529, 690, 957, 1016
DpnI	GATC	3 cut(s)	5, 477, 504
DpnII	GATC	3 cut(s)	3, 475, 502
EaeI	YGGCCR	1 cut(s)	1166
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
EciI	GGCGGA	1 cut(s)	1110
Eco147I	AGGCCT	1 cut(s)	250
Eco32I	GATATC	1 cut(s)	952
Eco47I	GGWCC	2 cut(s)	541, 1097
Eco57I	CTGAAG	2 cut(s)	177, 809
Eco88I	CYCGRG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	969
EcoRII	CCWGG	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	952
FaeI	CATG	6 cut(s)	214, 244, 487, 725, 827, 1001
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	6 cut(s)	210, 240, 483, 721, 823, 997
FauI	CCCGC	1 cut(s)	1170
FauNDI	CATATG	1 cut(s)	795
FokI	GGATG	1 cut(s)	413
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	2 cut(s)	620, 1056
HaeII	RGCGCY	1 cut(s)	1058
HaeIII	GGCC	2 cut(s)	250, 1168
HapII	CCGG	1 cut(s)	890
HgaI	GACGC	3 cut(s)	718, 746, 1163
HhaI	GCGC	2 cut(s)	621, 1057
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	6 cut(s)	214, 244, 487, 725, 827, 1001
Hin6I	GCGC	2 cut(s)	619, 1055
HinP1I	GCGC	2 cut(s)	619, 1055
HincII	GTYRAC	3 cut(s)	736, 745, 903
HindII	GTYRAC	3 cut(s)	736, 745, 903
HinfI	GANTC	8 cut(s)	312, 340, 418, 568, 961, 1012, 1151, 1157
HpaI	GTTAAC	1 cut(s)	745
HpaII	CCGG	1 cut(s)	890
Hpy166II	GTNNAC	3 cut(s)	736, 745, 903
Hpy188III	TCNNGA	3 cut(s)	7, 722, 787
Hpy8I	GTNNAC	3 cut(s)	736, 745, 903
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	7 cut(s)	186, 201, 226, 381, 609, 800, 875
HpyCH4III	ACNGT	2 cut(s)	637, 668
HpyCH4IV	ACGT	2 cut(s)	697, 940
HpyCH4V	TGCA	9 cut(s)	26, 65, 104, 559, 592, 677, 841, 997, 1027
HpyF10VI	GCNNNNNNNGC	5 cut(s)	683, 686, 709, 1003, 1171
HpyF3I	CTNAG	4 cut(s)	529, 690, 957, 1016
HpySE526I	ACGT	2 cut(s)	697, 940
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	6 cut(s)	214, 244, 487, 725, 827, 1001
HspAI	GCGC	2 cut(s)	619, 1055
KspAI	GTTAAC	1 cut(s)	745
KspI	CCGCGG	1 cut(s)	1166
Kzo9I	GATC	3 cut(s)	3, 475, 502
LguI	GCTCTTC	1 cut(s)	1035
LmnI	GCTCC	3 cut(s)	145, 267, 278
Lsp1109I	GCAGC	9 cut(s)	212, 215, 604, 607, 689, 692, 695, 698, 1015
LweI	GCATC	3 cut(s)	13, 52, 91
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	697, 940
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	5, 477, 504
MboI	GATC	3 cut(s)	3, 475, 502
MboII	GAAGA	7 cut(s)	49, 88, 485, 497, 594, 1000, 1052
MflI	RGATCY	1 cut(s)	475
MlyI	GAGTC	3 cut(s)	955, 1021, 1160
MmeI	TCCRAC	3 cut(s)	164, 686, 1134
MnlI	CCTC	6 cut(s)	355, 391, 652, 718, 886, 1141
MseI	TTAA	4 cut(s)	50, 89, 128, 744
MspA1I	CMGCKG	1 cut(s)	1165
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	1165
MwoI	GCNNNNNNNGC	5 cut(s)	683, 686, 709, 1003, 1171
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	3 cut(s)	3, 475, 502
NlaIII	CATG	6 cut(s)	214, 244, 487, 725, 827, 1001
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	431
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	1 cut(s)	721
PceI	AGGCCT	1 cut(s)	250
PciI	ACATGT	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	1035
PfeI	GAWTC	5 cut(s)	312, 340, 418, 568, 1157
PleI	GAGTC	3 cut(s)	955, 1020, 1159
PpsI	GAGTC	3 cut(s)	955, 1020, 1159
PscI	ACATGT	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	541, 1097
PstI	CTGCAG	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	1 cut(s)	873
RsaNI	GTAC	1 cut(s)	872
SacII	CCGCGG	1 cut(s)	1166
SapI	GCTCTTC	1 cut(s)	1035
SaqAI	TTAA	4 cut(s)	50, 89, 128, 744
Sau3AI	GATC	3 cut(s)	3, 475, 502
Sau96I	GGNCC	2 cut(s)	541, 1097
SchI	GAGTC	3 cut(s)	955, 1021, 1160
ScrFI	CCNGG	1 cut(s)	309
SfaNI	GCATC	3 cut(s)	13, 52, 91
SfcI	CTRYAG	1 cut(s)	590
Sfr303I	CCGCGG	1 cut(s)	1166
SgrBI	CCGCGG	1 cut(s)	1166
SinI	GGWCC	2 cut(s)	541, 1097
SmlI	CTYRAG	2 cut(s)	911, 1007
SmoI	CTYRAG	2 cut(s)	911, 1007
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	4 cut(s)	908, 1095, 1163, 1165
SspMI	CTAG	1 cut(s)	489
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	2 cut(s)	637, 668
TaiI	ACGT	2 cut(s)	700, 943
TaqI	TCGA	1 cut(s)	804
TauI	GCSGC	1 cut(s)	1168
TfiI	GAWTC	5 cut(s)	312, 340, 418, 568, 1157
Tru1I	TTAA	4 cut(s)	50, 89, 128, 744
Tru9I	TTAA	4 cut(s)	50, 89, 128, 744
TscAI	CASTG	2 cut(s)	472, 961
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	9 cut(s)	200, 203, 592, 595, 677, 680, 683, 686, 1003
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	8 cut(s)	50, 89, 153, 486, 710, 780, 812, 812
TspGWI	ACGGA	4 cut(s)	36, 75, 114, 158
TspRI	CASTG	2 cut(s)	472, 961
VpaK11BI	GGWCC	2 cut(s)	541, 1097
XapI	RAATTY	4 cut(s)	28, 67, 106, 969
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.